Experiment set6IT064 for Pseudomonas fluorescens FW300-N1B4

Compare to:

N2E2wt with N1B4m denitrifying repA

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_3595 -4.4 -3.0 Flagellin protein FlaG compare
Pf1N1B4_5029 -4.4 -3.0 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_5031 -4.1 -4.8 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_3625 -3.7 -2.6 Flagellar synthesis regulator FleN compare
Pf1N1B4_5721 -3.7 -3.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5797 -3.6 -2.4 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_1246 -3.5 -2.4 FIG00954047: hypothetical protein compare
Pf1N1B4_1612 -3.4 -2.3 FIG00955429: hypothetical protein compare
Pf1N1B4_3531 -3.3 -2.3 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_899 -3.3 -3.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_236 -3.3 -4.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_5768 -3.3 -2.3 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_3812 -3.3 -9.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1568 -3.2 -3.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_3993 -3.1 -4.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_3468 -3.0 -2.2 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4802 -2.8 -2.9 polysaccharide deacetylase compare
Pf1N1B4_977 -2.7 -4.5 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_3906 -2.7 -4.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2154 -2.7 -1.9 hypothetical protein compare
Pf1N1B4_952 -2.7 -4.1 Cell division protein MraZ compare
Pf1N1B4_4065 -2.7 -9.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_932 -2.7 -2.1 FIG00963370: hypothetical protein compare
Pf1N1B4_4765 -2.6 -1.8 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_1974 -2.6 -2.9 L-lysine permease compare
Pf1N1B4_627 -2.6 -3.4 hypothetical protein compare
Pf1N1B4_4139 -2.6 -2.5 Transcriptional regulator, MerR family compare
Pf1N1B4_418 -2.5 -8.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_4835 -2.5 -2.6 Carbon starvation protein A compare
Pf1N1B4_1724 -2.5 -5.2 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_5666 -2.5 -3.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5030 -2.5 -4.0 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_4733 -2.4 -3.9 Fap system putative outer membrane protein compare
Pf1N1B4_5014 -2.4 -2.3 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_235 -2.4 -6.0 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_4299 -2.4 -3.8 sensor histidine kinase compare
Pf1N1B4_5870 -2.4 -2.8 VgrG protein compare
Pf1N1B4_1627 -2.4 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_5665 -2.3 -5.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2548 -2.3 -7.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3800 -2.3 -2.1 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_1408 -2.3 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4568 -2.3 -1.3 FIG00793915: hypothetical protein compare
Pf1N1B4_5077 -2.2 -3.5 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_3997 -2.2 -4.2 Uncharacterized protein YtfM precursor compare
Pf1N1B4_5735 -2.2 -9.8 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_4824 -2.2 -2.2 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_3538 -2.2 -1.5 Transcriptional regulator, AraC family compare
Pf1N1B4_578 -2.1 -3.8 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1590 -2.1 -6.4 Histidine utilization repressor compare
Pf1N1B4_767 -2.1 -5.1 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_2880 -2.1 -10.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_348 -2.1 -4.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_5858 -2.1 -4.1 carboxyphosphonoenolpyruvate phosphonomutase, putative compare
Pf1N1B4_1069 -2.1 -5.2 YrbA protein compare
Pf1N1B4_4041 -2.1 -2.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1315 -2.1 -6.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_232 -2.0 -3.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_12 -2.0 -5.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1533 -2.0 -8.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3775 -2.0 -2.4 FIG00956876: hypothetical protein compare
Pf1N1B4_5652 -2.0 -2.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4644 -2.0 -3.6 hypothetical protein compare
Pf1N1B4_4740 -2.0 -2.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_1726 -2.0 -6.5 Sulfate transport system permease protein CysT compare
