Experiment set6IT069 for Pseudomonas fluorescens FW300-N1B4

Compare to:

N2E2wt with N1B4m denitrifying repB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2453 -4.3 -2.7 hypothetical protein compare
Pf1N1B4_4446 -4.1 -2.8 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_1492 -4.0 -1.5 FIG00959437: hypothetical protein compare
Pf1N1B4_276 -3.6 -3.6 Organic hydroperoxide resistance protein compare
Pf1N1B4_2706 -3.3 -3.1 FIG00954871: hypothetical protein compare
Pf1N1B4_1750 -3.1 -2.1 Death on curing protein, Doc toxin compare
Pf1N1B4_6041 -3.0 -2.0 Carbon storage regulator compare
Pf1N1B4_4123 -3.0 -4.0 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_5187 -2.9 -1.6 5S RNA compare
Pf1N1B4_5018 -2.9 -3.1 FIG00962345: hypothetical protein compare
Pf1N1B4_4765 -2.6 -1.7 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_1350 -2.4 -3.3 GCN5-related N-acetyltransferase compare
Pf1N1B4_5699 -2.4 -2.4 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_4030 -2.4 -1.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4982 -2.3 -2.7 Transcriptional regulator, AraC family compare
Pf1N1B4_1993 -2.3 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_629 -2.3 -2.6 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_1135 -2.2 -2.0 FIG00960055: hypothetical protein compare
Pf1N1B4_2733 -2.0 -2.2 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_5906 -2.0 -2.8 Esterase/lipase compare
Pf1N1B4_4542 -2.0 -4.0 IcmF-related protein compare
Pf1N1B4_722 -2.0 -2.5 SAM-dependent methyltransferases compare
Pf1N1B4_5575 -2.0 -2.6 hypothetical protein compare
Pf1N1B4_4096 -1.9 -3.9 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_2021 -1.9 -1.8 hypothetical protein compare
Pf1N1B4_240 -1.9 -2.2 Transcriptional regulators compare
Pf1N1B4_5722 -1.9 -2.3 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3413 -1.9 -1.2 Transcriptional regulator, LysR family compare
Pf1N1B4_5995 -1.8 -2.3 Transporter, MFS superfamily compare
Pf1N1B4_3191 -1.8 -2.1 FIG00953505: hypothetical protein compare
Pf1N1B4_3998 -1.8 -3.5 putative exported protein compare
Pf1N1B4_4335 -1.8 -3.2 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_3595 -1.8 -1.8 Flagellin protein FlaG compare
Pf1N1B4_3325 -1.8 -1.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_448 -1.7 -1.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_34 -1.7 -1.1 Xanthine permease compare
Pf1N1B4_4818 -1.7 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4343 -1.7 -2.2 hypothetical protein compare
Pf1N1B4_4334 -1.7 -3.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2851 -1.6 -1.9 hypothetical protein compare
Pf1N1B4_239 -1.6 -3.2 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_3742 -1.6 -2.3 Oxidoreductase, zinc-binding compare
Pf1N1B4_2339 -1.6 -1.6 COG1872 compare
Pf1N1B4_5289 -1.6 -3.0 hypothetical protein compare
Pf1N1B4_163 -1.6 -3.4 ADP-ribosylglycohydrolase compare
Pf1N1B4_5483 -1.6 -1.8 hypothetical protein compare
Pf1N1B4_72 -1.6 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_5725 -1.6 -1.2 High-affinity iron permease compare
Pf1N1B4_2039 -1.6 -1.3 hypothetical protein compare
Pf1N1B4_1331 -1.6 -2.7 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_3775 -1.6 -2.1 FIG00956876: hypothetical protein compare
Pf1N1B4_1069 -1.6 -4.5 YrbA protein compare
Pf1N1B4_1461 -1.6 -3.4 Protein fixF compare
Pf1N1B4_3703 -1.6 -3.1 NLP/P60 family protein compare
Pf1N1B4_4336 -1.5 -2.2 FMN-dependent NADH-azoreductase compare
Pf1N1B4_3006 -1.5 -5.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_1105 -1.5 -1.8 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4107 -1.5 -1.4 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_224 -1.5 -2.0 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_3865 -1.5 -2.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_1695 -1.5 -0.8 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_5039 -1.5 -3.4 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_1294 -1.4 -1.5 VgrG protein compare
Pf1N1B4_2674 -1.4 -0.9 hypothetical protein compare
Pf1N1B4_3074 -1.4 -2.0 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_5972 -1.4 -3.4 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_3222 -1.4 -1.4 Ferredoxin compare
Pf1N1B4_3849 -1.4 -3.1 Transcriptional regulator, GntR family compare
