Experiment set6IT069 for Pseudomonas fluorescens FW300-N1B4

Compare to:

N2E2wt with N1B4m denitrifying repB

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_866 +2.8 3.2 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3115 +2.6 16.9 RNA polymerase sigma factor RpoS compare
Pf1N1B4_3866 +1.9 4.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_4357 +1.8 4.2 Putrescine utilization regulator compare
Pf1N1B4_1569 +1.7 12.7 Twin-arginine translocation protein TatC compare
Pf1N1B4_3869 +1.6 12.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_1568 +1.5 3.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_1262 +1.5 7.8 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_4516 +1.4 2.7 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_3870 +1.4 11.9 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_63 +1.3 2.3 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_5031 +1.3 5.0 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_3871 +1.3 10.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3328 +1.2 3.5 Rhodanese-like domain protein compare
Pf1N1B4_101 +1.2 1.8 hypothetical protein compare
Pf1N1B4_4912 +1.2 3.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_3872 +1.2 6.9 Putative analog of CcoH, COG3198 compare
Pf1N1B4_4419 +1.2 2.4 Organosulfonate utilization protein SsuF compare
Pf1N1B4_2534 +1.2 1.7 DnaJ-like protein DjlA compare
Pf1N1B4_3331 +1.2 4.1 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_3485 +1.1 2.5 hypothetical protein compare
Pf1N1B4_4455 +1.1 2.2 FIG00953528: hypothetical protein compare
Pf1N1B4_960 +1.1 7.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3782 +1.1 3.7 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_3498 +1.1 2.0 FIG00953240: hypothetical protein compare
Pf1N1B4_3970 +1.1 5.1 Ferredoxin reductase compare
Pf1N1B4_909 +1.1 1.8 Ketosteroid isomerase-related protein compare
Pf1N1B4_138 +1.1 2.1 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_961 +1.1 8.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_3647 +1.1 7.2 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_962 +1.1 6.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_623 +1.1 2.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_1566 +1.1 4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1185 +1.1 5.5 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
Pf1N1B4_3390 +1.0 2.4 RNA polymerase sigma factor RpoE compare
Pf1N1B4_1958 +1.0 1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3625 +1.0 2.8 Flagellar synthesis regulator FleN compare
Pf1N1B4_4661 +1.0 2.9 Cell division inhibitor SULA compare
Pf1N1B4_4736 +1.0 1.8 Fap amyloid fibril minor component compare
Pf1N1B4_5294 +1.0 1.2 hypothetical protein compare
Pf1N1B4_5357 +1.0 1.1 hypothetical protein compare
Pf1N1B4_56 +1.0 2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4949 +1.0 2.0 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_4023 +1.0 3.1 hypothetical protein compare
Pf1N1B4_2372 +1.0 3.2 Transcriptional regulator, LysR family compare
Pf1N1B4_5029 +1.0 1.9 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_4544 +1.0 2.1 Uncharacterized protein ImpA compare
Pf1N1B4_5378 +1.0 3.2 Phage protein compare
Pf1N1B4_5708 +1.0 2.4 Transcriptional regulator, TetR family compare
Pf1N1B4_4980 +1.0 2.6 putative lipoprotein compare
Pf1N1B4_4814 +1.0 2.6 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_1683 +1.0 1.1 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4602 +1.0 2.7 Transcriptional regulators, LysR family compare
Pf1N1B4_1565 +0.9 2.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2783 +0.9 1.0 Transcription elongation factor GreB-related protein compare
Pf1N1B4_4839 +0.9 2.8 lipoprotein compare
Pf1N1B4_5306 +0.9 2.4 hypothetical protein compare
Pf1N1B4_4860 +0.9 1.5 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_3966 +0.9 2.7 serine/threonine protein kinase compare
Pf1N1B4_5370 +0.9 1.2 hypothetical protein compare
Pf1N1B4_2140 +0.9 3.3 FIG00957579: hypothetical protein compare
Pf1N1B4_733 +0.9 1.0 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_4472 +0.9 2.1 Transcriptional regulator, ArsR family compare
Pf1N1B4_4402 +0.9 1.7 SoxH protein, homolog compare
Pf1N1B4_3967 +0.9 2.5 AFG1-like ATPase compare
