Experiment set6IT064 for Pseudomonas fluorescens FW300-N2E3

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Minimal media pH9

200 most important genes:

  gene name fitness t score description  
AO353_09875 -5.1 -2.7 hypothetical protein compare
AO353_03410 -5.1 -3.1 chemotaxis protein CheY compare
AO353_05520 -4.6 -4.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_13165 -4.6 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07210 -4.5 -4.4 indole-3-glycerol-phosphate synthase compare
AO353_20695 -4.5 -7.4 O-succinylhomoserine sulfhydrylase compare
AO353_01190 -4.4 -2.7 hypothetical protein compare
AO353_05115 -4.3 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13070 -4.2 -7.6 phosphoserine phosphatase compare
AO353_21445 -4.2 -4.3 cation:proton antiporter compare
AO353_12070 -4.2 -8.0 imidazoleglycerol-phosphate dehydratase compare
AO353_06355 -4.1 -2.9 thiamine-phosphate pyrophosphorylase compare
AO353_02940 -4.1 -4.9 DNA-binding protein compare
AO353_13100 -4.1 -2.8 GTPase RsgA compare
AO353_14990 -4.1 -2.7 hypothetical protein compare
AO353_12520 -4.1 -10.6 glutamate synthase compare
AO353_20665 -4.0 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20635 -4.0 -14.0 3-isopropylmalate dehydrogenase compare
AO353_03360 -4.0 -8.1 glucose-6-phosphate dehydrogenase compare
AO353_03415 -4.0 -5.4 glucokinase compare
AO353_18715 -4.0 -2.5 histidine kinase compare
AO353_06390 -3.9 -6.6 magnesium transporter compare
AO353_07505 -3.9 -9.4 dethiobiotin synthetase compare
AO353_00310 -3.9 -10.2 transaldolase compare
AO353_24340 -3.8 -2.9 TetR family transcriptional regulator compare
AO353_08215 -3.8 -4.5 thiazole synthase compare
AO353_07525 -3.8 -15.1 biotin synthase compare
AO353_06460 -3.8 -9.5 hypothetical protein compare
AO353_09000 -3.8 -3.7 argininosuccinate lyase compare
AO353_20625 -3.8 -4.5 3-isopropylmalate dehydratase compare
AO353_12515 -3.8 -22.4 glutamate synthase compare
AO353_12085 -3.8 -8.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07510 -3.8 -11.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07215 -3.8 -7.6 anthranilate phosphoribosyltransferase compare
AO353_08180 -3.7 -13.2 homoserine O-acetyltransferase compare
AO353_14505 -3.7 -12.8 ketol-acid reductoisomerase compare
AO353_07230 -3.7 -17.8 anthranilate synthase compare
AO353_08885 -3.7 -19.6 polyphosphate kinase compare
AO353_02710 -3.7 -13.3 (p)ppGpp synthetase compare
AO353_13160 -3.7 -2.5 membrane protease HflC compare
AO353_05110 -3.6 -12.5 histidinol dehydrogenase compare
AO353_02070 -3.6 -8.7 prephenate dehydratase compare
AO353_14795 -3.6 -6.5 molybdopterin-synthase adenylyltransferase compare
AO353_02075 -3.5 -12.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08185 -3.5 -10.4 methionine biosynthesis protein MetW compare
AO353_17650 -3.5 -6.7 response regulator SirA compare
AO353_20620 -3.5 -8.0 isopropylmalate isomerase compare
AO353_07520 -3.5 -14.4 8-amino-7-oxononanoate synthase compare
AO353_06350 -3.5 -12.2 hydrogenase compare
AO353_09865 -3.4 -12.9 hypothetical protein compare
AO353_11750 -3.4 -2.4 ATPase compare
AO353_22800 -3.4 -3.3 sulfite reductase compare
AO353_03380 -3.4 -8.4 sugar ABC transporter ATP-binding protein compare
AO353_19060 -3.4 -5.1 CysB family transcriptional regulator compare
AO353_20175 -3.3 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_10710 -3.3 -7.1 tryptophan synthase subunit beta compare
AO353_08685 -3.3 -9.5 N-acetylglutamate synthase compare
AO353_14595 -3.3 -10.9 carbonate dehydratase compare
AO353_10035 -3.3 -9.9 LysR family transcriptional regulator compare
AO353_00495 -3.3 -3.5 DNA topoisomerase I compare
AO353_08345 -3.3 -9.5 dihydroxy-acid dehydratase compare
AO353_08045 -3.2 -16.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_03580 -3.2 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_13010 -3.2 -13.9 thiamine biosynthesis protein ThiC compare
AO353_27090 -3.2 -2.8 hypothetical protein compare
