Experiment set6IT062 for Shewanella loihica PV-4
LB with Tetracycline hydrochloride 0.0004 mg/ml
Group: stressMedia: LB + Tetracycline hydrochloride (4e-04 mg/ml)
Culturing: PV4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Mark on 1/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1089 F5,F6
Specific Phenotypes
For 3 genes in this experiment
For stress Tetracycline hydrochloride in Shewanella loihica PV-4
For stress Tetracycline hydrochloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| ZZ gjo need homes | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Galactose metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| UDP-α-D-glucose biosynthesis | 2 | 2 | 1 |
| sucrose degradation II (sucrose synthase) | 5 | 4 | 1 |
| superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis | 6 | 3 | 1 |
| stachyose degradation | 7 | 5 | 1 |
| sucrose biosynthesis II | 8 | 6 | 1 |
| sucrose biosynthesis I (from photosynthesis) | 9 | 7 | 1 |
| colanic acid building blocks biosynthesis | 11 | 6 | 1 |
| type I lipoteichoic acid biosynthesis (S. aureus) | 17 | 5 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 15 | 1 |