Experiment set6IT069 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 2g/L casamino acids

200 most important genes:

  gene name fitness t score description  
MMP_RS08720 -5.4 -2.3 4Fe-4S binding protein compare
MMP_RS06355 -4.8 -4.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06285 -4.6 -4.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07845 -4.5 -3.2 LL-diaminopimelate aminotransferase compare
MMP_RS07635 -4.5 -12.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06350 -4.4 -8.4 HesA/MoeB/ThiF family protein compare
MMP_RS08715 -4.3 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07005 -4.2 -0.9 4Fe-4S binding protein compare
MMP_RS01175 -4.1 -7.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07435 -4.1 -2.9 GMP synthase subunit A compare
MMP_RS05515 -4.1 -10.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01500 -4.0 -4.1 CBS domain-containing protein compare
MMP_RS08300 -3.9 -2.0 metal-sulfur cluster assembly factor compare
MMP_RS01020 -3.9 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03015 -3.9 -13.1 GTP 3' 8-cyclase MoaA compare
MMP_RS00300 -3.8 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07735 -3.7 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08790 -3.5 -2.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS02010 -3.5 -12.2 PHP domain-containing protein compare
MMP_RS02195 -3.4 -5.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01610 -3.4 -4.4 hypothetical protein compare
MMP_RS06295 -3.3 -11.0 methanogenesis marker 14 protein compare
MMP_RS04710 -3.3 -1.9 hypothetical protein compare
MMP_RS00040 -3.3 -5.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS03400 -3.3 -4.2 archease compare
MMP_RS01385 -3.3 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03475 -3.3 -1.0 hypothetical protein compare
MMP_RS06475 -3.2 -5.9 FAD-dependent oxidoreductase compare
MMP_RS01325 -3.2 -3.6 dihydroneopterin aldolase family protein compare
MMP_RS06020 -3.1 -6.4 archaeoflavoprotein AfpA compare
MMP_RS01005 -3.1 -1.8 riboflavin synthase compare
MMP_RS08435 -3.0 -2.4 Era-like GTP-binding protein compare
MMP_RS03035 -3.0 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07755 -3.0 -1.4 DUF555 domain-containing protein compare
MMP_RS00695 -3.0 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03025 -3.0 -8.9 molybdenum cofactor guanylyltransferase compare
MMP_RS04780 -3.0 -4.4 ribonuclease P compare
MMP_RS07390 -2.9 -3.4 cell division protein FtsZ compare
MMP_RS02900 -2.9 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06370 -2.9 -7.1 biotin synthase BioB compare
MMP_RS09020 -2.9 -2.0 hypothetical protein compare
MMP_RS07750 -2.9 -5.0 DUF357 domain-containing protein compare
MMP_RS06885 -2.9 -3.3 50S ribosome-binding GTPase compare
MMP_RS03445 -2.9 -1.4 methanogenesis marker 17 protein compare
MMP_RS01960 -2.8 -1.2 hypothetical protein compare
MMP_RS06315 -2.8 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04685 -2.8 -3.8 DUF126 domain-containing protein compare
MMP_RS01755 -2.8 -1.9 DUF2097 domain-containing protein compare
MMP_RS06400 -2.8 -2.7 4Fe-4S binding protein compare
MMP_RS01220 -2.8 -9.3 hypothetical protein compare
MMP_RS04500 -2.8 -16.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05845 -2.6 -3.1 tRNA-intron lyase compare
MMP_RS02145 -2.6 -10.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS00895 -2.6 -5.1 hypothetical protein compare
MMP_RS00305 -2.6 -2.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS03580 -2.6 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS01725 -2.6 -7.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS03315 -2.6 -1.7 ferrous iron transport protein A compare
MMP_RS07600 -2.6 -4.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02800 -2.6 -5.8 nucleotidyltransferase domain-containing protein compare
MMP_RS08210 -2.5 -2.5 phosphatidylglycerophosphatase A compare
MMP_RS03435 -2.5 -2.4 ketol-acid reductoisomerase compare
MMP_RS01830 -2.5 -2.6 tRNA-Val compare
MMP_RS08095 -2.5 -7.9 dethiobiotin synthase compare
MMP_RS01225 -2.5 -6.8 DUF5379 domain-containing protein compare
MMP_RS01265 -2.5 -2.7 hypothetical protein compare
