Experiment set6IT063 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium bromate 0.05 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3198 -3.1 -2.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5068 -3.0 -12.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2984 -2.8 -3.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5527 -2.7 -2.6 Cold shock protein CspC compare
Pf6N2E2_3303 -2.5 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5316 -2.5 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_37 -2.4 -3.9 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3941 -2.4 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5242 -2.3 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1652 -2.3 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3611 -2.2 -2.0 HflC protein compare
Pf6N2E2_1303 -2.1 -3.6 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_5069 -2.1 -4.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4369 -1.9 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2318 -1.8 -6.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4159 -1.8 -3.6 Cytochrome c4 compare
Pf6N2E2_1083 -1.8 -2.7 hypothetical protein compare
Pf6N2E2_3460 -1.7 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4601 -1.7 -2.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2869 -1.7 -1.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2264 -1.7 -3.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5258 -1.6 -5.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_987 -1.5 -2.4 hypothetical protein compare
Pf6N2E2_1056 -1.5 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5546 -1.5 -4.5 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_5756 -1.4 -2.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2126 -1.4 -4.7 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_4416 -1.4 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_3282 -1.4 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_3226 -1.4 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3942 -1.4 -5.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3782 -1.4 -3.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4071 -1.4 -2.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2320 -1.3 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2413 -1.3 -1.5 FIG074102: hypothetical protein compare
Pf6N2E2_5430 -1.3 -5.3 Transglycosylase, Slt family compare
Pf6N2E2_5257 -1.3 -5.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1215 -1.3 -2.5 probable membrane protein YPO2362 compare
Pf6N2E2_5338 -1.3 -5.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2447 -1.3 -5.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5339 -1.3 -4.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4987 -1.3 -1.2 MaoC-like domain protein compare
Pf6N2E2_434 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_2986 -1.3 -2.8 Transcriptional regulator, LuxR family compare
Pf6N2E2_1712 -1.2 -2.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2313 -1.2 -2.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2519 -1.2 -1.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5761 -1.2 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1932 -1.2 -3.4 Transcriptional regulator, IclR family compare
Pf6N2E2_2646 -1.2 -1.7 FIG00953416: hypothetical protein compare
Pf6N2E2_2310 -1.2 -6.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1749 -1.2 -2.0 Cyn operon transcriptional activator compare
Pf6N2E2_5764 -1.2 -5.3 C4-dicarboxylate transporter/malic acid transport protein compare
Pf6N2E2_704 -1.2 -2.7 Cytochrome c551/c552 compare
Pf6N2E2_5668 -1.2 -3.1 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_5780 -1.2 -5.7 Periplasmic protease compare
Pf6N2E2_3842 -1.1 -3.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4077 -1.1 -1.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3607 -1.1 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5902 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_229 -1.1 -2.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_971 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_1157 -1.1 -1.4 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_2552 -1.1 -3.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4467 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_3505 -1.1 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5545 -1.1 -2.5 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_855 -1.1 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2325 -1.1 -2.8 Recombination protein RecR compare
Pf6N2E2_1611 -1.1 -2.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_1806 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_1723 -1.0 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_40 -1.0 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3603 -1.0 -4.0 FIG003573: hypothetical protein compare
Pf6N2E2_3199 -1.0 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_2973 -1.0 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_178 -1.0 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2188 -1.0 -2.6 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_955 -1.0 -2.7 FIG00953508: hypothetical protein compare
Pf6N2E2_2428 -1.0 -1.8 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_623 -1.0 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_2311 -1.0 -3.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5133 -1.0 -1.9 FIG00953980: hypothetical protein compare
Pf6N2E2_2503 -1.0 -1.3 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5052 -1.0 -1.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_756 -1.0 -3.4 hypothetical protein compare
Pf6N2E2_1246 -1.0 -1.5 FIG00961372: hypothetical protein compare
Pf6N2E2_4153 -1.0 -0.9 Sensory box histidine kinase compare
Pf6N2E2_1024 -1.0 -1.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_1322 -1.0 -2.5 MoaE protein compare
Pf6N2E2_193 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_563 -1.0 -3.9 Serine transporter compare
Pf6N2E2_2013 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_3099 -1.0 -5.2 FIG003003: hypothetical protein compare
Pf6N2E2_3033 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2438 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_2018 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_5523 -0.9 -2.8 Small-conductance mechanosensitive channel compare
Pf6N2E2_1299 -0.9 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_1505 -0.9 -3.0 Transporter, MFS superfamily compare
