Experiment set6IT063 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Minimal media pH9

200 most important genes:

  gene name fitness t score description  
AO353_15490 -5.8 -2.8 hypothetical protein compare
AO353_00495 -4.9 -3.3 DNA topoisomerase I compare
AO353_20695 -4.7 -7.2 O-succinylhomoserine sulfhydrylase compare
AO353_14795 -4.7 -4.6 molybdopterin-synthase adenylyltransferase compare
AO353_06460 -4.6 -5.5 hypothetical protein compare
AO353_08185 -4.5 -7.5 methionine biosynthesis protein MetW compare
AO353_13070 -4.4 -6.7 phosphoserine phosphatase compare
AO353_12085 -4.3 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02070 -4.3 -7.6 prephenate dehydratase compare
AO353_05520 -4.2 -6.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_02640 -4.2 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_08215 -4.2 -4.1 thiazole synthase compare
AO353_20665 -4.2 -12.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14990 -4.2 -2.5 hypothetical protein compare
AO353_12240 -4.1 -5.7 histidine utilization repressor compare
AO353_12090 -4.1 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_03590 -4.1 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_07230 -4.1 -16.9 anthranilate synthase compare
AO353_05115 -4.1 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_06350 -4.1 -11.4 hydrogenase compare
AO353_07525 -4.0 -15.0 biotin synthase compare
AO353_07210 -4.0 -6.1 indole-3-glycerol-phosphate synthase compare
AO353_20540 -4.0 -8.9 aromatic amino acid aminotransferase compare
AO353_12520 -4.0 -12.2 glutamate synthase compare
AO353_03415 -4.0 -6.6 glucokinase compare
AO353_10710 -4.0 -5.4 tryptophan synthase subunit beta compare
AO353_04355 -4.0 -2.7 homoserine dehydrogenase compare
AO353_00310 -4.0 -10.8 transaldolase compare
AO353_20635 -3.9 -14.6 3-isopropylmalate dehydrogenase compare
AO353_05240 -3.9 -3.9 rod shape-determining protein MreD compare
AO353_14505 -3.9 -12.9 ketol-acid reductoisomerase compare
AO353_14400 -3.9 -2.7 Fis family transcriptional regulator compare
AO353_02720 -3.9 -7.8 cysteine synthase compare
AO353_06155 -3.8 -9.2 copper-transporting ATPase compare
AO353_02710 -3.8 -16.7 (p)ppGpp synthetase compare
AO353_17650 -3.8 -7.2 response regulator SirA compare
AO353_03360 -3.8 -10.0 glucose-6-phosphate dehydrogenase compare
AO353_13160 -3.8 -2.6 membrane protease HflC compare
AO353_05110 -3.8 -13.9 histidinol dehydrogenase compare
AO353_12070 -3.8 -10.0 imidazoleglycerol-phosphate dehydratase compare
AO353_08045 -3.8 -17.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_08345 -3.7 -8.3 dihydroxy-acid dehydratase compare
AO353_20175 -3.7 -3.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_08685 -3.7 -9.3 N-acetylglutamate synthase compare
AO353_07140 -3.7 -23.2 peptidase M23 compare
AO353_07505 -3.7 -11.4 dethiobiotin synthetase compare
AO353_03410 -3.7 -3.3 chemotaxis protein CheY compare
AO353_13165 -3.7 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_22800 -3.6 -3.5 sulfite reductase compare
AO353_13010 -3.6 -14.2 thiamine biosynthesis protein ThiC compare
AO353_06390 -3.6 -7.3 magnesium transporter compare
AO353_08475 -3.6 -10.4 phosphoserine phosphatase compare
AO353_12515 -3.6 -23.0 glutamate synthase compare
AO353_09050 -3.6 -4.9 recombinase XerC compare
AO353_08180 -3.6 -14.7 homoserine O-acetyltransferase compare
AO353_10025 -3.6 -16.2 pyruvate carboxylase subunit B compare
AO353_02075 -3.5 -13.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00825 -3.5 -7.8 porin compare
AO353_11750 -3.5 -2.4 ATPase compare
AO353_04105 -3.5 -10.3 argininosuccinate synthase compare
AO353_03380 -3.5 -8.1 sugar ABC transporter ATP-binding protein compare
AO353_21455 -3.5 -2.3 cation:proton antiporter compare
AO353_08885 -3.5 -18.5 polyphosphate kinase compare
AO353_07510 -3.5 -11.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_20625 -3.4 -6.1 3-isopropylmalate dehydratase compare