Pf1N1B4_1725 -2.0 -7.8 Sulfate transport system permease protein CysW compare
Pf1N1B4_1262 -2.0 -6.2 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1234 -2.0 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5740 -1.9 -3.9 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_4777 -1.9 -2.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_1534 -1.9 -13.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2303 -1.9 -10.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1492 -1.9 -1.2 FIG00959437: hypothetical protein compare
Pf1N1B4_2178 -1.9 -1.8 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_4359 -1.9 -4.7 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_1332 -1.9 -2.0 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_890 -1.9 -2.3 DNA recombination and repair protein RecO compare
Pf1N1B4_3843 -1.9 -2.2 Ribosome modulation factor compare
Pf1N1B4_847 -1.9 -7.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_5734 -1.8 -6.1 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_5736 -1.8 -2.3 Nitrate/nitrite transporter compare
Pf1N1B4_5330 -1.8 -0.9 hypothetical protein compare
Pf1N1B4_4305 -1.8 -2.7 PUTATIVE METHYLTRANSFERASE compare
Pf1N1B4_2317 -1.8 -4.2 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf1N1B4_5382 -1.8 -1.7 hypothetical protein compare
Pf1N1B4_3296 -1.7 -2.8 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_5738 -1.7 -4.6 Nitrate/nitrite transporter compare
Pf1N1B4_1626 -1.7 -5.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5365 -1.7 -2.2 hypothetical protein compare
Pf1N1B4_15 -1.7 -3.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1307 -1.7 -2.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5729 -1.7 -4.3 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_350 -1.7 -5.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_284 -1.7 -8.8 Universal stress protein family compare
Pf1N1B4_237 -1.7 -3.0 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_4027 -1.7 -2.1 hypothetical protein compare
Pf1N1B4_3739 -1.7 -3.5 hypothetical protein compare
Pf1N1B4_3081 -1.6 -12.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_5659 -1.6 -7.8 NfuA Fe-S protein maturation compare
Pf1N1B4_4039 -1.6 -2.9 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1128 -1.6 -1.6 hypothetical protein compare
Pf1N1B4_276 -1.6 -2.2 Organic hydroperoxide resistance protein compare
Pf1N1B4_1831 -1.6 -7.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_399 -1.6 -1.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_2526 -1.6 -9.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_5406 -1.6 -3.9 hypothetical protein compare
Pf1N1B4_1906 -1.6 -1.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1566 -1.6 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1624 -1.6 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1971 -1.6 -3.5 SAM-dependent methyltransferases compare
Pf1N1B4_2547 -1.6 -3.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_3552 -1.6 -1.9 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_4176 -1.5 -1.7 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_2039 -1.5 -1.4 hypothetical protein compare
Pf1N1B4_345 -1.5 -2.1 Integration host factor beta subunit compare
Pf1N1B4_3991 -1.5 -1.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_2112 -1.5 -9.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1806 -1.5 -2.6 FIG00953743: hypothetical protein compare
Pf1N1B4_1081 -1.5 -3.9 Ribosome hibernation protein YhbH compare
Pf1N1B4_1374 -1.5 -2.4 HupE-UreJ family metal transporter compare
Pf1N1B4_5224 -1.5 -1.4 tRNA-Arg-CCT compare
Pf1N1B4_825 -1.5 -1.0 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_1785 -1.5 -2.8 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_1463 -1.5 -5.6 hypothetical protein compare
Pf1N1B4_5306 -1.5 -3.0 hypothetical protein compare
Pf1N1B4_2283 -1.5 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4412 -1.5 -3.3 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_5725 -1.4 -1.0 High-affinity iron permease compare
Pf1N1B4_3458 -1.4 -2.6 hypothetical protein compare
Pf1N1B4_3998 -1.4 -4.3 putative exported protein compare
Pf1N1B4_4734 -1.4 -2.7 Fap protein with C39 domain compare
Pf1N1B4_799 -1.4 -1.3 hypothetical protein compare
