Experiment set6IT063 for Pseudomonas fluorescens FW300-N2C3

outer cut, LB soft agar motility assay

Group: motility
Media: LB + Agar (3 g/L)
Culturing: pseudo5_N2-C3_1_ML2, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 12/17/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 22 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2C3

For motility Agar across organisms

SEED Subsystems

Subsystem	#Specific
Flagellar motility	3
Flagellum	3
Bacterial Chemotaxis	2
Bacterial Cytoskeleton	1
Conserved gene cluster associated with Met-tRNA formyltransferase	1
Plasmid replication	1
Protein chaperones	1
Proteolysis in bacteria, ATP-dependent	1
Siderophore Pyoverdine	1
Two-component regulatory systems in Campylobacter	1
Two cell division clusters relating to chromosome partitioning	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ubiquinone and menaquinone biosynthesis
• Histidine metabolism
• Tyrosine metabolism
• Tryptophan metabolism
• Benzoxazinone biosynthesis
• Naphthalene and anthracene degradation
• Porphyrin and chlorophyll metabolism
• Carotenoid biosynthesis - General
• Phenylpropanoid biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Biosynthesis of alkaloids derived from shikimate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
pyoverdine I biosynthesis	11	7	1