AO353_10035 -3.4 -11.5 LysR family transcriptional regulator compare
AO353_03580 -3.4 -3.3 ATP-dependent DNA helicase RuvB compare
AO353_14500 -3.4 -7.1 acetolactate synthase 3 regulatory subunit compare
AO353_03525 -3.3 -10.6 quinolinate synthase A compare
AO353_14370 -3.3 -8.3 glucose-6-phosphate isomerase compare
AO353_12105 -3.3 -9.0 peptidase S41 compare
AO353_04155 -3.3 -13.5 ornithine carbamoyltransferase compare
AO353_20620 -3.3 -7.2 isopropylmalate isomerase compare
AO353_15925 -3.3 -14.0 2-isopropylmalate synthase compare
AO353_07520 -3.3 -13.8 8-amino-7-oxononanoate synthase compare
AO353_09865 -3.2 -12.4 hypothetical protein compare
AO353_03390 -3.2 -14.8 sugar ABC transporter permease compare
AO353_12360 -3.2 -10.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14115 -3.2 -7.1 gamma-glutamyl kinase compare
AO353_20095 -3.2 -7.3 histidine kinase compare
AO353_09240 -3.2 -3.1 acetylglutamate kinase compare
AO353_12365 -3.2 -4.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_05690 -3.2 -5.2 SsrA-binding protein compare
AO353_14495 -3.2 -14.1 acetolactate synthase 3 catalytic subunit compare
AO353_14595 -3.1 -9.7 carbonate dehydratase compare
AO353_07515 -3.1 -2.4 transporter compare
AO353_02300 -3.1 -3.1 MarR family transcriptional regulator compare
AO353_08465 -3.1 -15.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_12765 -3.1 -4.6 transcriptional regulator compare
AO353_20565 -3.0 -2.0 tRNA-Ala compare
AO353_09840 -3.0 -6.9 chorismate--pyruvate lyase compare
AO353_00510 -3.0 -6.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_13100 -2.9 -2.8 GTPase RsgA compare
AO353_08170 -2.9 -6.1 hypothetical protein compare
AO353_07155 -2.9 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_05105 -2.9 -11.1 histidinol-phosphate aminotransferase compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_09155 -2.9 -8.5 amino acid dehydrogenase compare
AO353_00750 -2.9 -5.7 GntR family transcriptional regulator compare
AO353_08560 -2.8 -8.3 spermidine/putrescine ABC transporter permease compare
AO353_14220 -2.8 -2.0 ribosomal large subunit pseudouridine synthase D compare
AO353_03420 -2.8 -6.3 phosphogluconate dehydratase compare
AO353_08015 -2.7 -9.6 5,10-methylenetetrahydrofolate reductase compare
AO353_14420 -2.7 -7.1 molecular chaperone DnaK compare
AO353_00505 -2.7 -6.2 3-ketoacyl-CoA thiolase compare
AO353_06040 -2.7 -5.1 exodeoxyribonuclease V subunit alpha compare
AO353_06455 -2.7 -3.2 D-alanyl-D-alanine carboxypeptidase compare
AO353_01595 -2.7 -3.5 Flp pilus assembly protein CpaB compare
AO353_03020 -2.7 -8.2 arginine N-succinyltransferase compare
AO353_06495 -2.7 -7.0 gamma-glutamyl phosphate reductase compare
AO353_10030 -2.7 -11.4 pyruvate carboxylase subunit A compare
AO353_03615 -2.7 -5.0 cold-shock protein compare
AO353_14775 -2.7 -6.9 hypothetical protein compare
AO353_23495 -2.7 -3.3 SAM-dependent methyltransferase compare
AO353_06355 -2.6 -3.7 thiamine-phosphate pyrophosphorylase compare
AO353_01975 -2.6 -9.4 glycosyl transferase compare
AO353_21460 -2.6 -9.5 cation:proton antiporter compare
AO353_03395 -2.6 -10.1 sugar ABC transporter substrate-binding protein compare
AO353_01690 -2.6 -6.3 hypothetical protein compare
AO353_07215 -2.6 -7.4 anthranilate phosphoribosyltransferase compare
AO353_04565 -2.6 -7.5 nucleoid-associated protein compare
AO353_08510 -2.6 -6.3 3-phosphoglycerate dehydrogenase compare
AO353_17520 -2.5 -3.7 hypothetical protein compare
AO353_19060 -2.5 -5.9 CysB family transcriptional regulator compare
AO353_01970 -2.5 -11.5 hypothetical protein compare
AO353_15260 -2.5 -5.2 stringent starvation protein A compare
AO353_09000 -2.5 -6.1 argininosuccinate lyase compare
AO353_20200 -2.5 -4.3 peptidylprolyl isomerase compare
AO353_09560 -2.4 -1.7 type VI secretion protein compare
AO353_02250 -2.4 -5.0 chorismate synthase compare
AO353_27995 -2.4 -5.6 RpiR family transcriptional regulator compare
AO353_00835 -2.4 -7.6 transporter compare
