Experiment set6IT063 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Minimal media pH9

200 most detrimental genes:

  gene name fitness t score description  
AO353_12460 +3.8 21.6 malate dehydrogenase compare
AO353_09945 +3.5 14.9 LysR family transcriptional regulator compare
AO353_10990 +2.8 17.8 glutamate:protein symporter compare
AO353_07645 +2.6 2.8 sarcosine oxidase subunit gamma compare
AO353_00430 +2.5 7.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_21625 +1.9 6.1 Fe/S biogenesis protein NfuA compare
AO353_14855 +1.9 12.9 uracil phosphoribosyltransferase compare
AO353_07190 +1.7 12.6 S-adenosylmethionine decarboxylase proenzyme compare
AO353_12690 +1.7 2.3 acyl carrier protein compare
AO353_08895 +1.6 6.1 hypothetical protein compare
AO353_13925 +1.6 4.6 XRE family transcriptional regulator compare
AO353_09890 +1.6 8.4 phosphate ABC transporter ATP-binding protein compare
AO353_12420 +1.6 6.2 predicted FeS cluster maintenance protein (from data) compare
AO353_06320 +1.5 7.0 AsnC family transcriptional regulator compare
AO353_13585 +1.5 4.1 predicted copper homeostasis protein (from data) compare
AO353_06100 +1.5 2.1 thymidylate synthase compare
AO353_20840 +1.5 2.9 ribose pyranase compare
AO353_03710 +1.5 3.7 formyltetrahydrofolate deformylase compare
AO353_13570 +1.5 10.1 TonB-dependent receptor compare
AO353_11920 +1.5 3.1 hypothetical protein compare
AO353_07325 +1.5 1.8 diadenosine tetraphosphatase compare
AO353_05125 +1.4 5.2 BolA family transcriptional regulator compare
AO353_16745 +1.4 3.3 ArsR family transcriptional regulator compare
AO353_12580 +1.4 1.5 type II secretory protein PulK compare
AO353_02005 +1.4 1.8 hypothetical protein compare
AO353_15460 +1.3 6.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_06540 +1.3 2.8 hypothetical protein compare
AO353_03035 +1.3 4.5 AraC family transcriptional regulator compare
AO353_01810 +1.3 7.4 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_15455 +1.3 9.4 cytochrome o ubiquinol oxidase subunit I compare
AO353_23720 +1.2 4.0 BatB protein compare
AO353_05880 +1.2 2.8 plasmid stabilization protein compare
AO353_22360 +1.2 2.1 ABC transporter ATP-binding protein compare
AO353_03670 +1.2 5.8 ornithine acetyltransferase compare
AO353_09905 +1.2 6.7 phosphate-binding protein compare
AO353_19755 +1.2 3.0 cytosine deaminase compare
AO353_15465 +1.2 5.3 cytochrome C oxidase compare
AO353_15185 +1.2 4.7 ATPase compare
AO353_14590 +1.2 1.2 serine kinase/phosphatase compare
AO353_03050 +1.2 5.4 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_10730 +1.1 1.9 hypothetical protein compare
AO353_13095 +1.1 3.8 flagellar motor protein MotB compare
AO353_06490 +1.1 3.6 nicotinate-nucleotide adenylyltransferase compare
AO353_24740 +1.1 1.6 hypothetical protein compare
AO353_09860 +1.1 7.0 histidine kinase compare
AO353_26525 +1.1 1.7 hypothetical protein compare
AO353_16530 +1.1 1.0 ribonuclease HII compare
AO353_18840 +1.1 3.1 flagellar biosynthesis protein FlhB compare
AO353_13575 +1.1 2.2 hypothetical protein compare
AO353_15470 +1.1 7.8 protoheme IX farnesyltransferase compare
AO353_15450 +1.1 6.9 ubiquinol oxidase subunit II compare
AO353_20510 +1.1 1.6 amidase compare
AO353_10725 +1.0 1.5 dodecin flavoprotein compare
AO353_25925 +1.0 1.7 hypothetical protein compare
AO353_03055 +1.0 6.1 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_06745 +1.0 1.4 zinc-binding protein compare
AO353_26935 +1.0 1.2 LysR family transcriptional regulator compare
AO353_09900 +1.0 6.5 phosphate ABC transporter permease compare
AO353_08590 +1.0 5.7 glutamine synthetase compare
AO353_27130 +1.0 2.2 hypothetical protein compare
AO353_03045 +1.0 6.6 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) compare
AO353_09025 +1.0 3.7 nucleoside diphosphate kinase regulator compare