Pf1N1B4_769 -1.4 -4.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2545 -1.4 -8.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1008 -1.4 -2.0 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_338 -1.4 -2.6 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_3127 -1.4 -2.4 Phage tail/DNA circulation protein compare
Pf1N1B4_1317 -1.4 -2.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_3549 -1.4 -1.8 YciL protein compare
Pf1N1B4_2384 -1.4 -6.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_4337 -1.4 -2.3 Transcriptional regulator compare
Pf1N1B4_1617 -1.4 -3.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3176 -1.4 -3.4 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_5361 -1.4 -2.9 hypothetical protein compare
Pf1N1B4_5508 -1.4 -1.4 hypothetical protein compare
Pf1N1B4_2872 -1.3 -6.4 FIG00955330: hypothetical protein compare
Pf1N1B4_2280 -1.3 -5.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2870 -1.3 -1.3 Regulator of competence-specific genes compare
Pf1N1B4_5113 -1.3 -3.6 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_4815 -1.3 -4.5 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf1N1B4_262 -1.3 -7.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_2706 -1.3 -2.5 FIG00954871: hypothetical protein compare
Pf1N1B4_742 -1.3 -4.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_539 -1.3 -2.2 Transcriptional regulators compare
Pf1N1B4_1632 -1.3 -3.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_1236 -1.3 -3.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2879 -1.3 -3.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4523 -1.3 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_2102 -1.3 -0.8 hypothetical protein compare
Pf1N1B4_102 -1.3 -2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2794 -1.3 -1.9 FIG00953595: hypothetical protein compare
Pf1N1B4_4857 -1.3 -3.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3506 -1.3 -4.4 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_78 -1.3 -1.7 FIG00956937: hypothetical protein compare
Pf1N1B4_5588 -1.3 -1.7 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_652 -1.3 -6.5 Sensory box histidine kinase compare
Pf1N1B4_165 -1.3 -1.6 FIG00638667: hypothetical protein compare
Pf1N1B4_1535 -1.3 -2.9 hypothetical protein compare
Pf1N1B4_2144 -1.3 -5.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_158 -1.3 -2.9 FIG00456158: hypothetical protein compare
Pf1N1B4_208 -1.3 -2.8 Two-component system response regulator QseB compare
Pf1N1B4_4198 -1.3 -1.7 4-hydroxybenzoate transporter compare
Pf1N1B4_4678 -1.2 -2.7 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2176 -1.2 -2.6 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_1830 -1.2 -4.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_4235 -1.2 -2.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf1N1B4_5448 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_2352 -1.2 -1.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_2490 -1.2 -3.3 Biotin synthesis protein BioC compare
Pf1N1B4_3868 -1.2 -3.8 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_5576 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_5851 -1.2 -3.3 Transcriptional regulator, RpiR family compare
Pf1N1B4_2814 -1.2 -3.2 Type IV fimbrial biogenesis protein PilX compare
Pf1N1B4_698 -1.2 -3.0 Rrf2-linked NADH-flavin reductase compare
Pf1N1B4_448 -1.2 -0.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_2621 -1.2 -0.7 PspA/IM30 family protein compare
Pf1N1B4_1660 -1.2 -1.9 FIG00953324: hypothetical protein compare
Pf1N1B4_5927 -1.2 -9.7 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1282 -1.2 -2.3 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5261 -1.2 -1.2 hypothetical protein compare
Pf1N1B4_4533 -1.2 -1.9 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_2936 -1.2 -6.6 Putative sulfate permease compare
Pf1N1B4_4274 -1.2 -3.4 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain compare
Pf1N1B4_2160 -1.2 -3.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf1N1B4_4297 -1.1 -0.9 FIG00966599: hypothetical protein compare
Pf1N1B4_1508 -1.1 -1.1 Lysophospholipid acyltransferase compare
Pf1N1B4_4566 -1.1 -2.2 Universal stress protein family 7 compare
Pf1N1B4_3002 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_4992 -1.1 -3.9 Dienelactone hydrolase and related enzymes compare
Pf1N1B4_1462 -1.1 -6.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in anaerobic experiments

For anaerobic Sodium pyruvate across organisms