Experiment set6IT068 for Bifidobacterium breve UCC2003

reconstituted MRS with Inulin 0.8 mM

Group: carbon source
Media: reconstituted MRS + Inulin from chicory (0.8 mM), pH=6.8
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 7/16/2020

Specific Phenotypes

For 9 genes in this experiment

For carbon source Inulin from chicory in Bifidobacterium breve UCC2003

For carbon source Inulin from chicory across organisms

SEED Subsystems

Subsystem	#Specific
Fructooligosaccharides(FOS) and Raffinose Utilization	2
Bacterial RNA-metabolizing Zn-dependent hydrolases	1
Beta-Glucoside Metabolism	1
Conserved gene cluster associated with Met-tRNA formyltransferase	1
Queuosine-Archaeosine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Cyanoamino acid metabolism
• Starch and sucrose metabolism
• Phenylpropanoid biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
neolinustatin bioactivation	3	2	2
linustatin bioactivation	4	2	2
linamarin degradation	2	1	1
lotaustralin degradation	2	1	1
cellulose degradation II (fungi)	3	1	1
coumarin biosynthesis (via 2-coumarate)	5	2	1
α-tomatine degradation	6	1	1
firefly bioluminescence	14	2	1