Pf1N1B4_578 -1.4 -3.7 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_5838 -1.4 -2.9 FIG00956589: hypothetical protein compare
Pf1N1B4_4474 -1.3 -1.9 transcription regulator protein compare
Pf1N1B4_3997 -1.3 -2.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_5823 -1.3 -0.8 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_1726 -1.3 -4.7 Sulfate transport system permease protein CysT compare
Pf1N1B4_606 -1.3 -1.6 Iron siderophore sensor protein compare
Pf1N1B4_4417 -1.3 -1.8 Transcriptional regulator compare
Pf1N1B4_3048 -1.2 -3.7 Outer membrane lipoprotein omp16 precursor compare
Pf1N1B4_4754 -1.2 -2.0 GNAT family acetyltransferase VC2332 compare
Pf1N1B4_5470 -1.2 -3.1 hypothetical protein compare
Pf1N1B4_3536 -1.2 -3.0 SelT/selW/selH selenoprotein domain compare
Pf1N1B4_376 -1.2 -3.0 Deblocking aminopeptidase (EC 3.4.11.-) @ Cyanophycinase 2 (EC 3.4.15.6) compare
Pf1N1B4_3789 -1.2 -3.3 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_3836 -1.2 -2.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_4506 -1.2 -2.2 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_1724 -1.2 -3.7 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_4011 -1.2 -3.1 Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3) compare
Pf1N1B4_3785 -1.2 -1.8 FOG: Ankyrin repeat compare
Pf1N1B4_1511 -1.2 -1.7 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4175 -1.2 -3.3 Universal stress protein family 5 compare
Pf1N1B4_1463 -1.2 -4.8 hypothetical protein compare
Pf1N1B4_3900 -1.2 -2.2 Universal stress protein family COG0589 compare
Pf1N1B4_234 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_583 -1.1 -2.4 FIG00957748: hypothetical protein compare
Pf1N1B4_5584 -1.1 -1.7 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_4198 -1.1 -2.9 4-hydroxybenzoate transporter compare
Pf1N1B4_2189 -1.1 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_6036 -1.1 -2.0 FIG00953132: hypothetical protein compare
Pf1N1B4_275 -1.1 -1.8 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_4721 -1.1 -1.0 Nuclease inhibitor compare
Pf1N1B4_2925 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_1593 -1.1 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4835 -1.1 -1.8 Carbon starvation protein A compare
Pf1N1B4_1675 -1.1 -1.7 Transcriptional regulator compare
Pf1N1B4_4385 -1.1 -1.2 Gfa-like protein compare
Pf1N1B4_1517 -1.1 -2.6 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf1N1B4_5498 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_4969 -1.1 -1.7 FIG00956189: hypothetical protein compare
Pf1N1B4_139 -1.1 -2.1 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_1154 -1.1 -2.4 FIG00957702: hypothetical protein compare
Pf1N1B4_4136 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_2868 -1.1 -2.9 ABC-type hemin transport system, ATPase component compare
Pf1N1B4_2621 -1.1 -0.6 PspA/IM30 family protein compare
Pf1N1B4_5000 -1.1 -2.9 D-glycerate transporter (predicted) compare
Pf1N1B4_2085 -1.1 -1.7 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_716 -1.1 -2.3 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_5791 -1.1 -1.0 hypothetical protein compare
Pf1N1B4_4487 -1.1 -1.2 FIG00955631: hypothetical protein compare
Pf1N1B4_996 -1.1 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_1705 -1.1 -2.0 SAM-dependent methyltransferases compare
Pf1N1B4_3627 -1.1 -1.5 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_399 -1.1 -1.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_2889 -1.0 -3.4 FIG00954491: hypothetical protein compare
Pf1N1B4_4429 -1.0 -1.5 No significant database matches compare
Pf1N1B4_74 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_3334 -1.0 -3.3 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_1060 -1.0 -1.5 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1334 -1.0 -1.7 FIG00955840: hypothetical protein compare
Pf1N1B4_491 -1.0 -2.6 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf1N1B4_5997 -1.0 -2.0 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_5745 -1.0 -1.1 FIG139928: Putative protease compare
Pf1N1B4_5307 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_4523 -1.0 -1.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4993 -1.0 -2.5 Arabinose efflux permease compare
Pf1N1B4_1679 -1.0 -1.1 Membrane-fusion protein compare
