Experiment set6IT068 for Rhodospirillum rubrum S1H

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Succinic Acid; Light intensity 75 uM

200 most important genes:

  gene name fitness t score description  
Rru_A3425 -2.5 -8.7 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A3164 -2.4 -1.5 hypothetical protein (NCBI) compare
Rru_A1190 -2.3 -2.5 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A3227 -2.3 -10.6 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A2886 -2.3 -19.5 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A0617 -2.3 -3.4 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A3428 -2.2 -13.5 Tryptophan synthase (NCBI) compare
Rru_A0894 -2.2 -2.0 stress protein (NCBI) compare
Rru_A2421 -2.2 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A1928 -2.1 -13.8 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A1786 -2.1 -16.4 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A3751 -2.1 -10.1 Argininosuccinate synthase (NCBI) compare
Rru_A3267 -2.1 -7.5 Methionine biosynthesis MetW (NCBI) compare
Rru_A3599 -2.0 -1.3 20S proteasome, A and B subunits (NCBI) compare
Rru_A3276 -2.0 -6.6 Ornithine carbamoyltransferase (NCBI) compare
Rru_A0469 -2.0 -11.1 Ketol-acid reductoisomerase (NCBI) compare
Rru_A3214 -2.0 -12.7 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A3548 -2.0 -11.7 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A0624 -1.9 -6.3 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A3427 -1.9 -14.3 Tryptophan synthase, beta chain (NCBI) compare
Rru_A1530 -1.9 -11.5 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A0621 -1.9 -13.7 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A2974 -1.9 -6.4 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A0397 -1.9 -6.5 Argininosuccinate lyase (NCBI) compare
Rru_A2400 -1.9 -12.8 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A2404 -1.9 -10.0 Phosphoribulokinase (NCBI) compare
Rru_A2403 -1.9 -12.0 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A1189 -1.8 -9.9 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A0394 -1.8 -2.9 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A2975 -1.8 -8.6 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A1593 -1.8 -4.5 Peptidase M50, putative membrane-associated zinc metallopeptidase (NCBI) compare
Rru_A2055 -1.8 -2.0 Peptidase S49 (NCBI) compare
Rru_A0622 -1.8 -6.8 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A3162 -1.8 -11.0 Prephenate dehydratase (NCBI) compare
Rru_A2772 -1.7 -2.5 ATP phosphoribosyltransferase (NCBI) compare
Rru_A1827 -1.7 -6.9 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A0615 -1.7 -3.7 photosynthetic complex assembly protein (NCBI) compare
Rru_A3173 -1.7 -1.1 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A2798 -1.7 -2.6 hypothetical protein (NCBI) compare
Rru_A1167 -1.7 -1.6 putative hydrogenase expression/formation protein HupK (NCBI) compare
Rru_A3341 -1.7 -1.1 Acetylglutamate kinase (NCBI) compare
Rru_A2979 -1.7 -5.5 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A0670 -1.6 -1.4 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A0752 -1.6 -1.4 hypothetical protein (NCBI) compare
Rru_A3266 -1.6 -7.1 Homoserine O-acetyltransferase (NCBI) compare
Rru_A3754 -1.6 -2.8 hypothetical protein (NCBI) compare
