Experiment set6IT067 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium deoxycholate monohydrate 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4556 -5.6 -3.6 FIG00953078: hypothetical protein compare
Pf6N2E2_4479 -5.4 -2.2 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3610 -5.2 -5.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2472 -5.1 -4.3 hypothetical protein compare
Pf6N2E2_5704 -5.1 -6.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_4584 -5.1 -2.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3617 -4.9 -3.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_434 -4.8 -2.0 hypothetical protein compare
Pf6N2E2_5128 -4.8 -4.1 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5622 -4.8 -2.4 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_1694 -4.8 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5252 -4.6 -1.9 FIG00956396: hypothetical protein compare
Pf6N2E2_5841 -4.5 -1.1 GlcG protein compare
Pf6N2E2_2473 -4.5 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_75 -4.5 -3.2 Colicin V production protein compare
Pf6N2E2_4451 -4.5 -5.3 FIG139438: lipoprotein B compare
Pf6N2E2_3253 -4.4 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_464 -4.4 -2.4 Sensory histidine kinase QseC compare
Pf6N2E2_4585 -4.3 -12.1 Cell division protein FtsX compare
Pf6N2E2_2013 -4.3 -1.0 hypothetical protein compare
Pf6N2E2_3264 -4.3 -2.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3792 -4.3 -7.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_445 -4.3 -5.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3252 -4.3 -5.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3791 -4.2 -9.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5150 -4.2 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2507 -4.2 -4.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2940 -4.2 -6.1 OmpA family protein compare
Pf6N2E2_3003 -4.2 -2.2 Bacteriophage protein GP46 compare
Pf6N2E2_3095 -4.1 -1.0 hypothetical protein compare
Pf6N2E2_4181 -4.1 -1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_4044 -4.0 -4.1 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_3305 -4.0 -2.2 hypothetical protein compare
Pf6N2E2_5014 -4.0 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3021 -4.0 -1.0 hypothetical protein compare
Pf6N2E2_6058 -4.0 -5.4 FIG139976: hypothetical protein compare
Pf6N2E2_4541 -4.0 -1.0 hypothetical protein compare
Pf6N2E2_2506 -3.9 -11.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4993 -3.9 -2.9 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2869 -3.9 -1.6 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2384 -3.9 -3.7 CmpX compare
Pf6N2E2_3666 -3.9 -4.3 InaA protein compare
Pf6N2E2_2509 -3.8 -1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3251 -3.8 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3611 -3.8 -1.6 HflC protein compare
Pf6N2E2_6140 -3.8 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1215 -3.7 -2.7 probable membrane protein YPO2362 compare
Pf6N2E2_204 -3.7 -1.5 hypothetical protein compare
Pf6N2E2_3480 -3.7 -1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_2510 -3.7 -2.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5178 -3.6 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3658 -3.6 -6.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3753 -3.6 -14.2 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_1886 -3.6 -1.5 hypothetical protein compare
Pf6N2E2_4077 -3.6 -2.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3839 -3.6 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_6100 -3.5 -1.7 tRNA-Val-TAC compare
Pf6N2E2_2425 -3.5 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3325 -3.5 -2.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_5956 -3.5 -7.4 FIG004453: protein YceG like compare
Pf6N2E2_3842 -3.5 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5523 -3.5 -3.4 Small-conductance mechanosensitive channel compare
Pf6N2E2_2995 -3.5 -3.2 FIG00959768: hypothetical protein compare
Pf6N2E2_5068 -3.4 -12.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3351 -3.4 -4.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5242 -3.4 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3942 -3.4 -8.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3303 -3.4 -4.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2640 -3.4 -1.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5705 -3.4 -2.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3841 -3.4 -5.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5245 -3.3 -8.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5943 -3.3 -1.9 hypothetical protein compare
Pf6N2E2_5316 -3.3 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2508 -3.3 -3.2 hypothetical protein compare
Pf6N2E2_5544 -3.2 -9.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5430 -3.2 -9.4 Transglycosylase, Slt family compare
Pf6N2E2_1305 -3.2 -2.8 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2756 -3.2 -7.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_1617 -3.2 -1.1 COG2199: FOG: GGDEF domain compare
Pf6N2E2_1683 -3.1 -1.9 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_1136 -3.1 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4928 -3.1 -1.1 Permeases of the major facilitator superfamily compare
Pf6N2E2_4205 -3.1 -4.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2824 -3.1 -10.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4369 -3.1 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2474 -3.1 -7.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2825 -3.1 -3.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4204 -3.0 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3783 -3.0 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_1893 -3.0 -3.0 hypothetical protein compare
Pf6N2E2_5727 -3.0 -6.9 FIG00955360: hypothetical protein compare
Pf6N2E2_2855 -3.0 -3.2 DGPFAETKE compare
Pf6N2E2_919 -3.0 -1.5 FIG00954373: hypothetical protein compare
Pf6N2E2_3782 -3.0 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1128 -3.0 -1.4 Two-component response regulator compare
Pf6N2E2_3696 -3.0 -1.0 hypothetical protein compare
Pf6N2E2_3612 -3.0 -1.9 HflK protein compare
Pf6N2E2_5172 -3.0 -3.3 FOG: TPR repeat compare