AO353_11830 +1.0 4.7 formate dehydrogenase family accessory protein FdhD compare
AO353_18630 +1.0 5.5 beta-ketoacyl-ACP synthase compare
AO353_21595 +1.0 4.9 serine/threonine protein kinase compare
AO353_03230 +1.0 3.2 lysine transporter LysE compare
AO353_23620 +1.0 2.4 hypothetical protein compare
AO353_03605 +1.0 1.1 FmdB family transcriptional regulator compare
AO353_03795 +1.0 3.5 fumarate hydratase compare
AO353_03040 +0.9 5.8 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
AO353_00115 +0.9 2.3 hypothetical protein compare
AO353_02090 +0.9 5.9 N-ethylammeline chlorohydrolase compare
AO353_24745 +0.9 1.5 hypothetical protein compare
AO353_02195 +0.9 2.6 spermidine synthase compare
AO353_07895 +0.9 2.5 fructose-bisphosphate aldolase compare
AO353_16615 +0.9 6.3 RNA polymerase sigma factor RpoS compare
AO353_27420 +0.9 2.4 DNA-binding protein compare
AO353_02000 +0.9 3.1 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_12880 +0.9 2.0 ADP-heptose--LPS heptosyltransferase compare
AO353_28945 +0.9 1.3 potassium-transporting ATPase subunit B compare
AO353_08760 +0.9 6.3 Xaa-Pro aminopeptidase compare
AO353_13670 +0.9 2.8 ribosomal protein L11 methyltransferase compare
AO353_07195 +0.9 2.9 peroxiredoxin compare
AO353_06775 +0.9 4.4 dTDP-4-dehydrorhamnose reductase compare
AO353_08765 +0.9 2.5 hypothetical protein compare
AO353_08575 +0.8 3.9 ABC transporter substrate-binding protein compare
AO353_13720 +0.8 6.0 arginine decarboxylase compare
AO353_01310 +0.8 3.5 radical SAM protein compare
AO353_09660 +0.8 1.5 hypothetical protein compare
AO353_07465 +0.8 1.9 addiction module toxin RelE compare
AO353_10135 +0.8 2.5 zinc ABC transporter permease compare
AO353_21905 +0.8 2.2 hypothetical protein compare
AO353_15115 +0.8 2.8 amidase compare
AO353_08585 +0.8 4.7 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
AO353_07445 +0.8 1.4 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_07875 +0.8 2.2 hypothetical protein compare
AO353_00610 +0.8 1.6 cytochrome C oxidase Cbb3 compare
AO353_13025 +0.8 3.8 ADP-ribose pyrophosphatase compare
AO353_09030 +0.8 0.8 iron donor protein CyaY compare
AO353_04490 +0.8 4.7 murein transglycosylase compare
AO353_07560 +0.8 4.8 malate synthase G compare
AO353_07235 +0.8 4.1 phosphoglycolate phosphatase compare
AO353_08075 +0.8 4.1 hemolysin III compare
AO353_11610 +0.8 1.6 glutamine ABC transporter ATP-binding protein compare
AO353_19250 +0.8 0.8 molybdenum cofactor guanylyltransferase compare
AO353_19280 +0.8 1.2 hypothetical protein compare
AO353_25480 +0.8 2.9 multidrug transporter compare
AO353_18890 +0.8 2.7 cytochrome C compare
AO353_02460 +0.8 2.9 hypothetical protein compare
AO353_02450 +0.8 2.4 hypothetical protein compare
AO353_13865 +0.8 1.6 hypothetical protein compare
AO353_21580 +0.8 2.2 type VI secretion protein compare
AO353_00140 +0.8 1.5 phage tail protein compare
AO353_12015 +0.8 1.4 antitoxin compare
AO353_20045 +0.8 2.9 molecular chaperone Hsp20 compare
AO353_11470 +0.8 2.5 hypothetical protein compare
AO353_00150 +0.7 2.4 hypothetical protein compare
AO353_03175 +0.7 2.5 hypothetical protein compare
AO353_03275 +0.7 1.2 LysR family transcriptional regulator compare
AO353_21770 +0.7 1.6 3-hydroxybutyrate dehydrogenase compare
AO353_25320 +0.7 2.1 phosphoribosyl-dephospho-CoA transferase compare
AO353_01415 +0.7 2.5 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
AO353_14850 +0.7 4.6 uracil transporter compare
AO353_19085 +0.7 1.6 organic hydroperoxide resistance protein compare
AO353_23140 +0.7 1.6 aspartate dehydrogenase compare
AO353_18120 +0.7 1.3 hypothetical protein compare
AO353_27035 +0.7 3.4 molybdenum ABC transporter permease compare
AO353_08365 +0.7 3.4 L-cystine transporter tcyP compare
AO353_22200 +0.7 1.4 metal-binding protein compare
AO353_20270 +0.7 1.7 spore coat protein compare
AO353_00670 +0.7 2.1 acyl-CoA dehydrogenase compare