Rru_A0613 -1.6 -5.1 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A2524 -1.6 -9.8 Peptidase U32 (NCBI) compare
Rru_A2978 -1.6 -5.3 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0128 -1.6 -1.4 Na+/H+ antiporter NhaA (NCBI) compare
Rru_A2510 -1.6 -1.3 hypothetical protein (NCBI) compare
Rru_A0467 -1.6 -10.9 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A1896 -1.6 -7.6 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A1897 -1.5 -2.8 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A2193 -1.5 -11.0 Abc1 protein (NCBI) compare
Rru_A1063 -1.5 -1.5 putative transcription regulator protein (NCBI) compare
Rru_A2907 -1.5 -0.7 Anti-Sigma-factor antagonist (STAS) domain protein (NCBI) compare
Rru_A3139 -1.5 -6.7 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A1112 -1.5 -0.5 hypothetical protein (NCBI) compare
Rru_A2525 -1.5 -7.3 Peptidase U32 (NCBI) compare
Rru_A0024 -1.5 -1.3 peptidase (NCBI) compare
Rru_A0485 -1.4 -3.7 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A3277 -1.4 -5.5 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A2167 -1.4 -2.6 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0486 -1.4 -3.3 von Willebrand factor, type A (NCBI) compare
Rru_A1895 -1.3 -2.3 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A0404 -1.3 -10.5 Amidophosphoribosyl transferase (NCBI) compare
Rru_A1191 -1.3 -5.6 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A0203 -1.3 -0.9 hypothetical protein (NCBI) compare
Rru_A1955 -1.3 -2.1 Phosphoribosyltransferase (NCBI) compare
Rru_A2445 -1.3 -2.2 Protein of unknown function DUF140 (NCBI) compare
Rru_A2478 -1.2 -5.0 ArgK protein (NCBI) compare
Rru_A3264 -1.2 -5.9 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A1333 -1.2 -1.2 BioY protein (NCBI) compare
Rru_A0629 -1.2 -6.3 Geranylgeranyl reductase (NCBI) compare
Rru_A3271 -1.2 -3.2 glutathione S-transferase family protein (NCBI) compare
Rru_A2980 -1.2 -4.3 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A3270 -1.2 -3.5 Hydroxyacylglutathione hydrolase (NCBI) compare
Rru_A1105 -1.2 -2.9 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A1319 -1.2 -2.1 Triphosphoribosyl-dephospho-CoA synthase (NCBI) compare
Rru_A0118 -1.2 -1.7 type II secretion system protein E (NCBI) compare
Rru_A0908 -1.2 -0.9 microcompartments protein (NCBI) compare
Rru_A0618 -1.2 -5.4 PUCC protein (NCBI) compare
Rru_A3594 -1.2 -0.7 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A0023 -1.2 -1.1 hypothetical protein (NCBI) compare
Rru_A0741 -1.2 -6.5 Signal Transduction Histidine Kinase (NCBI) compare
Rru_A0620 -1.2 -3.1 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A1179 -1.2 -0.8 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0654 -1.1 -3.1 Multiple antibiotic resistance (MarC)-related proteins (NCBI) compare
Rru_A0329 -1.1 -2.0 hypothetical protein (NCBI) compare
Rru_A2936 -1.1 -6.1 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A2803 -1.1 -2.4 putative thioredoxin (NCBI) compare
Rru_A3282 -1.1 -4.2 hypothetical protein (NCBI) compare
Rru_A3426 -1.0 -8.1 hypothetical protein (NCBI) compare
Rru_A3395 -1.0 -5.9 Transcriptional Regulator, LuxR family (NCBI) compare
Rru_A0382 -1.0 -1.7 Transcriptional Regulator, MerR family (NCBI) compare
Rru_A1866 -1.0 -4.8 Lytic transglycosylase, catalytic (NCBI) compare
Rru_A1310 -1.0 -2.9 Acetyl-CoA C-acyltransferase (NCBI) compare