AO353_14775 -3.2 -8.9 hypothetical protein compare
AO353_07140 -3.2 -17.7 peptidase M23 compare
AO353_06155 -3.2 -8.3 copper-transporting ATPase compare
AO353_07155 -3.2 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_13220 -3.1 -8.3 hypothetical protein compare
AO353_08470 -3.1 -5.2 RNA pyrophosphohydrolase compare
AO353_09240 -3.1 -3.0 acetylglutamate kinase compare
AO353_03390 -3.1 -14.0 sugar ABC transporter permease compare
AO353_10030 -3.1 -12.2 pyruvate carboxylase subunit A compare
AO353_08475 -3.1 -9.6 phosphoserine phosphatase compare
AO353_15925 -3.1 -13.1 2-isopropylmalate synthase compare
AO353_14500 -3.1 -7.6 acetolactate synthase 3 regulatory subunit compare
AO353_20095 -3.1 -7.3 histidine kinase compare
AO353_04500 -3.0 -3.5 DNA repair protein RecO compare
AO353_10025 -3.0 -15.5 pyruvate carboxylase subunit B compare
AO353_04155 -3.0 -13.3 ornithine carbamoyltransferase compare
AO353_20540 -3.0 -8.4 aromatic amino acid aminotransferase compare
AO353_02720 -3.0 -7.9 cysteine synthase compare
AO353_03385 -3.0 -10.9 sugar ABC transporter permease compare
AO353_12105 -3.0 -8.7 peptidase S41 compare
AO353_14115 -3.0 -7.2 gamma-glutamyl kinase compare
AO353_15260 -3.0 -8.3 stringent starvation protein A compare
AO353_08015 -2.9 -9.8 5,10-methylenetetrahydrofolate reductase compare
AO353_17640 -2.9 -3.4 serine peptidase compare
AO353_11340 -2.9 -2.2 MarR family transcriptional regulator compare
AO353_04105 -2.9 -10.8 argininosuccinate synthase compare
AO353_03775 -2.9 -9.9 pyruvate kinase compare
AO353_15250 -2.9 -3.9 cytochrome B compare
AO353_14495 -2.9 -12.8 acetolactate synthase 3 catalytic subunit compare
AO353_10705 -2.8 -5.1 tryptophan synthase subunit alpha compare
AO353_08510 -2.8 -5.4 3-phosphoglycerate dehydrogenase compare
AO353_03020 -2.8 -9.8 arginine N-succinyltransferase compare
AO353_05240 -2.8 -3.2 rod shape-determining protein MreD compare
AO353_12240 -2.8 -6.8 histidine utilization repressor compare
AO353_16940 -2.8 -6.2 deoxycytidine triphosphate deaminase compare
AO353_02250 -2.8 -4.6 chorismate synthase compare
AO353_01975 -2.8 -10.2 glycosyl transferase compare
AO353_25925 -2.8 -2.4 hypothetical protein compare
AO353_00825 -2.8 -5.9 porin compare
AO353_08560 -2.8 -9.2 spermidine/putrescine ABC transporter permease compare
AO353_05105 -2.8 -9.5 histidinol-phosphate aminotransferase compare
AO353_12365 -2.7 -4.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_20495 -2.7 -2.9 NUDIX hydrolase compare
AO353_09155 -2.7 -7.1 amino acid dehydrogenase compare
AO353_01690 -2.7 -6.5 hypothetical protein compare
AO353_12090 -2.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_14370 -2.7 -8.1 glucose-6-phosphate isomerase compare
AO353_06045 -2.7 -8.6 exodeoxyribonuclease V subunit beta compare
AO353_12360 -2.7 -9.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_03525 -2.6 -9.0 quinolinate synthase A compare
AO353_06040 -2.6 -5.0 exodeoxyribonuclease V subunit alpha compare
AO353_12650 -2.6 -1.4 hypothetical protein compare
AO353_00750 -2.5 -5.1 GntR family transcriptional regulator compare
AO353_04175 -2.5 -6.4 glycerol uptake facilitator GlpF compare
AO353_03585 -2.5 -4.0 ATP-dependent DNA helicase RuvA compare
AO353_06050 -2.5 -8.4 exodeoxyribonuclease V subunit gamma compare
AO353_06455 -2.5 -3.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_20185 -2.5 -6.9 DNA-binding protein compare
AO353_15905 -2.5 -8.7 outer membrane protein assembly factor BamB compare
AO353_00505 -2.4 -5.5 3-ketoacyl-CoA thiolase compare
AO353_03395 -2.4 -7.6 sugar ABC transporter substrate-binding protein compare
AO353_02660 -2.4 -5.4 peptidase P60 compare
AO353_27650 -2.4 -4.9 cell division protein FtsK compare
AO353_18285 -2.4 -3.1 3-phosphoglycerate kinase compare
AO353_18560 -2.4 -2.4 class I peptide chain release factor compare
AO353_05690 -2.4 -4.4 SsrA-binding protein compare
AO353_21450 -2.4 -7.6 cation:proton antiporter compare
