Experiment set6IT068 for Pseudomonas fluorescens FW300-N1B4

Compare to:

N2E2wt with N1B4m denitrifying repA

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2706 -2.8 -3.3 FIG00954871: hypothetical protein compare
Pf1N1B4_2870 -2.8 -2.6 Regulator of competence-specific genes compare
Pf1N1B4_5031 -2.7 -5.1 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_3812 -2.7 -10.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_236 -2.6 -3.9 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_5030 -2.6 -7.1 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_578 -2.5 -5.4 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1724 -2.4 -5.0 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_1315 -2.4 -10.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3998 -2.3 -8.0 putative exported protein compare
Pf1N1B4_235 -2.3 -8.0 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_3997 -2.2 -8.3 Uncharacterized protein YtfM precursor compare
Pf1N1B4_418 -2.2 -8.6 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_1627 -2.2 -3.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2526 -2.2 -14.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1534 -2.2 -16.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1831 -2.2 -11.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_5736 -2.1 -4.7 Nitrate/nitrite transporter compare
Pf1N1B4_2880 -2.1 -11.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5666 -2.1 -4.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_15 -2.0 -5.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_899 -2.0 -2.6 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2303 -2.0 -11.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2548 -2.0 -6.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_611 -1.9 -3.4 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_1533 -1.9 -7.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_12 -1.9 -6.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_5729 -1.9 -8.3 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_6 -1.9 -5.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_742 -1.9 -8.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4065 -1.9 -8.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1726 -1.9 -5.8 Sulfate transport system permease protein CysT compare
Pf1N1B4_2338 -1.9 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3506 -1.8 -5.5 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5735 -1.8 -7.9 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_2384 -1.8 -8.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2549 -1.8 -7.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4835 -1.7 -2.7 Carbon starvation protein A compare
Pf1N1B4_1262 -1.7 -6.5 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_2545 -1.7 -11.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_139 -1.7 -3.6 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_2337 -1.7 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_350 -1.7 -5.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5738 -1.7 -6.4 Nitrate/nitrite transporter compare
Pf1N1B4_3906 -1.7 -5.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1725 -1.7 -9.0 Sulfate transport system permease protein CysW compare
Pf1N1B4_1830 -1.7 -6.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5187 -1.7 -1.9 5S RNA compare
Pf1N1B4_124 -1.6 -2.4 Mechanosensitive ion channel compare
Pf1N1B4_3038 -1.6 -6.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_1463 -1.6 -6.1 hypothetical protein compare
Pf1N1B4_5146 -1.6 -3.7 Chromosome initiation inhibitor compare
Pf1N1B4_5330 -1.6 -1.0 hypothetical protein compare
Pf1N1B4_5734 -1.6 -5.8 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_847 -1.6 -7.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1613 -1.6 -1.8 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_886 -1.6 -1.5 FIG137478: Hypothetical protein compare
Pf1N1B4_5740 -1.6 -3.8 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_1624 -1.6 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5029 -1.6 -1.9 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_5780 -1.6 -5.4 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_5665 -1.6 -5.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5659 -1.5 -7.5 NfuA Fe-S protein maturation compare
Pf1N1B4_2112 -1.5 -10.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3468 -1.5 -2.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3350 -1.5 -3.2 FIG00954807: hypothetical protein compare
Pf1N1B4_1307 -1.5 -1.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1626 -1.5 -5.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4474 -1.5 -2.3 transcription regulator protein compare
Pf1N1B4_4476 -1.5 -3.7 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_4299 -1.4 -2.9 sensor histidine kinase compare
Pf1N1B4_2036 -1.4 -3.6 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_5266 -1.4 -1.8 hypothetical protein compare
Pf1N1B4_237 -1.4 -2.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_3081 -1.4 -11.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3222 -1.4 -1.8 Ferredoxin compare
Pf1N1B4_3869 -1.4 -9.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_262 -1.4 -10.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_2280 -1.4 -7.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1408 -1.3 -5.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_114 -1.3 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3871 -1.3 -9.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3825 -1.3 -2.2 FIG00959101: hypothetical protein compare
Pf1N1B4_4716 -1.3 -2.2 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_3091 -1.2 -5.9 Membrane-associated zinc metalloprotease compare
Pf1N1B4_348 -1.2 -2.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2282 -1.2 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3751 -1.2 -1.7 FIG00953060: hypothetical protein compare
Pf1N1B4_1566 -1.2 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1069 -1.2 -3.6 YrbA protein compare
Pf1N1B4_652 -1.2 -6.2 Sensory box histidine kinase compare
Pf1N1B4_4039 -1.2 -3.0 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1569 -1.2 -7.6 Twin-arginine translocation protein TatC compare
Pf1N1B4_407 -1.2 -2.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_3870 -1.2 -9.0 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_1679 -1.2 -1.3 Membrane-fusion protein compare
Pf1N1B4_4802 -1.1 -2.2 polysaccharide deacetylase compare
Pf1N1B4_1837 -1.1 -1.5 Osmotically inducible protein C compare