MMP_RS02240 -2.5 -3.1 methanogenesis marker 7 protein compare
MMP_RS05425 -2.5 -5.7 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07355 -2.5 -1.4 transcription factor S compare
MMP_RS04775 -2.4 -4.9 adenosylhomocysteinase compare
MMP_RS06925 -2.4 -3.9 ribonuclease VapC4 compare
MMP_RS06630 -2.4 -1.4 UPF0058 family protein compare
MMP_RS06625 -2.4 -2.5 DNA primase compare
MMP_RS01800 -2.4 -5.0 TIGR00303 family protein compare
MMP_RS01545 -2.3 -1.5 CBS domain-containing protein compare
MMP_RS08745 -2.3 -7.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06975 -2.3 -3.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07380 -2.3 -2.6 transcription elongation factor Spt5 compare
MMP_RS07730 -2.2 -2.3 pyruvate synthase subunit beta compare
MMP_RS02355 -2.2 -4.5 30S ribosomal protein S27ae compare
MMP_RS00110 -2.2 -3.4 hypothetical protein compare
MMP_RS00325 -2.2 -2.2 RNA-binding protein compare
MMP_RS00685 -2.1 -4.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07420 -2.1 -5.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00810 -2.1 -9.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08820 -2.1 -5.5 hypothetical protein compare
MMP_RS03095 -2.1 -9.7 diphthine synthase compare
MMP_RS07545 -2.1 -1.4 HTH domain-containing protein compare
MMP_RS07605 -2.1 -4.6 diadenylate cyclase compare
MMP_RS08460 -2.1 -3.1 proteasome-activating nucleotidase compare
MMP_RS07200 -2.1 -7.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05345 -2.1 -8.2 hypothetical protein compare
MMP_RS08100 -2.1 -6.8 8-amino-7-oxononanoate synthase compare
MMP_RS03640 -2.0 -4.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05920 -2.0 -0.8 50S ribosomal protein L37e compare
MMP_RS08105 -2.0 -8.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS02875 -2.0 -10.3 chorismate pyruvate-lyase family protein compare
MMP_RS05925 -2.0 -4.1 small nuclear ribonucleoprotein compare
MMP_RS01840 -2.0 -9.5 TIGR00289 family protein compare
MMP_RS01700 -2.0 -1.2 dihydroxy-acid dehydratase compare
MMP_RS06900 -2.0 -3.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS05245 -2.0 -11.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07645 -2.0 -8.5 aldehyde dehydrogenase family protein compare
MMP_RS01795 -1.9 -2.3 methanogenesis marker 6 protein compare
MMP_RS06980 -1.9 -7.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS06340 -1.9 -9.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00115 -1.9 -12.5 radical SAM protein compare
MMP_RS07090 -1.9 -10.0 tRNA (adenine-N1)-methyltransferase compare
MMP_RS02345 -1.9 -3.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04585 -1.9 -10.7 AIR synthase related protein compare
MMP_RS00915 -1.9 -7.9 DUF116 domain-containing protein compare
MMP_RS06270 -1.9 -5.5 TIGR00300 family protein compare
MMP_RS08650 -1.8 -4.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03140 -1.8 -10.5 hypothetical protein compare
MMP_RS06230 -1.8 -2.7 helix-turn-helix domain-containing protein compare
MMP_RS03205 -1.8 -2.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06105 -1.8 -8.3 hydrogenase maturation peptidase HycI compare
MMP_RS05555 -1.8 -1.9 DUF4040 domain-containing protein compare
MMP_RS04605 -1.8 -3.8 cobalt ECF transporter T component CbiQ compare
MMP_RS07195 -1.7 -9.1 M20 family metallo-hydrolase compare
MMP_RS01890 -1.7 -4.1 nucleotide sugar dehydrogenase compare
MMP_RS07580 -1.7 -2.9 DUF356 domain-containing protein compare
MMP_RS00515 -1.7 -1.1 DUF655 domain-containing protein compare
MMP_RS05550 -1.7 -0.9 cation:proton antiporter compare
MMP_RS06840 -1.7 -1.1 DNA-directed RNA polymerase subunit N compare
MMP_RS00050 -1.7 -8.0 AarF/UbiB family protein compare
MMP_RS08635 -1.7 -1.8 UbiA family prenyltransferase compare
MMP_RS03600 -1.6 -2.7 triose-phosphate isomerase compare
MMP_RS03145 -1.6 -5.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS05635 -1.6 -8.4 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS02135 -1.6 -4.3 DUF5612 domain-containing protein compare
MMP_RS03960 -1.6 -1.3 hypothetical protein compare
MMP_RS08440 -1.6 -2.8 cell division protein SepF compare