Pf1N1B4_2807 +0.9 2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5342 +0.9 1.9 hypothetical protein compare
Pf1N1B4_2247 +0.9 3.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_3764 +0.9 2.3 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_4824 +0.9 1.3 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_2412 +0.8 3.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_4897 +0.8 1.1 Transcriptional regulator, LysR family compare
Pf1N1B4_2711 +0.8 3.0 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_758 +0.8 2.7 Bacterioferritin compare
Pf1N1B4_4717 +0.8 1.1 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_4275 +0.8 1.7 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_5269 +0.8 2.2 hypothetical protein compare
Pf1N1B4_4355 +0.8 1.2 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_4448 +0.8 2.4 COGs COG2343 compare
Pf1N1B4_5123 +0.8 2.1 T1SS secreted agglutinin RTX compare
Pf1N1B4_2483 +0.8 2.6 DNA-binding domain of ModE / Molybdate-binding domain of ModE compare
Pf1N1B4_5533 +0.8 2.3 cobS protein, putative compare
Pf1N1B4_4358 +0.8 1.8 Acetyltransferase, GNAT family compare
Pf1N1B4_5835 +0.8 3.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_5509 +0.8 1.4 hypothetical protein compare
Pf1N1B4_899 +0.8 2.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_4132 +0.8 2.5 Mobile element protein compare
Pf1N1B4_2075 +0.8 1.3 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_164 +0.8 1.8 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_4169 +0.8 2.3 Hydrolases of the alpha/beta superfamily compare
Pf1N1B4_4138 +0.8 2.9 Dihydroflavonol-4-reductase (EC 1.1.1.219) compare
Pf1N1B4_1878 +0.8 4.6 Cytochrome c4 compare
Pf1N1B4_2061 +0.8 1.6 hypothetical protein compare
Pf1N1B4_5278 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4656 +0.7 2.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2228 +0.7 1.9 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_5013 +0.7 2.0 Cointegrate resolution protein T compare
Pf1N1B4_4551 +0.7 2.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_5387 +0.7 2.2 hypothetical protein compare
Pf1N1B4_4822 +0.7 2.2 Paraquat-inducible protein A compare
Pf1N1B4_188 +0.7 1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_99 +0.7 3.5 Purine nucleoside permease compare
Pf1N1B4_3853 +0.7 1.5 Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) compare
Pf1N1B4_2491 +0.7 1.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_3142 +0.7 2.6 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Pf1N1B4_5376 +0.7 2.7 hypothetical protein compare
Pf1N1B4_5460 +0.7 1.3 TolA protein compare
Pf1N1B4_2949 +0.7 0.8 FIG00956396: hypothetical protein compare
Pf1N1B4_5415 +0.7 2.5 hypothetical protein compare
Pf1N1B4_5607 +0.7 2.3 C4-dicarboxylate transport protein compare
Pf1N1B4_5302 +0.7 2.9 hypothetical protein compare
Pf1N1B4_3168 +0.7 1.7 AmpG permease compare
Pf1N1B4_2739 +0.7 1.5 acetyltransferase, GNAT family compare
Pf1N1B4_69 +0.7 1.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3121 +0.7 2.8 FIG111678: IS, phage, Tn; Transposon-related functions compare
Pf1N1B4_3818 +0.7 2.0 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_4975 +0.7 1.3 hypothetical protein compare
Pf1N1B4_2048 +0.7 1.4 hypothetical protein compare
Pf1N1B4_769 +0.7 2.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1430 +0.7 2.2 Predicted signal transduction protein compare
Pf1N1B4_3291 +0.7 2.9 Putative subunit of Alternative cytochrome c oxidase compare
Pf1N1B4_4345 +0.7 1.8 hypothetical protein compare
Pf1N1B4_3352 +0.7 2.6 tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) compare
Pf1N1B4_574 +0.7 1.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_5916 +0.7 1.4 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_4612 +0.7 1.2 FIG00954117: hypothetical protein compare
Pf1N1B4_875 +0.7 1.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_493 +0.7 2.1 hypothetical protein compare
Pf1N1B4_2005 +0.7 0.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2366 +0.7 1.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_3631 +0.7 3.3 Flagellar motor rotation protein MotA compare
Pf1N1B4_1704 +0.7 2.3 hypothetical protein compare
Pf1N1B4_2390 +0.7 1.4 probable membrane protein NMA1176 compare
