Experiment set6IT070 for Pseudomonas fluorescens FW300-N2E3

Compare to:

4C survival; 192 hrs

200 most important genes:

  gene name fitness t score description  
AO353_24130 -5.0 -4.9 hypothetical protein compare
AO353_13100 -4.3 -2.9 GTPase RsgA compare
AO353_14220 -4.1 -2.8 ribosomal large subunit pseudouridine synthase D compare
AO353_00825 -4.0 -7.1 porin compare
AO353_07315 -3.8 -3.7 rRNA methyltransferase compare
AO353_05625 -3.7 -2.5 transcription elongation factor GreA compare
AO353_03615 -3.4 -4.0 cold-shock protein compare
AO353_15250 -3.4 -4.0 cytochrome B compare
AO353_12345 -3.1 -3.0 twin-arginine protein translocation system subunit TatC compare
AO353_00650 -3.1 -4.6 cytochrome biogenesis protein compare
AO353_19360 -3.0 -4.5 peroxiredoxin compare
AO353_13070 -2.9 -9.8 phosphoserine phosphatase compare
AO353_00635 -2.8 -5.1 hypothetical protein compare
AO353_21625 -2.7 -2.9 Fe/S biogenesis protein NfuA compare
AO353_13160 -2.7 -3.7 membrane protease HflC compare
AO353_08115 -2.7 -8.5 energy transducer TonB compare
AO353_13925 -2.7 -3.6 XRE family transcriptional regulator compare
AO353_00495 -2.7 -4.0 DNA topoisomerase I compare
AO353_15905 -2.6 -9.5 outer membrane protein assembly factor BamB compare
AO353_07355 -2.5 -8.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13200 -2.4 -13.1 exoribonuclease R compare
AO353_04190 -2.4 -3.2 glycerol-3-phosphate dehydrogenase compare
AO353_06040 -2.4 -4.8 exodeoxyribonuclease V subunit alpha compare
AO353_20200 -2.4 -5.7 peptidylprolyl isomerase compare
AO353_13945 -2.3 -7.5 ubiquinol oxidase subunit II compare
AO353_20175 -2.3 -4.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_20185 -2.2 -8.1 DNA-binding protein compare
AO353_14150 -2.2 -2.6 peptidylprolyl isomerase compare
AO353_08165 -2.2 -4.4 pyrroline-5-carboxylate reductase compare
AO353_18540 -2.1 -3.7 pseudouridine synthase compare
AO353_05135 -2.1 -9.8 toluene tolerance protein compare
AO353_12500 -2.1 -2.5 shikimate kinase compare
AO353_10950 -2.1 -10.6 thiol:disulfide interchange protein compare
AO353_03580 -2.1 -4.4 ATP-dependent DNA helicase RuvB compare
AO353_00330 -2.1 -9.9 hypothetical protein compare
AO353_13140 -2.1 -7.3 tRNA dimethylallyltransferase compare
AO353_18780 -2.1 -7.4 cobyrinic acid a,c-diamide synthase compare
AO353_05690 -2.0 -4.7 SsrA-binding protein compare
AO353_12115 -2.0 -3.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02860 -2.0 -6.9 flagellar biosynthesis protein FlgB compare
AO353_22920 -2.0 -6.0 GntR family transcriptional regulator compare
AO353_15555 -2.0 -5.5 fumarylacetoacetase compare
AO353_14940 -1.9 -4.7 malate:quinone oxidoreductase compare
AO353_07075 -1.9 -5.6 elongation factor Tu compare
AO353_20565 -1.9 -1.8 tRNA-Ala compare
AO353_13940 -1.9 -8.0 cytochrome D ubiquinol oxidase subunit I compare
AO353_05145 -1.9 -6.1 ABC transporter permease compare
AO353_05140 -1.9 -8.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_14420 -1.8 -5.7 molecular chaperone DnaK compare
AO353_02570 -1.8 -3.8 hypothetical protein compare
AO353_06050 -1.8 -7.7 exodeoxyribonuclease V subunit gamma compare
AO353_21410 -1.8 -3.3 hypothetical protein compare
AO353_28425 -1.8 -4.2 TetR family transcriptional regulator compare
AO353_01410 -1.8 -3.7 ribonuclease E compare
AO353_03590 -1.8 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_14400 -1.8 -4.8 Fis family transcriptional regulator compare
AO353_18595 -1.8 -5.7 flagellar biosynthesis protein FlgF compare
AO353_06045 -1.8 -7.4 exodeoxyribonuclease V subunit beta compare
AO353_03715 -1.7 -3.2 H-NS histone compare
AO353_01975 -1.7 -8.8 glycosyl transferase compare
AO353_00515 -1.7 -4.0 hypothetical protein compare
AO353_04175 -1.7 -5.7 glycerol uptake facilitator GlpF compare
AO353_14775 -1.7 -6.1 hypothetical protein compare
AO353_14740 -1.7 -4.5 GTP-binding protein compare