AO353_00105 -2.4 -2.6 hypothetical protein compare
AO353_06495 -2.4 -5.6 gamma-glutamyl phosphate reductase compare
AO353_14420 -2.4 -6.0 molecular chaperone DnaK compare
AO353_03590 -2.4 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_05225 -2.4 -14.2 hypothetical protein compare
AO353_23495 -2.3 -2.9 SAM-dependent methyltransferase compare
AO353_12500 -2.3 -2.2 shikimate kinase compare
AO353_20510 -2.3 -2.4 amidase compare
AO353_14400 -2.3 -4.6 Fis family transcriptional regulator compare
AO353_08165 -2.3 -3.8 pyrroline-5-carboxylate reductase compare
AO353_04565 -2.3 -6.9 nucleoid-associated protein compare
AO353_00510 -2.3 -5.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_07220 -2.3 -5.9 anthranilate synthase compare
AO353_20200 -2.3 -5.2 peptidylprolyl isomerase compare
AO353_16280 -2.2 -6.6 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_18325 -2.2 -3.6 hypothetical protein compare
AO353_03715 -2.2 -3.5 H-NS histone compare
AO353_07515 -2.2 -2.3 transporter compare
AO353_02300 -2.2 -3.2 MarR family transcriptional regulator compare
AO353_06365 -2.2 -10.8 hypothetical protein compare
AO353_26070 -2.2 -2.9 hypothetical protein compare
AO353_05625 -2.2 -2.0 transcription elongation factor GreA compare
AO353_21470 -2.2 -11.1 cation:proton antiporter compare
AO353_12145 -2.2 -5.3 nitrogen regulation protein NR(I) compare
AO353_04355 -2.2 -1.9 homoserine dehydrogenase compare
AO353_10040 -2.1 -8.9 transcriptional regulator compare
AO353_05130 -2.1 -1.9 anti-anti-sigma factor compare
AO353_05490 -2.1 -5.7 transcriptional regulator compare
AO353_22655 -2.1 -6.2 hypothetical protein compare
AO353_03515 -2.1 -2.2 cold-shock protein compare
AO353_21460 -2.1 -7.1 cation:proton antiporter compare
AO353_10670 -2.0 -5.8 shikimate dehydrogenase compare
AO353_17940 -2.0 -3.0 hypothetical protein compare
AO353_08565 -2.0 -10.7 spermidine/putrescine ABC transporter permease compare
AO353_01135 -2.0 -1.7 enoyl-CoA hydratase compare
AO353_10455 -2.0 -2.7 tRNA modification GTPase MnmE compare
AO353_07445 -2.0 -1.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_26945 -2.0 -2.0 transcriptional regulator compare
AO353_02085 -1.9 -5.4 methylthioribose-1-phosphate isomerase compare
AO353_07430 -1.9 -9.9 pyrroloquinoline quinone biosynthesis protein PqqF compare
AO353_01990 -1.9 -7.5 UDP-N-acetylglucosamine 2-epimerase compare
AO353_21465 -1.9 -2.8 cation:proton antiporter compare
AO353_00540 -1.9 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_07910 -1.9 -2.0 hypothetical protein compare
AO353_10435 -1.9 -9.2 chromosome partitioning protein compare
AO353_07555 -1.9 -2.5 glycine cleavage system protein R compare
AO353_24425 -1.9 -2.7 amino acid ABC transporter permease compare
AO353_07700 -1.9 -3.6 electron transfer flavoprotein subunit alpha compare
AO353_13155 -1.9 -4.3 hypothetical protein compare
AO353_10375 -1.8 -4.5 XRE family transcriptional regulator compare
AO353_07495 -1.8 -10.8 acyl-CoA dehydrogenase compare
AO353_15290 -1.8 -5.5 methyltransferase compare
AO353_19365 -1.8 -9.0 thiol:disulfide interchange protein compare
AO353_11770 -1.8 -2.4 molecular chaperone Hsp33 compare
AO353_10945 -1.8 -2.8 cytochrome C compare
AO353_09260 -1.8 -6.9 ribonuclease PH compare
AO353_09840 -1.7 -5.3 chorismate--pyruvate lyase compare
AO353_20380 -1.7 -7.2 acyl-CoA dehydrogenase compare
AO353_00810 -1.7 -2.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_12075 -1.7 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_18335 -1.7 -3.7 hypothetical protein compare
AO353_15830 -1.7 -2.9 transcriptional regulator compare
AO353_19145 -1.7 -4.5 protease HtpX compare
AO353_07315 -1.7 -1.8 rRNA methyltransferase compare
AO353_26795 -1.7 -3.5 NAD-dependent deacetylase compare
AO353_03420 -1.7 -3.9 phosphogluconate dehydratase compare
AO353_11165 -1.7 -7.8 hypothetical protein compare
AO353_12935 -1.7 -4.5 glycosyltransferase compare


Specific Phenotypes

For 30 genes in this experiment