Rru_A0561 -1.0 -5.5 Cytochrome bd ubiquinol oxidase, subunit II (NCBI) compare
Rru_A1309 -1.0 -2.9 acetoacetyl-CoA reductase (NCBI) compare
Rru_A3693 -1.0 -2.6 Protein of unknown function UPF0011 (NCBI) compare
Rru_A2895 -1.0 -4.0 Twin-arginine translocation pathway signal (NCBI) compare
Rru_A1432 -1.0 -6.5 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A1909 -1.0 -3.6 hypothetical protein (NCBI) compare
Rru_A1031 -1.0 -2.2 Ethanolamine ammonia-lyase (NCBI) compare
Rru_A2233 -1.0 -2.6 transcriptional regulatory protein (NCBI) compare
Rru_B0005 -1.0 -0.3 Glycosyl transferase (NCBI) compare
Rru_A0164 -1.0 -5.3 Sulfate transporter/antisigma-factor antagonist (NCBI) compare
Rru_A0977 -1.0 -0.8 hypothetical protein (NCBI) compare
Rru_A2894 -1.0 -2.5 ABC transporter component (NCBI) compare
Rru_A2986 -0.9 -3.9 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A1219 -0.9 -4.7 Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains (NCBI) compare
Rru_A3542 -0.9 -6.4 malate dehydrogenase (NCBI) compare
Rru_A1048 -0.9 -0.6 Protein of unknown function DUF465 (NCBI) compare
Rru_A3466 -0.9 -5.1 Ornithine aminotransferase (NCBI) compare
Rru_A0525 -0.9 -5.1 Two component Transcriptional regulator, Winged helix family (NCBI) compare
Rru_A0273 -0.9 -5.0 Acetoacetyl-CoA reductase (NCBI) compare
Rru_A3305 -0.9 -3.3 ABC transporter component (NCBI) compare
Rru_A0432 -0.9 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A0509 -0.9 -4.1 hypothetical protein (NCBI) compare
Rru_A2984 -0.9 -4.3 CrtD protein (NCBI) compare
Rru_A2042 -0.9 -3.9 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) compare
Rru_A3165 -0.9 -3.6 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2184 -0.9 -1.6 Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI) compare
Rru_A2951 -0.9 -0.6 hypothetical protein (NCBI) compare
Rru_A0514 -0.9 -5.2 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A2308 -0.9 -2.2 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A2472 -0.9 -4.1 hypothetical protein (NCBI) compare
Rru_A2057 -0.9 -0.3 Molybdopterin-guanine dinucleotide biosynthesis MobB region (NCBI) compare
Rru_A0665 -0.9 -1.4 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A0562 -0.9 -0.7 Peptidase S1 and S6, chymotrypsin/Hap (NCBI) compare
Rru_A3549 -0.9 -3.4 Cobyric acid synthase CobQ (NCBI) compare
Rru_A3399 -0.9 -2.4 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A3580 -0.8 -4.1 Protein of unknown function DUF6, transmembrane (NCBI) compare
Rru_A2987 -0.8 -2.2 hypothetical protein (NCBI) compare
Rru_A2391 -0.8 -1.8 hypothetical protein (NCBI) compare
Rru_A3510 -0.8 -4.4 ABC transporter component (NCBI) compare
Rru_A1999 -0.8 -1.0 hypothetical protein (NCBI) compare
Rru_A0086 -0.8 -0.7 Protein of unknown function DUF188 (NCBI) compare
Rru_A0580 -0.8 -1.4 OsmC-like protein (NCBI) compare
Rru_A3744 -0.8 -2.0 Predicted signal-transduction protein containing CBS domains (NCBI) compare
Rru_A1937 -0.8 -0.9 hypothetical protein (NCBI) compare
Rru_A3254 -0.8 -1.6 ABC transporter component (NCBI) compare
Rru_A1044 -0.8 -3.4 Peptide deformylase (NCBI) compare
Rru_A3660 -0.8 -3.2 tRNA and rRNA cytosine-C5-methylase (NCBI) compare
Rru_A1434 -0.8 -4.8 Quinolinate synthetase A (NCBI) compare
Rru_A0627 -0.8 -2.2 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A2070 -0.8 -2.6 FAD dependent oxidoreductase (NCBI) compare
