Experiment set6IT062 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium arsenate dibasic heptahydrate 0.0005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_596 -3.0 -6.6 Arsenic efflux pump protein compare
Pf6N2E2_4369 -2.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4077 -2.8 -2.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3908 -2.6 -6.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5160 -2.6 -2.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5178 -2.5 -2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_309 -2.2 -2.5 FIG00957702: hypothetical protein compare
Pf6N2E2_2869 -2.2 -2.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2438 -2.2 -2.4 hypothetical protein compare
Pf6N2E2_2219 -2.2 -2.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4153 -2.2 -1.4 Sensory box histidine kinase compare
Pf6N2E2_1475 -2.1 -6.9 Arsenic resistance protein ArsH compare
Pf6N2E2_3134 -2.1 -1.5 hypothetical protein compare
Pf6N2E2_62 -2.1 -4.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3661 -1.9 -4.0 hypothetical protein compare
Pf6N2E2_4059 -1.9 -1.7 DNA-binding protein HU-alpha compare
Pf6N2E2_3658 -1.9 -5.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4612 -1.9 -2.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_6047 -1.7 -1.8 hypothetical protein compare
Pf6N2E2_2794 -1.7 -1.7 putative membrane protein compare
Pf6N2E2_5068 -1.7 -8.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5536 -1.6 -1.5 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3303 -1.6 -3.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3611 -1.5 -1.5 HflC protein compare
Pf6N2E2_5555 -1.5 -1.7 Cold shock protein CspA compare
Pf6N2E2_1476 -1.5 -3.0 (AF179595) Vco33 compare
Pf6N2E2_855 -1.5 -2.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5069 -1.5 -3.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3461 -1.5 -1.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_395 -1.5 -3.6 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_156 -1.4 -2.2 Carbon storage regulator compare
Pf6N2E2_1336 -1.4 -3.4 AraC family transcription regulator compare
Pf6N2E2_3351 -1.4 -3.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3634 -1.4 -1.9 Transporter compare
Pf6N2E2_2487 -1.4 -1.1 FIG00956090: hypothetical protein compare
Pf6N2E2_595 -1.3 -1.9 Arsenical resistance operon repressor compare
Pf6N2E2_4499 -1.3 -2.2 protein of unknown function DUF86 compare
Pf6N2E2_61 -1.3 -6.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_70 -1.3 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5927 -1.3 -3.6 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_3659 -1.2 -3.1 Protein fixF compare
Pf6N2E2_5993 -1.2 -2.5 FIG00957412: hypothetical protein compare
Pf6N2E2_1009 -1.2 -2.0 Inositol transport system permease protein compare
Pf6N2E2_2674 -1.2 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_1477 -1.2 -4.0 hypothetical protein compare
Pf6N2E2_1095 -1.1 -2.1 Opine oxidase subunit C compare
Pf6N2E2_3941 -1.1 -2.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5523 -1.1 -3.3 Small-conductance mechanosensitive channel compare
Pf6N2E2_3397 -1.1 -1.8 Phage protein compare
Pf6N2E2_423 -1.1 -1.8 Putative phosphatase YfbT compare
Pf6N2E2_3271 -1.1 -2.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_446 -1.1 -5.0 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_2675 -1.1 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5243 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_5425 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_3252 -1.0 -4.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5316 -1.0 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_504 -1.0 -2.5 DNA-binding response regulator compare
Pf6N2E2_2633 -1.0 -2.4 Nitroreductase family protein compare
Pf6N2E2_693 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_3505 -1.0 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_869 -1.0 -2.9 FMN oxidoreductase compare
Pf6N2E2_2320 -1.0 -2.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_927 -1.0 -2.5 (AJ250023) putative polyketide synthase compare
Pf6N2E2_5820 -0.9 -2.2 FIG00957914: hypothetical protein compare
Pf6N2E2_3607 -0.9 -3.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2127 -0.9 -2.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4661 -0.9 -2.2 KluA regulatory protein compare
Pf6N2E2_5261 -0.9 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_5573 -0.9 -2.7 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_2636 -0.9 -2.2 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1433 -0.9 -2.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_170 -0.9 -1.7 lipoprotein, putative compare
Pf6N2E2_2012 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_3460 -0.9 -1.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5242 -0.9 -1.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4624 -0.9 -0.7 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_1512 -0.9 -1.9 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_5452 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_3942 -0.9 -5.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_971 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3782 -0.9 -2.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_533 -0.9 -2.6 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_1220 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_238 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_3014 -0.8 -1.7 P2-like prophage tail protein X compare
Pf6N2E2_144 -0.8 -6.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_1884 -0.8 -3.0 oxidoreductase, short-chain dehydrogenase/reductase family compare
Pf6N2E2_5155 -0.8 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2124 -0.8 -1.3 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2018 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_476 -0.8 -2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1834 -0.8 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3323 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_127 -0.8 -1.0 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_2912 -0.8 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_2984 -0.8 -1.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_902 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_620 -0.8 -3.7 BatD compare
Pf6N2E2_955 -0.8 -2.1 FIG00953508: hypothetical protein compare
Pf6N2E2_4050 -0.8 -1.6 FIG00953718: hypothetical protein compare