AO353_18660 -1.7 -9.0 AAA family ATPase compare
AO353_06495 -1.7 -5.1 gamma-glutamyl phosphate reductase compare
AO353_27720 -1.7 -4.9 cupin compare
AO353_19145 -1.6 -3.7 protease HtpX compare
AO353_20370 -1.6 -3.5 MerR family transcriptional regulator compare
AO353_16805 -1.6 -6.2 recombinase RecA compare
AO353_12105 -1.6 -7.0 peptidase S41 compare
AO353_06585 -1.6 -5.8 hypothetical protein compare
AO353_20510 -1.6 -2.6 amidase compare
AO353_14115 -1.6 -6.5 gamma-glutamyl kinase compare
AO353_00660 -1.6 -3.6 transcriptional regulator compare
AO353_10455 -1.6 -2.2 tRNA modification GTPase MnmE compare
AO353_07610 -1.5 -2.0 hypothetical protein compare
AO353_06155 -1.5 -7.4 copper-transporting ATPase compare
AO353_10945 -1.5 -3.2 cytochrome C compare
AO353_02195 -1.5 -4.6 spermidine synthase compare
AO353_08910 -1.5 -2.5 hypothetical protein compare
AO353_04110 -1.5 -4.5 hypothetical protein compare
AO353_18625 -1.5 -8.5 flagellar biosynthesis protein FlgL compare
AO353_13640 -1.4 -4.6 histidine kinase compare
AO353_08510 -1.4 -4.4 3-phosphoglycerate dehydrogenase compare
AO353_13225 -1.4 -3.3 50S ribosomal protein L9 compare
AO353_20340 -1.4 -3.6 gamma-carboxygeranoyl-CoA hydratase compare
AO353_05150 -1.4 -5.1 ABC transporter ATP-binding protein compare
AO353_17035 -1.4 -4.7 hypothetical protein compare
AO353_05340 -1.4 -3.7 histidine kinase compare
AO353_09250 -1.4 -3.1 exodeoxyribonuclease III compare
AO353_05240 -1.4 -3.0 rod shape-determining protein MreD compare
AO353_14395 -1.4 -3.6 poly(A) polymerase compare
AO353_12935 -1.4 -3.3 glycosyltransferase compare
AO353_02875 -1.4 -7.1 flagellar biosynthesis protein FlgA compare
AO353_14975 -1.4 -4.7 hypothetical protein compare
AO353_26045 -1.4 -2.3 hypothetical protein compare
AO353_18645 -1.4 -10.1 flagellar cap protein FliD compare
AO353_18325 -1.4 -2.8 hypothetical protein compare
AO353_05420 -1.4 -1.3 peptide chain release factor 3 compare
AO353_27650 -1.4 -4.4 cell division protein FtsK compare
AO353_06850 -1.4 -4.1 MFS transporter compare
AO353_04355 -1.4 -2.0 homoserine dehydrogenase compare
AO353_23400 -1.4 -2.6 hypothetical protein compare
AO353_00585 -1.4 -8.7 cytochrome C oxidase Cbb3 compare
AO353_20335 -1.4 -4.4 3-methylcrotonyl-CoA carboxylase compare
AO353_18770 -1.4 -8.0 flagellar biosynthesis protein FlhA compare
AO353_18680 -1.3 -5.1 flagellar M-ring protein FliF compare
AO353_26285 -1.3 -2.2 hypothetical protein compare
AO353_01355 -1.3 -7.1 3-oxoacyl-ACP synthase compare
AO353_23325 -1.3 -4.3 hypothetical protein compare
AO353_18685 -1.3 -6.9 flagellar motor switch protein FliG compare
AO353_10930 -1.3 -6.6 DNA polymerase I compare
AO353_08880 -1.3 -2.5 exopolyphosphatase compare
AO353_17640 -1.3 -2.6 serine peptidase compare
AO353_26520 -1.3 -3.3 TetR family transcriptional regulator compare
AO353_08015 -1.3 -5.9 5,10-methylenetetrahydrofolate reductase compare
AO353_16940 -1.3 -4.6 deoxycytidine triphosphate deaminase compare
AO353_17750 -1.3 -2.2 transcriptional regulator compare
AO353_02660 -1.3 -4.1 peptidase P60 compare
AO353_17290 -1.3 -4.8 multidrug transporter compare
AO353_18720 -1.3 -7.7 flagellar hook-length control protein compare
AO353_03840 -1.3 -2.9 ABC transporter ATP-binding protein compare
AO353_03420 -1.3 -3.9 phosphogluconate dehydratase compare
AO353_02855 -1.3 -5.7 flagellar basal-body rod protein FlgC compare
AO353_09560 -1.2 -2.0 type VI secretion protein compare
AO353_18760 -1.2 -6.3 flagellar biosynthetic protein FlhB compare
AO353_02885 -1.2 -2.5 flagellar biosynthesis protein FlgN compare
AO353_03520 -1.2 -2.4 hypothetical protein compare
AO353_26645 -1.2 -2.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_18890 -1.2 -4.3 cytochrome C compare
AO353_07155 -1.2 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_19310 -1.2 -1.7 enoyl-CoA hydratase compare