Pf6N2E2_1691 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_2133 -0.9 -3.7 Putative sulfate permease compare
Pf6N2E2_4543 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_4388 -0.9 -5.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_3659 -0.9 -3.1 Protein fixF compare
Pf6N2E2_331 -0.9 -2.2 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_3727 -0.9 -1.9 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_1095 -0.9 -1.6 Opine oxidase subunit C compare
Pf6N2E2_405 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_5024 -0.9 -2.4 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_5428 -0.9 -2.8 DNA recombination and repair protein RecO compare
Pf6N2E2_1696 -0.9 -1.6 Alkanesulfonates-binding protein compare
Pf6N2E2_2467 -0.9 -1.8 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_5337 -0.9 -2.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_6035 -0.9 -1.8 alpha/beta hydrolase fold compare
Pf6N2E2_2536 -0.9 -0.9 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_3271 -0.9 -1.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1673 -0.9 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1492 -0.9 -2.1 No significant database matches compare
Pf6N2E2_2753 -0.9 -1.4 HtrA protease/chaperone protein compare
Pf6N2E2_1173 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_5987 -0.9 -2.9 OmpA family protein compare
Pf6N2E2_338 -0.9 -0.7 Transcriptional regulator, AraC family compare
Pf6N2E2_5452 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_1683 -0.8 -2.1 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2790 -0.8 -1.7 Helix-turn-helix motif compare
Pf6N2E2_3786 -0.8 -2.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_5748 -0.8 -2.1 Transcriptional activator protein LuxR compare
Pf6N2E2_5669 -0.8 -2.7 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_3157 -0.8 -3.3 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_3747 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_74 -0.8 -2.1 DedD protein compare
Pf6N2E2_1502 -0.8 -1.3 Two-component system regulatory protein compare
Pf6N2E2_2448 -0.8 -2.2 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_649 -0.8 -1.1 General secretion pathway protein L compare
Pf6N2E2_367 -0.8 -1.5 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_689 -0.8 -0.9 FIG00956189: hypothetical protein compare
Pf6N2E2_5747 -0.8 -2.6 Two-component response regulator compare
Pf6N2E2_924 -0.8 -1.5 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_4197 -0.8 -3.8 DNA recombination and repair protein RecF compare
Pf6N2E2_4897 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_2317 -0.8 -1.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3461 -0.8 -1.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3853 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_3062 -0.8 -2.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3264 -0.8 -1.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5319 -0.8 -4.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3839 -0.8 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4298 -0.8 -2.1 Uncharacterized protein ImpB compare
Pf6N2E2_33 -0.8 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2081 -0.8 -1.1 putative exported protein compare
Pf6N2E2_2102 -0.8 -2.6 Glutaminase (EC 3.5.1.2) (from data) compare
Pf6N2E2_2286 -0.8 -1.4 FIG00953287: hypothetical protein compare
Pf6N2E2_295 -0.8 -1.5 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_3140 -0.8 -2.2 FIG00953680: hypothetical protein compare
Pf6N2E2_5988 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2127 -0.8 -1.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1656 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_4417 -0.8 -1.8 Protein of unknown function DUF484 compare
Pf6N2E2_4993 -0.8 -1.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_664 -0.8 -1.3 Acetoin catabolism protein X compare
Pf6N2E2_2080 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_2756 -0.8 -2.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5240 -0.7 -3.0 FIG00953775: hypothetical protein compare
Pf6N2E2_2934 -0.7 -1.2 lipoprotein, putative compare
Pf6N2E2_919 -0.7 -1.0 FIG00954373: hypothetical protein compare
Pf6N2E2_5714 -0.7 -0.8 Flavoprotein WrbA compare
Pf6N2E2_3161 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_4345 -0.7 -2.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_2750 -0.7 -3.3 Putative permease PerM (= YfgO) compare
Pf6N2E2_5261 -0.7 -0.8 FIG00956983: hypothetical protein compare
Pf6N2E2_2316 -0.7 -3.8 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_4113 -0.7 -1.3 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_3252 -0.7 -3.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5342 -0.7 -1.2 21 kDa hemolysin precursor compare
Pf6N2E2_2402 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_3253 -0.7 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_90 -0.7 -2.6 Lipoprotein, putative compare
Pf6N2E2_1305 -0.7 -1.1 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_1758 -0.7 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_2105 -0.7 -3.0 Metal transporter, ZIP family compare
Pf6N2E2_4680 -0.7 -1.8 HTH-type transcriptional regulator BetI compare
Pf6N2E2_770 -0.7 -2.6 Ribosylnicotinamide kinase (EC 2.7.1.22) compare
Pf6N2E2_3349 -0.7 -1.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5993 -0.7 -1.0 FIG00957412: hypothetical protein compare
Pf6N2E2_2200 -0.7 -0.4 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_1848 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_2716 -0.7 -1.9 FIG00954793: hypothetical protein compare
Pf6N2E2_3844 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_3480 -0.7 -1.0 Transcriptional regulator, ArsR family compare
Pf6N2E2_5030 -0.7 -2.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_42 -0.7 -2.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2473 -0.7 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_2340 -0.7 -2.2 Transcriptional regulator, GntR family compare
Pf6N2E2_4546 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_5622 -0.7 -1.2 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_68 -0.7 -2.0 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_127 -0.7 -0.9 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1006 -0.7 -1.7 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_1159 -0.7 -3.2 Sialic acid transporter (permease) NanT compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium bromate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium bromate across organisms