AO353_08780 -2.4 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_17640 -2.4 -2.8 serine peptidase compare
AO353_08565 -2.4 -11.6 spermidine/putrescine ABC transporter permease compare
AO353_27650 -2.4 -4.4 cell division protein FtsK compare
AO353_13220 -2.4 -6.7 hypothetical protein compare
AO353_15250 -2.4 -4.3 cytochrome B compare
AO353_02020 -2.3 -5.1 hypothetical protein compare
AO353_06045 -2.3 -9.1 exodeoxyribonuclease V subunit beta compare
AO353_04175 -2.3 -5.5 glycerol uptake facilitator GlpF compare
AO353_10670 -2.3 -6.9 shikimate dehydrogenase compare
AO353_09260 -2.3 -8.3 ribonuclease PH compare
AO353_15975 -2.2 -4.5 GntR family transcriptional regulator compare
AO353_05225 -2.2 -13.8 hypothetical protein compare
AO353_09320 -2.2 -9.7 ATP-dependent DNA helicase RecG compare
AO353_02660 -2.2 -4.2 peptidase P60 compare
AO353_12115 -2.2 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14740 -2.2 -5.2 GTP-binding protein compare
AO353_03385 -2.2 -7.7 sugar ABC transporter permease compare
AO353_21445 -2.1 -1.9 cation:proton antiporter compare
AO353_21450 -2.1 -5.8 cation:proton antiporter compare
AO353_16940 -2.1 -5.8 deoxycytidine triphosphate deaminase compare
AO353_03775 -2.1 -8.4 pyruvate kinase compare
AO353_06050 -2.1 -7.5 exodeoxyribonuclease V subunit gamma compare
AO353_07220 -2.1 -5.4 anthranilate synthase compare
AO353_15905 -2.1 -6.4 outer membrane protein assembly factor BamB compare
AO353_17675 -2.1 -4.5 hypothetical protein compare
AO353_20170 -2.0 -5.4 trigger factor compare
AO353_11255 -2.0 -3.1 RND transporter compare
AO353_13640 -2.0 -5.6 histidine kinase compare
AO353_10705 -2.0 -4.0 tryptophan synthase subunit alpha compare
AO353_09745 -2.0 -1.6 hypothetical protein compare
AO353_14915 -2.0 -3.1 (2Fe-2S)-binding protein compare
AO353_03585 -1.9 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_21470 -1.9 -10.3 cation:proton antiporter compare
AO353_10040 -1.9 -7.5 transcriptional regulator compare
AO353_20185 -1.9 -5.9 DNA-binding protein compare
AO353_05490 -1.9 -3.7 transcriptional regulator compare
AO353_08470 -1.9 -2.5 RNA pyrophosphohydrolase compare
AO353_18780 -1.8 -5.9 cobyrinic acid a,c-diamide synthase compare
AO353_08600 -1.8 -3.7 TetR family transcriptional regulator compare
AO353_16265 -1.8 -4.8 Fis family transcriptional regulator compare
AO353_16285 -1.8 -6.3 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) compare
AO353_01990 -1.8 -5.5 UDP-N-acetylglucosamine 2-epimerase compare
AO353_26840 -1.8 -2.6 RND transporter compare
AO353_07250 -1.8 -1.9 polyamine ABC transporter permease compare
AO353_07495 -1.8 -11.2 acyl-CoA dehydrogenase compare
AO353_18135 -1.8 -1.5 hypothetical protein compare
AO353_19365 -1.8 -9.4 thiol:disulfide interchange protein compare
AO353_08115 -1.8 -4.8 energy transducer TonB compare
AO353_04180 -1.8 -7.4 glycerol kinase compare
AO353_13030 -1.8 -5.6 cytoplasmic protein compare
AO353_16290 -1.8 -7.3 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) compare
AO353_01985 -1.8 -7.1 hypothetical protein compare
AO353_12145 -1.7 -4.0 nitrogen regulation protein NR(I) compare
AO353_02010 -1.7 -4.0 glycosyl transferase family 1 compare
AO353_16040 -1.7 -2.5 hypothetical protein compare
AO353_27860 -1.7 -4.9 hypothetical protein compare
AO353_14415 -1.7 -5.2 glutamyl-Q tRNA(Asp) ligase compare
AO353_20380 -1.7 -7.0 acyl-CoA dehydrogenase compare
AO353_21255 -1.7 -3.3 ABC transporter ATP-binding protein compare
AO353_03500 -1.7 -7.1 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
AO353_14945 -1.7 -1.9 hypothetical protein compare
AO353_13140 -1.7 -5.6 tRNA dimethylallyltransferase compare
AO353_24275 -1.7 -2.3 transcriptional regulator compare
AO353_08505 -1.7 -8.3 FAD-linked oxidase compare
AO353_18450 -1.7 -3.8 hypothetical protein compare
AO353_22765 -1.7 -3.3 addiction module antitoxin compare
AO353_13155 -1.7 -3.2 hypothetical protein compare


Specific Phenotypes

For 35 genes in this experiment