Rru_A2201 -0.8 -2.4 Peptidase S1C, Do (NCBI) compare
Rru_A2892 -0.8 -3.2 ABC-3 transporter component (NCBI) compare
Rru_A2259 -0.8 -2.9 hypothetical protein (NCBI) compare
Rru_A3362 -0.8 -3.5 Uroporphyrin-III C-methyltransferase-like (NCBI) compare
Rru_A2973 -0.8 -4.6 Peptidase M16-like (NCBI) compare
Rru_A1982 -0.8 -1.8 SEC-C domain protein (NCBI) compare
Rru_A1523 -0.8 -2.2 Hemerythrin (NCBI) compare
Rru_A1177 -0.8 -3.8 chemotaxis sensory transducer (NCBI) compare
Rru_A0967 -0.8 -0.8 Carbon-monoxide dehydrogenase (NCBI) compare
Rru_A3603 -0.8 -1.8 Protein of unknown function DUF162 (NCBI) compare
Rru_A0824 -0.7 -2.8 no description compare
Rru_A0892 -0.7 -1.6 stress protein (NCBI) compare
Rru_A3602 -0.7 -1.9 Smr protein/MutS2-like (NCBI) compare
Rru_A1439 -0.7 -1.7 Putative FecR (NCBI) compare
Rru_A0139 -0.7 -1.3 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A1180 -0.7 -1.3 Major facilitator superfamily MFS_1 (NCBI) compare
Rru_AR0059 -0.7 -1.8 tRNA-Gly (NCBI) compare
Rru_A3528 -0.7 -0.4 hypothetical protein (NCBI) compare
Rru_A1470 -0.7 -0.5 hypothetical protein (NCBI) compare
Rru_A2464 -0.7 -2.8 Hydroxypyruvate reductase (NCBI) compare
Rru_A2721 -0.7 -4.4 2-oxoglutarate synthase, alpha subunit (NCBI) compare
Rru_A2020 -0.7 -1.4 Plasmid maintenance system killer (NCBI) compare
Rru_A3190 -0.7 -3.7 Aspartate carbamoyltransferase (NCBI) compare
Rru_A0369 -0.7 -2.4 ATPase associated with various cellular activities, AAA_3 (NCBI) compare
Rru_A2428 -0.7 -2.9 DSBA oxidoreductase (NCBI) compare
Rru_A3009 -0.7 -2.1 Aminotransferase class-III (NCBI) compare
Rru_A1308 -0.7 -3.2 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A3762 -0.7 -1.1 Peptidase M15D, vanX D-ala-D-ala dipeptidase (NCBI) compare
Rru_A0097 -0.7 -1.2 Class I peptide chain release factor (NCBI) compare
Rru_A2043 -0.7 -2.6 hypothetical protein (NCBI) compare
Rru_A1218 -0.7 -0.5 phage shock protein A, PspA (NCBI) compare
Rru_A2609 -0.7 -0.4 hypothetical protein (NCBI) compare
Rru_A2049 -0.7 -2.4 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A3328 -0.7 -2.7 OmpA/MotB (NCBI) compare
Rru_A1264 -0.7 -2.4 Short-chain dehydrogenase/reductase SDR (NCBI) compare
Rru_A2083 -0.7 -2.7 CreA (NCBI) compare
Rru_A0227 -0.7 -2.2 hypothetical protein (NCBI) compare
Rru_A1321 -0.7 -1.4 Biotin--acetyl-CoA-carboxylase ligase (NCBI) compare
Rru_A0616 -0.6 -3.1 photosynthetic complex assembly protein (NCBI) compare
Rru_A1854 -0.6 -4.1 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A3445 -0.6 -4.9 Phosphoenolpyruvate-protein phosphotransferase (NCBI) compare
Rru_A2706 -0.6 -1.1 Ankyrin (NCBI) compare
Rru_A2241 -0.6 -1.6 hypothetical protein (NCBI) compare
Rru_A2161 -0.6 -5.2 Polyphosphate kinase (NCBI) compare
Rru_A3635 -0.6 -1.5 hypothetical protein (NCBI) compare
Rru_A0032 -0.6 -1.5 TPR repeat (NCBI) compare
Rru_A0074 -0.6 -4.4 Helicase-like (NCBI) compare
Rru_A0091 -0.6 -0.7 PilT protein-like (NCBI) compare
Rru_A1494 -0.6 -3.5 hypothetical protein (NCBI) compare
Rru_A3527 -0.6 -1.3 Protein of unknown function YGGT (NCBI) compare
Rru_A0046 -0.6 -2.2 Protein of unknown function DUF523 (NCBI) compare
Rru_A2766 -0.6 -1.5 Protein of unknown function DUF329 (NCBI) compare


Specific Phenotypes

For 1 genes in this experiment

For light Succinic Acid in Rhodospirillum rubrum S1H

For light Succinic Acid across organisms