MMP_RS06940 -1.6 -3.1 polyprenyl diphosphate synthase compare
MMP_RS07710 -1.6 -7.2 cell division protein FtsZ compare
MMP_RS06130 -1.6 -3.2 peptidylprolyl isomerase compare
MMP_RS07705 -1.6 -8.7 transcriptional regulator compare
MMP_RS00985 -1.6 -4.9 CDC48 family AAA ATPase compare
MMP_RS02245 -1.5 -3.2 hypothetical protein compare
MMP_RS04900 -1.5 -12.4 hypothetical protein compare
MMP_RS03700 -1.5 -5.7 sodium:proton antiporter compare
MMP_RS06865 -1.5 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS04615 -1.5 -4.6 PDGLE domain-containing protein compare
MMP_RS01045 -1.5 -6.4 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS06730 -1.5 -1.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS05285 -1.5 -5.4 MMPL family transporter compare
MMP_RS05540 -1.4 -2.1 hypothetical protein compare
MMP_RS04890 -1.4 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03485 -1.4 -4.5 TIGR00267 family protein compare
MMP_RS03080 -1.4 -3.6 universal stress protein compare
MMP_RS03155 -1.4 -7.5 precorrin-6A reductase compare
MMP_RS08600 -1.4 -2.8 flagellar protein D compare
MMP_RS02280 -1.4 -1.0 DUF211 domain-containing protein compare
MMP_RS04870 -1.4 -4.1 TIGR02253 family HAD-type hydrolase compare
MMP_RS01180 -1.4 -2.7 XTP/dITP diphosphatase compare
MMP_RS03300 -1.4 -1.1 TOBE domain-containing protein compare
MMP_RS01875 -1.4 -5.0 N-acetyltransferase compare
MMP_RS08330 -1.4 -4.3 NADH-quinone oxidoreductase subunit H compare
MMP_RS06120 -1.4 -2.2 UPF0147 family protein compare
MMP_RS05580 -1.3 -9.8 glycosyltransferase compare
MMP_RS04955 -1.3 -5.0 DNA topoisomerase I compare
MMP_RS04875 -1.3 -6.7 energy-converting hydrogenase B subunit P compare
MMP_RS03420 -1.3 -2.6 acetolactate synthase small subunit compare
MMP_RS01880 -1.3 -3.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06035 -1.3 -7.1 glycosyltransferase family 2 protein compare
MMP_RS06215 -1.3 -2.5 30S ribosomal protein S6e compare
MMP_RS07330 -1.3 -10.2 membrane protein compare
MMP_RS02235 -1.3 -6.8 CBS domain-containing protein compare
MMP_RS05815 -1.3 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01030 -1.3 -3.3 MTAP family purine nucleoside phosphorylase compare
MMP_RS03250 -1.3 -2.7 MJ1244 family protein compare
MMP_RS08660 -1.3 -6.5 DHH family phosphoesterase compare
MMP_RS05430 -1.3 -4.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS07525 -1.2 -5.2 4Fe-4S binding protein compare
MMP_RS01975 -1.2 -8.2 hypothetical protein compare
MMP_RS08645 -1.2 -5.9 UPF0179 family protein compare
MMP_RS07425 -1.2 -4.9 GTP-binding protein compare
MMP_RS07860 -1.2 -0.9 hypothetical protein compare
MMP_RS08785 -1.2 -1.0 RNA-protein complex protein Nop10 compare
MMP_RS01600 -1.2 -2.5 50S ribosomal protein L15e compare
MMP_RS01365 -1.2 -2.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS05930 -1.2 -2.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS05280 -1.2 -6.0 COG1361 S-layer family protein compare
MMP_RS02885 -1.1 -8.3 molybdopterin biosynthesis protein compare
MMP_RS05440 -1.1 -5.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS05850 -1.1 -3.3 Ldh family oxidoreductase compare
MMP_RS05800 -1.1 -5.6 B12-binding domain-containing radical SAM protein compare
MMP_RS07540 -1.1 -2.8 CBS domain-containing protein compare
MMP_RS02165 -1.1 -6.6 tRNA-dihydrouridine synthase compare
MMP_RS08355 -1.1 -4.4 Na(+)/H(+) antiporter subunit B compare
MMP_RS05525 -1.1 -4.1 calcium/sodium antiporter compare
MMP_RS02190 -1.1 -1.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS04620 -1.1 -6.2 cobalt transporter CbiM compare
MMP_RS00900 -1.1 -1.6 50S ribosomal protein L39e compare
MMP_RS02930 -1.1 -2.2 class I SAM-dependent methyltransferase compare
MMP_RS05295 -1.0 -6.3 minichromosome maintenance protein MCM compare
MMP_RS08195 -1.0 -6.0 hypothetical protein compare
MMP_RS01665 -1.0 -1.6 DUF2111 domain-containing protein compare
MMP_RS07630 -1.0 -1.0 ATP-binding cassette domain-containing protein compare
MMP_RS08445 -1.0 -2.2 DUF2099 family protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source casamino acids in Methanococcus maripaludis S2

For nitrogen source casamino acids across organisms