AO353_20865 -1.2 -1.8 cold-shock protein compare
AO353_17165 -1.2 -2.2 ATP-dependent helicase compare
AO353_14370 -1.2 -5.3 glucose-6-phosphate isomerase compare
AO353_02100 -1.2 -2.7 phosphoglycolate phosphatase compare
AO353_18650 -1.2 -6.0 flagellar export chaperone FliS compare
AO353_13155 -1.2 -3.0 hypothetical protein compare
AO353_18600 -1.2 -3.7 flagellar basal-body rod protein FlgG compare
AO353_18620 -1.2 -9.2 flagellar biosynthesis protein FlgK compare
AO353_11730 -1.2 -6.7 glutamate--cysteine ligase compare
AO353_06460 -1.2 -6.0 hypothetical protein compare
AO353_00430 -1.1 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_00600 -1.1 -4.9 cytochrome C oxidase Cbb3 compare
AO353_00505 -1.1 -3.8 3-ketoacyl-CoA thiolase compare
AO353_28055 -1.1 -2.0 hypothetical protein compare
AO353_11185 -1.1 -7.3 channel protein TolC compare
AO353_18635 -1.1 -7.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_10780 -1.1 -1.9 DNA-binding protein compare
AO353_03585 -1.1 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_17645 -1.1 -7.0 peptidase M48 compare
AO353_18605 -1.1 -4.5 flagellar basal body L-ring protein compare
AO353_06455 -1.1 -2.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_18830 -1.1 -4.3 chemotaxis protein CheW compare
AO353_01645 -1.1 -5.4 hypothetical protein compare
AO353_02250 -1.1 -2.7 chorismate synthase compare
AO353_05130 -1.1 -1.6 anti-anti-sigma factor compare
AO353_02595 -1.1 -2.9 cobalamin synthase compare
AO353_18675 -1.1 -4.6 flagellar hook-basal body protein FliE compare
AO353_22855 -1.1 -2.3 hypothetical protein compare
AO353_18750 -1.1 -4.3 flagellar biosynthetic protein FliQ compare
AO353_04180 -1.0 -6.1 glycerol kinase compare
AO353_18615 -1.0 -5.7 flagellar biosynthesis protein FlgJ compare
AO353_08130 -1.0 -2.3 uracil phosphoribosyltransferase compare
AO353_00510 -1.0 -3.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_18695 -1.0 -5.7 flagellar protein export ATPase FliI compare
AO353_22860 -1.0 -5.6 cytochrome C oxidase Cbb3 compare
AO353_17675 -1.0 -4.1 hypothetical protein compare
AO353_15385 -1.0 -2.7 hypothetical protein compare
AO353_26050 -1.0 -2.2 hypothetical protein compare
AO353_10510 -1.0 -1.5 benzoate transporter compare
AO353_05840 -1.0 -7.2 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_04520 -1.0 -3.7 elongation factor 4 compare
AO353_18725 -1.0 -5.4 flagellar basal body protein FliL compare
AO353_02865 -1.0 -5.7 chemotaxis protein compare
AO353_02845 -1.0 -7.6 flagellar biosynthesis protein FlgE compare
AO353_17450 -1.0 -4.1 hypothetical protein compare
AO353_14590 -1.0 -1.4 serine kinase/phosphatase compare
AO353_10040 -1.0 -5.9 transcriptional regulator compare
AO353_20170 -1.0 -3.6 trigger factor compare
AO353_11750 -1.0 -1.9 ATPase compare
AO353_20410 -1.0 -2.4 hypothetical protein compare
AO353_18005 -1.0 -3.8 allophanate hydrolase compare
AO353_09000 -1.0 -3.8 argininosuccinate lyase compare
AO353_05210 -1.0 -4.1 hypothetical protein compare
AO353_12880 -1.0 -1.5 ADP-heptose--LPS heptosyltransferase compare
AO353_10670 -1.0 -4.4 shikimate dehydrogenase compare
AO353_06415 -1.0 -2.3 hypothetical protein compare
AO353_15885 -1.0 -2.8 Cro/Cl family transcriptional regulator compare
AO353_12015 -1.0 -2.1 antitoxin compare
AO353_21290 -1.0 -1.9 hypothetical protein compare
AO353_02015 -1.0 -5.3 acetyltransferase compare
AO353_02010 -1.0 -3.8 glycosyl transferase family 1 compare
AO353_29270 -1.0 -3.2 type VI secretion system protein compare
AO353_08245 -1.0 -1.9 cell division ATP-binding protein FtsE compare
AO353_14585 -1.0 -4.0 ribosomal-protein-alanine acetyltransferase compare
AO353_16980 -1.0 -2.4 isochorismatase compare
AO353_13580 -1.0 -2.4 copper resistance protein CopZ compare
AO353_12130 -0.9 -2.5 preprotein translocase subunit SecB compare


Specific Phenotypes

For 22 genes in this experiment