Pf1N1B4_2854 -1.1 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_5699 -1.1 -1.9 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_1328 -1.1 -1.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_1565 -1.1 -2.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5927 -1.1 -9.9 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3518 -1.1 -2.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2879 -1.1 -3.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2547 -1.1 -2.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_284 -1.1 -7.9 Universal stress protein family compare
Pf1N1B4_1434 -1.1 -4.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2176 -1.1 -2.4 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_4678 -1.1 -3.7 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2872 -1.1 -6.7 FIG00955330: hypothetical protein compare
Pf1N1B4_5624 -1.1 -2.1 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_4745 -1.1 -2.5 Transcriptional regulator, LysR family compare
Pf1N1B4_769 -1.1 -3.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3684 -1.1 -3.6 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_3872 -1.1 -6.0 Putative analog of CcoH, COG3198 compare
Pf1N1B4_2283 -1.0 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_5745 -1.0 -1.4 FIG139928: Putative protease compare
Pf1N1B4_733 -1.0 -1.1 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_2284 -1.0 -3.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_722 -1.0 -1.9 SAM-dependent methyltransferases compare
Pf1N1B4_883 -1.0 -1.2 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_3868 -1.0 -4.0 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_197 -1.0 -2.1 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_767 -1.0 -3.5 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_1590 -1.0 -3.9 Histidine utilization repressor compare
Pf1N1B4_952 -1.0 -1.9 Cell division protein MraZ compare
Pf1N1B4_2144 -1.0 -5.9 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_2859 -1.0 -7.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3483 -1.0 -3.1 Transcriptional regulatory protein PhoP compare
Pf1N1B4_2987 -1.0 -3.1 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_2682 -1.0 -1.5 Antiholin-like protein LrgA compare
Pf1N1B4_2858 -1.0 -4.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_5353 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_4857 -1.0 -2.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_5926 -1.0 -7.5 hypothetical protein compare
Pf1N1B4_4477 -0.9 -2.2 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_5924 -0.9 -6.5 hypothetical protein compare
Pf1N1B4_5292 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_617 -0.9 -1.2 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_327 -0.9 -0.6 hypothetical protein compare
Pf1N1B4_1835 -0.9 -2.6 hypothetical protein compare
Pf1N1B4_2381 -0.9 -8.2 Protein yceI precursor compare
Pf1N1B4_239 -0.9 -2.1 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_3531 -0.9 -1.7 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_5507 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5779 -0.9 -2.3 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_1008 -0.9 -2.1 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_5711 -0.9 -2.4 Salicylate hydroxylase (EC 1.14.13.1) compare
Pf1N1B4_5763 -0.9 -1.9 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_4274 -0.9 -3.0 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain compare
Pf1N1B4_2380 -0.9 -7.6 Cytochrome B561 compare
Pf1N1B4_2936 -0.9 -5.4 Putative sulfate permease compare
Pf1N1B4_5760 -0.9 -2.5 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4140 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5777 -0.9 -1.7 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1370 -0.9 -0.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_5799 -0.9 -2.2 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf1N1B4_4257 -0.9 -1.5 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3446 -0.9 -1.0 Putative GTPases (G3E family) compare
Pf1N1B4_126 -0.9 -1.4 Pirin compare
Pf1N1B4_4960 -0.9 -2.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_101 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_2005 -0.9 -0.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2734 -0.9 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_4946 -0.9 -2.0 putative aminotransferase compare
Pf1N1B4_3006 -0.9 -3.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_5722 -0.8 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4051 -0.8 -2.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_681 -0.8 -3.0 FOG: GGDEF domain compare
Pf1N1B4_4106 -0.8 -2.9 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_1317 -0.8 -1.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_5925 -0.8 -6.1 hypothetical protein compare
Pf1N1B4_3917 -0.8 -2.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_1570 -0.8 -1.5 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_5747 -0.8 -2.0 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_152 -0.8 -2.0 ABC transporter, permease protein compare
Pf1N1B4_2145 -0.8 -1.7 Translation initiation inhibitor compare
Pf1N1B4_1340 -0.8 -1.6 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_2527 -0.8 -5.0 ApaG protein compare
Pf1N1B4_4198 -0.8 -1.6 4-hydroxybenzoate transporter compare
Pf1N1B4_4102 -0.8 -2.3 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_5437 -0.8 -3.0 hypothetical protein compare
Pf1N1B4_4897 -0.8 -1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_5864 -0.8 -1.9 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_5576 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_1535 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_2773 -0.8 -2.4 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_4646 -0.8 -3.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_133 -0.8 -1.9 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_1462 -0.8 -5.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3012 -0.8 -2.9 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_1974 -0.8 -2.0 L-lysine permease compare
Pf1N1B4_4103 -0.8 -1.1 Flagellar synthesis regulator FleN compare
Pf1N1B4_5756 -0.8 -2.4 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_4517 -0.8 -2.2 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_1675 -0.8 -1.7 Transcriptional regulator compare
Pf1N1B4_5781 -0.8 -3.4 Nitrous-oxide reductase (EC 1.7.99.6) compare
Pf1N1B4_448 -0.8 -1.7 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_567 -0.8 -1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare


Specific Phenotypes

For 2 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For anaerobic Sodium pyruvate across organisms