Pf6N2E2_5508 -0.7 -1.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4057 -0.7 -0.8 lipoprotein, putative compare
Pf6N2E2_1796 -0.7 -2.0 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_40 -0.7 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4148 -0.7 -3.3 Glutamate-aspartate carrier protein compare
Pf6N2E2_5430 -0.7 -4.2 Transglycosylase, Slt family compare
Pf6N2E2_1474 -0.7 -2.9 SAM-dependent methyltransferases compare
Pf6N2E2_5560 -0.7 -2.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_5845 -0.7 -3.1 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2363 -0.7 -1.4 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_5877 -0.7 -1.9 Phosphohistidine phosphatase SixA compare
Pf6N2E2_3612 -0.7 -1.3 HflK protein compare
Pf6N2E2_5679 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_5928 -0.7 -4.0 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2054 -0.7 -2.9 hypothetical protein compare
Pf6N2E2_5086 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_4414 -0.7 -1.7 FIG00953808: hypothetical protein compare
Pf6N2E2_4706 -0.7 -1.5 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_734 -0.7 -1.6 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_622 -0.7 -1.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4678 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_5768 -0.7 -1.9 DNA recombination-dependent growth factor C compare
Pf6N2E2_145 -0.7 -4.3 putative exported protein compare
Pf6N2E2_2181 -0.7 -1.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2527 -0.7 -2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5103 -0.7 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2714 -0.7 -1.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_724 -0.7 -0.8 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_2469 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_4418 -0.7 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1673 -0.7 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5522 -0.7 -1.8 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_6081 -0.7 -1.8 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_2448 -0.7 -2.1 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_2919 -0.7 -1.4 FIG00955830: hypothetical protein compare
Pf6N2E2_3617 -0.7 -2.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2264 -0.7 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2986 -0.7 -1.9 Transcriptional regulator, LuxR family compare
Pf6N2E2_1824 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_3569 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_1287 -0.7 -1.8 Mobile element protein compare
Pf6N2E2_904 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_6057 -0.7 -1.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1502 -0.7 -0.9 Two-component system regulatory protein compare
Pf6N2E2_2126 -0.7 -2.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2970 -0.7 -2.1 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_3221 -0.6 -2.0 FIG00352444: hypothetical protein compare
Pf6N2E2_817 -0.6 -2.6 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_2296 -0.6 -1.6 FIG00954767: hypothetical protein compare
Pf6N2E2_186 -0.6 -2.0 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_3875 -0.6 -0.7 FIG00953324: hypothetical protein compare
Pf6N2E2_2756 -0.6 -3.1 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5756 -0.6 -1.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_39 -0.6 -1.9 FIG00857858: hypothetical protein compare
Pf6N2E2_407 -0.6 -2.4 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_1735 -0.6 -1.2 PhnB protein compare
Pf6N2E2_5319 -0.6 -2.5 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5972 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_4562 -0.6 -1.8 L-cystine uptake protein TcyP compare
Pf6N2E2_2425 -0.6 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1215 -0.6 -1.5 probable membrane protein YPO2362 compare
Pf6N2E2_1611 -0.6 -2.3 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_1452 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_3062 -0.6 -2.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_648 -0.6 -1.3 General secretion pathway protein K compare
Pf6N2E2_1871 -0.6 -2.7 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
Pf6N2E2_987 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_2098 -0.6 -2.0 heme uptake regulator compare
Pf6N2E2_5320 -0.6 -3.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4423 -0.6 -1.6 FIG00953342: hypothetical protein compare
Pf6N2E2_5944 -0.6 -2.7 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_1124 -0.6 -1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4479 -0.6 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_625 -0.6 -2.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3830 -0.6 -1.9 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_426 -0.6 -2.2 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_1817 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_3695 -0.6 -2.1 Helix-turn-helix motif compare
Pf6N2E2_5030 -0.6 -2.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_1249 -0.6 -1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_2711 -0.6 -2.8 Glutamine amidotransferase, class-II compare
Pf6N2E2_4570 -0.6 -1.8 Cation/multidrug efflux pump compare
Pf6N2E2_3251 -0.6 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1508 -0.6 -1.6 DNA-binding response regulator compare
Pf6N2E2_2822 -0.6 -3.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_1514 -0.6 -1.4 lipoprotein OprI, putative compare
Pf6N2E2_2519 -0.6 -0.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_624 -0.6 -2.3 hypothetical protein PA3071 compare
Pf6N2E2_579 -0.6 -1.0 FIG00962753: hypothetical protein compare
Pf6N2E2_2312 -0.6 -0.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_3081 -0.6 -2.0 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_4993 -0.6 -1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_1248 -0.6 -1.2 MutT/nudix family protein compare
Pf6N2E2_1864 -0.6 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2106 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_1784 -0.6 -1.5 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5758 -0.6 -1.3 FIG00957314: hypothetical protein compare
Pf6N2E2_375 -0.6 -2.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1089 -0.6 -0.9 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare


Specific Phenotypes

For 5 genes in this experiment

For stress Sodium arsenate dibasic heptahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium arsenate dibasic heptahydrate across organisms