Pf1N1B4_5663 +0.7 1.9 Periplasmic sugar-binding domain protein compare
Pf1N1B4_4777 +0.7 1.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_5476 +0.7 1.6 hypothetical protein compare
Pf1N1B4_3950 +0.7 2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1330 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4418 +0.7 2.0 hypothetical protein compare
Pf1N1B4_4960 +0.7 1.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3408 +0.7 1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_4711 +0.7 2.4 hypothetical protein compare
Pf1N1B4_122 +0.7 1.4 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_1257 +0.7 1.9 Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase compare
Pf1N1B4_2794 +0.7 1.2 FIG00953595: hypothetical protein compare
Pf1N1B4_3112 +0.7 2.3 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1348 +0.7 1.5 Urease accessory protein UreD compare
Pf1N1B4_1248 +0.7 1.8 Probable short-chain dehydrogenase compare
Pf1N1B4_4317 +0.7 1.7 DNA/RNA non-specific endonuclease compare
Pf1N1B4_2885 +0.7 3.1 Paraquat-inducible protein A compare
Pf1N1B4_3499 +0.7 0.5 hypothetical protein compare
Pf1N1B4_3356 +0.7 0.9 Cyclic nucleotide-binding protein compare
Pf1N1B4_3858 +0.6 2.3 FIG00954563: hypothetical protein compare
Pf1N1B4_691 +0.6 1.2 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_4207 +0.6 2.2 Transcriptional regulator compare
Pf1N1B4_5522 +0.6 2.4 hypothetical protein compare
Pf1N1B4_2392 +0.6 2.7 Cytochrome c556 compare
Pf1N1B4_5624 +0.6 1.4 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_3176 +0.6 2.0 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_1500 +0.6 3.1 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_2625 +0.6 2.3 hypothetical protein compare
Pf1N1B4_4882 +0.6 3.1 Transcriptional regulator MexT compare
Pf1N1B4_3809 +0.6 1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_2871 +0.6 2.1 FIG00954216: hypothetical protein compare
Pf1N1B4_3980 +0.6 1.2 Transcriptional regulator, HxlR family compare
Pf1N1B4_1619 +0.6 4.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_4412 +0.6 1.7 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_1780 +0.6 1.8 FIG00961586: hypothetical protein compare
Pf1N1B4_5329 +0.6 1.4 hypothetical protein compare
Pf1N1B4_2090 +0.6 2.0 FIG00959590: hypothetical protein compare
Pf1N1B4_4423 +0.6 1.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_1870 +0.6 1.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_4874 +0.6 1.7 hypothetical protein compare
Pf1N1B4_3093 +0.6 1.4 Outer membrane protein H precursor compare
Pf1N1B4_825 +0.6 1.4 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_120 +0.6 2.0 Channel-forming transporter/cytolysins activator of TpsB family compare
Pf1N1B4_49 +0.6 2.0 hypothetical protein compare
Pf1N1B4_4103 +0.6 1.2 Flagellar synthesis regulator FleN compare
Pf1N1B4_3978 +0.6 1.9 Catalase (EC 1.11.1.6) compare
Pf1N1B4_5368 +0.6 2.2 hypothetical protein compare
Pf1N1B4_5598 +0.6 1.3 hypothetical protein compare
Pf1N1B4_4831 +0.6 1.4 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_3337 +0.6 2.9 Transcriptional regulator, LysR family compare
Pf1N1B4_5239 +0.6 1.6 hypothetical protein compare
Pf1N1B4_5527 +0.6 1.6 hypothetical protein compare
Pf1N1B4_4459 +0.6 1.7 Thermostable hemolysin delta-VPH compare
Pf1N1B4_5833 +0.6 1.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_4517 +0.6 1.4 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_731 +0.6 0.8 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_4869 +0.6 2.4 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_4505 +0.6 1.2 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_488 +0.6 1.5 Cyn operon transcriptional activator compare
Pf1N1B4_2929 +0.6 2.2 COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA compare
Pf1N1B4_2112 +0.6 4.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3632 +0.6 2.2 Flagellar motor rotation protein MotB compare
Pf1N1B4_2695 +0.6 1.4 Rare lipoprotein A precursor compare
Pf1N1B4_3368 +0.6 1.2 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3787 +0.6 1.4 FIG00960829: hypothetical protein compare
Pf1N1B4_967 +0.6 1.5 hypothetical protein compare
Pf1N1B4_6013 +0.6 2.6 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For anaerobic Sodium pyruvate across organisms