Pf6N2E2_2217 -3.0 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2574 -2.9 -1.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_2340 -2.9 -4.9 Transcriptional regulator, GntR family compare
Pf6N2E2_2480 -2.9 -1.0 FIG00957636: hypothetical protein compare
Pf6N2E2_928 -2.9 -2.0 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_5069 -2.9 -4.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4611 -2.9 -4.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2218 -2.9 -2.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5183 -2.9 -11.4 Paraquat-inducible protein B compare
Pf6N2E2_3198 -2.9 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5103 -2.9 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3515 -2.9 -7.2 Probable transmembrane protein compare
Pf6N2E2_2261 -2.8 -3.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_338 -2.8 -1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_3074 -2.8 -1.0 FIG00960973: hypothetical protein compare
Pf6N2E2_3661 -2.8 -2.7 hypothetical protein compare
Pf6N2E2_1293 -2.8 -1.6 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_3206 -2.8 -0.9 hypothetical protein compare
Pf6N2E2_3260 -2.8 -1.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4417 -2.8 -4.6 Protein of unknown function DUF484 compare
Pf6N2E2_2823 -2.8 -5.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5006 -2.8 -6.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2440 -2.7 -0.9 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5182 -2.7 -7.2 Paraquat-inducible protein A compare
Pf6N2E2_605 -2.7 -2.3 FIG002465: BNR repeat protein compare
Pf6N2E2_3941 -2.7 -3.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4362 -2.7 -2.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5508 -2.6 -1.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4307 -2.6 -3.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_4071 -2.6 -3.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4499 -2.6 -2.1 protein of unknown function DUF86 compare
Pf6N2E2_3460 -2.6 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2127 -2.6 -4.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5671 -2.6 -2.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5188 -2.5 -3.9 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4477 -2.5 -2.2 Z-ring-associated protein ZapA compare
Pf6N2E2_2258 -2.5 -7.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5001 -2.5 -1.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_664 -2.5 -1.9 Acetoin catabolism protein X compare
Pf6N2E2_3659 -2.5 -4.2 Protein fixF compare
Pf6N2E2_3940 -2.4 -9.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2752 -2.4 -7.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4353 -2.4 -2.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4273 -2.4 -7.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_449 -2.4 -2.3 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_5703 -2.4 -4.5 outer membrane protein H1 compare
Pf6N2E2_1056 -2.4 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_6063 -2.4 -7.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_5340 -2.4 -3.5 Stringent starvation protein A compare
Pf6N2E2_2514 -2.4 -3.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4364 -2.4 -1.9 Protein YicC compare
Pf6N2E2_4762 -2.4 -1.6 Biotin synthesis protein BioH compare
Pf6N2E2_2126 -2.4 -6.1 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3529 -2.4 -1.4 Toxin A compare
Pf6N2E2_1294 -2.4 -1.7 Carbon starvation protein A compare
Pf6N2E2_5435 -2.4 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3258 -2.3 -4.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1676 -2.3 -1.7 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3323 -2.3 -3.0 hypothetical protein compare
Pf6N2E2_288 -2.3 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2471 -2.3 -5.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_241 -2.3 -0.9 hypothetical protein compare
Pf6N2E2_5733 -2.3 -3.1 NLP/P60 family protein compare
Pf6N2E2_3171 -2.3 -0.9 hypothetical protein compare
Pf6N2E2_248 -2.3 -6.3 hypothetical protein compare
Pf6N2E2_4206 -2.3 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5181 -2.3 -8.1 Paraquat-inducible protein A compare
Pf6N2E2_2181 -2.2 -1.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2420 -2.2 -1.7 hypothetical protein compare
Pf6N2E2_3257 -2.2 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1838 -2.2 -2.1 6-hexanolactone hydrolase compare
Pf6N2E2_4691 -2.2 -1.1 hypothetical protein compare
Pf6N2E2_5428 -2.2 -5.4 DNA recombination and repair protein RecO compare
Pf6N2E2_2938 -2.2 -3.4 Outer membrane lipoprotein compare
Pf6N2E2_3806 -2.2 -2.1 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_3833 -2.2 -3.6 hypothetical protein compare
Pf6N2E2_1169 -2.2 -1.4 TnpR protein compare
Pf6N2E2_2121 -2.2 -1.7 hypothetical protein compare
Pf6N2E2_444 -2.2 -2.0 hypothetical protein compare
Pf6N2E2_3096 -2.2 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_292 -2.1 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_4075 -2.1 -5.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3517 -2.1 -4.7 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_2067 -2.1 -9.2 cis/trans isomerase compare
Pf6N2E2_3607 -2.1 -7.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2207 -2.1 -3.3 cytochrome b(561) compare
Pf6N2E2_4453 -2.1 -10.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2588 -2.1 -2.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2863 -2.1 -5.0 Gluconate permease compare
Pf6N2E2_906 -2.0 -2.2 ISPpu14, transposase Orf2 compare
Pf6N2E2_3834 -2.0 -3.6 Lipoprotein NlpD compare
Pf6N2E2_3132 -2.0 -2.6 FIG00954548: hypothetical protein compare
Pf6N2E2_3240 -2.0 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2022 -2.0 -5.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5084 -2.0 -8.1 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_4155 -2.0 -6.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3908 -2.0 -5.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5328 -2.0 -3.7 FIG00958649: hypothetical protein compare
Pf6N2E2_2195 -2.0 -2.5 cI compare
Pf6N2E2_4342 -2.0 -2.2 Protein phosphatase ImpM compare
Pf6N2E2_5155 -2.0 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare


Specific Phenotypes

For 11 genes in this experiment

For stress Sodium deoxycholate monohydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium deoxycholate monohydrate across organisms