AO353_06710 +0.7 0.8 riboflavin synthase subunit alpha compare
AO353_12455 +0.7 1.6 nuclease compare
AO353_09460 +0.7 1.7 hypothetical protein compare
AO353_11775 +0.7 3.2 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_26870 +0.7 1.6 AP endonuclease compare
AO353_17635 +0.7 4.0 RNA polymerase subunit sigma compare
AO353_21895 +0.7 2.1 molybdenum cofactor biosynthesis protein MoaD compare
AO353_09135 +0.7 1.3 cytochrome C compare
AO353_25315 +0.7 2.1 malonate decarboxylase subunit epsilon compare
AO353_08635 +0.7 2.9 hypothetical protein compare
AO353_09705 +0.7 1.3 hypothetical protein compare
AO353_02280 +0.7 0.9 DNA mismatch repair protein MutS compare
AO353_10455 +0.7 1.2 tRNA modification GTPase MnmE compare
AO353_09485 +0.7 2.2 hypothetical protein compare
AO353_28960 +0.7 2.0 Fis family transcriptional regulator compare
AO353_25885 +0.7 2.3 sugar ABC transporter permease compare
AO353_24205 +0.7 3.0 hypothetical protein compare
AO353_28965 +0.7 2.5 hypothetical protein compare
AO353_25335 +0.7 1.3 malonate decarboxylase acyl carrier protein compare
AO353_12915 +0.7 3.1 carbamoyltransferase compare
AO353_15500 +0.7 3.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_02480 +0.7 3.9 peptidylprolyl isomerase compare
AO353_27975 +0.7 2.2 ABC transporter compare
AO353_18095 +0.7 1.7 hypothetical protein compare
AO353_12895 +0.7 2.4 lipopolysaccharide kinase compare
AO353_00260 +0.7 1.3 hypothetical protein compare
AO353_04810 +0.6 0.6 hypothetical protein compare
AO353_17380 +0.6 2.2 hypothetical protein compare
AO353_27030 +0.6 3.0 molybdate ABC transporter substrate-binding protein compare
AO353_11825 +0.6 4.4 CbbBc protein compare
AO353_03365 +0.6 3.3 transcriptional regulator compare
AO353_13580 +0.6 1.9 copper resistance protein CopZ compare
AO353_03135 +0.6 1.3 hypothetical protein compare
AO353_12710 +0.6 0.8 thioredoxin compare
AO353_07770 +0.6 2.5 AraC family transcriptional regulator compare
AO353_04660 +0.6 2.7 molybdenum cofactor biosynthesis protein MoaC compare
AO353_12930 +0.6 1.5 GlcNAc-PI de-N-acetylase compare
AO353_20555 +0.6 3.3 transporter compare
AO353_13360 +0.6 2.2 ABC transporter ATP-binding protein compare
AO353_17180 +0.6 1.9 hypothetical protein compare
AO353_22115 +0.6 2.3 peptidylprolyl isomerase compare
AO353_11450 +0.6 2.1 hypothetical protein compare
AO353_13355 +0.6 2.1 ABC transporter ATP-binding protein compare
AO353_24830 +0.6 1.3 enoyl-CoA hydratase compare
AO353_05905 +0.6 2.6 LysR family transcriptional regulator compare
AO353_02045 +0.6 3.0 hypothetical protein compare
AO353_13200 +0.6 4.1 exoribonuclease R compare
AO353_24405 +0.6 1.1 ArsR family transcriptional regulator compare
AO353_23985 +0.6 2.0 isochorismate-pyruvate lyase compare
AO353_26945 +0.6 1.0 transcriptional regulator compare
AO353_19720 +0.6 2.0 hemolysin D compare
AO353_09835 +0.6 1.3 rubredoxin compare
AO353_23515 +0.6 1.3 muconate cycloisomerase compare
AO353_01950 +0.6 3.9 ion transporter compare
AO353_21110 +0.6 1.4 hypothetical protein compare
AO353_01315 +0.6 2.4 TetR family transcriptional regulator compare
AO353_13840 +0.6 2.0 histidine kinase compare
AO353_09735 +0.6 2.1 hypothetical protein compare
AO353_00125 +0.6 1.2 hypothetical protein compare
AO353_29295 +0.6 2.4 aldehyde dehydrogenase compare
AO353_12935 +0.6 1.5 glycosyltransferase compare
AO353_08810 +0.6 3.1 NADPH:quinone oxidoreductase compare
AO353_02160 +0.6 2.3 polyphosphate kinase compare
AO353_18335 +0.6 1.8 hypothetical protein compare
AO353_15175 +0.6 2.6 alpha/beta hydrolase compare
AO353_18555 +0.6 4.1 aromatic amino acid transporter compare
AO353_06335 +0.6 4.6 AMP nucleosidase compare
AO353_26105 +0.6 1.7 structural protein P5 compare
AO353_12270 +0.6 1.8 histidine ammonia-lyase compare


Specific Phenotypes

For 35 genes in this experiment