Pf1N1B4_1967 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_516 -1.0 -2.3 Sensor histidine kinase compare
Pf1N1B4_1785 -1.0 -2.3 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_5926 -1.0 -6.7 hypothetical protein compare
Pf1N1B4_652 -1.0 -4.9 Sensory box histidine kinase compare
Pf1N1B4_5927 -1.0 -8.3 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_4482 -1.0 -2.3 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_901 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_1781 -1.0 -1.2 hypothetical protein compare
Pf1N1B4_5556 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_3614 -1.0 -3.4 Flagellar biosynthesis protein FliL compare
Pf1N1B4_5907 -1.0 -3.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Pf1N1B4_5720 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_5507 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1008 -1.0 -2.1 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2334 -1.0 -2.2 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_3264 -1.0 -1.9 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1613 -0.9 -1.0 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_984 -0.9 -2.5 Alginate biosynthesis protein Alg44 compare
Pf1N1B4_5552 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_2755 -0.9 -3.2 Xanthine/uracil/thiamine/ascorbate permease family protein compare
Pf1N1B4_5263 -0.9 -3.9 hypothetical protein compare
Pf1N1B4_3965 -0.9 -1.6 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_208 -0.9 -1.5 Two-component system response regulator QseB compare
Pf1N1B4_4716 -0.9 -2.4 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_3200 -0.9 -1.6 Outer membrane lipoprotein compare
Pf1N1B4_1891 -0.9 -1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_4386 -0.9 -2.0 Inositol transport system sugar-binding protein compare
Pf1N1B4_2105 -0.9 -0.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5924 -0.9 -4.5 hypothetical protein compare
Pf1N1B4_4727 -0.9 -2.2 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) compare
Pf1N1B4_3372 -0.9 -1.2 FIG00962464: hypothetical protein compare
Pf1N1B4_717 -0.9 -4.0 Iron-regulated protein A precursor compare
Pf1N1B4_4961 -0.9 -2.7 FIG00441227: hypothetical protein compare
Pf1N1B4_2486 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_3439 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_4127 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_5692 -0.9 -3.1 Nitrate/nitrite transporter compare
Pf1N1B4_4748 -0.9 -3.0 transporter, putative compare
Pf1N1B4_2004 -0.9 -1.4 putative membrane protein compare
Pf1N1B4_3906 -0.9 -2.7 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3604 -0.9 -2.6 Flagellar M-ring protein FliF compare
Pf1N1B4_3687 -0.9 -2.1 FIG00953885: hypothetical protein compare
Pf1N1B4_6045 -0.9 -1.1 CigR (Putative inner membrane protein) compare
Pf1N1B4_904 -0.9 -0.8 DNA-binding protein HU-beta compare
Pf1N1B4_5072 -0.9 -2.3 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_2469 -0.9 -2.1 Glutathione S-transferase family protein compare
Pf1N1B4_4246 -0.9 -2.1 L-lactate permease compare
Pf1N1B4_4437 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_5914 -0.9 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_50 -0.9 -2.6 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1017 -0.9 -2.1 FIG00957554: hypothetical protein compare
Pf1N1B4_4868 -0.9 -2.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_3188 -0.9 -3.3 FIG00953202: hypothetical protein compare
Pf1N1B4_4950 -0.9 -2.9 formate dehydrogenase formation protein FdhE compare
Pf1N1B4_4857 -0.9 -2.5 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2490 -0.8 -2.6 Biotin synthesis protein BioC compare
Pf1N1B4_4296 -0.8 -2.6 Histidine transporter, periplasmic histidine-binding protein compare
Pf1N1B4_3458 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_2757 -0.8 -1.7 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_2879 -0.8 -3.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2380 -0.8 -5.9 Cytochrome B561 compare
Pf1N1B4_4668 -0.8 -1.6 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_1300 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_5925 -0.8 -5.7 hypothetical protein compare
Pf1N1B4_2381 -0.8 -6.5 Protein yceI precursor compare


Specific Phenotypes

For 1 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For anaerobic Sodium pyruvate across organisms