Experiment set6IT062 for Sphingomonas koreensis DSMZ 15582

Compare to:

D-Cellobiose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0657 +1.8 5.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0209 +1.2 11.5 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_2020 +1.2 8.5 Glycosyltransferase compare
Ga0059261_3698 +1.1 10.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_4022 +1.0 7.1 Signal transduction histidine kinase compare
Ga0059261_2018 +1.0 8.6 hypothetical protein compare
Ga0059261_3810 +1.0 6.1 Transcriptional regulators compare
Ga0059261_2746 +1.0 7.5 Predicted sugar nucleotidyltransferases compare
Ga0059261_1560 +0.9 5.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_0225 +0.9 8.1 polyphosphate kinase 1 compare
Ga0059261_1868 +0.9 4.3 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_3783 +0.9 4.7 hypothetical protein compare
Ga0059261_4185 +0.9 2.8 hypothetical protein compare
Ga0059261_1578 +0.8 5.5 Rhodanese-like domain compare
Ga0059261_1303 +0.8 4.1 hypothetical protein compare
Ga0059261_2227 +0.8 6.6 aminodeoxychorismate synthase, component I, bacterial clade compare
Ga0059261_2415 +0.7 6.7 Phytoene/squalene synthetase compare
Ga0059261_1420 +0.7 4.8 Protein of unknown function (DUF2490) compare
Ga0059261_3652 +0.7 4.6 phosphate transport system regulatory protein PhoU compare
Ga0059261_2019 +0.7 2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_1569 +0.7 1.8 Response regulator receiver domain compare
Ga0059261_0155 +0.6 5.2 peroxiredoxin compare
Ga0059261_3693 +0.6 5.1 Putative arginyl-tRNA:protein arginylyltransferase compare
Ga0059261_3208 +0.6 2.3 hypothetical protein compare
Ga0059261_0133 +0.6 2.9 GTP-binding protein HflX compare
Ga0059261_3784 +0.6 4.8 DNA mismatch repair protein MutS compare
Ga0059261_2416 +0.6 3.6 TIGR00730 family protein compare
Ga0059261_1870 +0.6 4.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_0272 +0.6 2.7 Uncharacterized small protein compare
Ga0059261_1035 +0.6 2.3 hypothetical protein compare
Ga0059261_2063 +0.6 1.9 Flagellar biosynthesis protein, FliO compare
Ga0059261_0907 +0.5 2.6 Predicted transcriptional regulators compare
Ga0059261_1126 +0.5 2.4 Response regulator compare
Ga0059261_4196 +0.5 4.6 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_2987 +0.5 2.1 hypothetical protein compare
Ga0059261_0850 +0.5 2.2 hypothetical protein compare
Ga0059261_0057 +0.5 4.9 Glycosyltransferase compare
Ga0059261_1915 +0.5 3.2 transcriptional regulator, MucR family compare
Ga0059261_0720 +0.5 2.9 Predicted small integral membrane protein compare
Ga0059261_1414 +0.5 3.4 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
Ga0059261_3188 +0.5 4.6 Acetyltransferase (GNAT) domain compare
Ga0059261_1924 +0.5 4.8 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Ga0059261_0040 +0.5 4.5 hypothetical protein compare
Ga0059261_0131 +0.5 2.9 hypothetical protein compare
Ga0059261_4197 +0.5 4.2 sugar transferase, PEP-CTERM/EpsH1 system associated compare
Ga0059261_1871 +0.5 4.0 ABC transport permease subunit compare
Ga0059261_2072 +0.5 3.1 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Ga0059261_0220 +0.5 4.1 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_0725 +0.5 2.8 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_1595 +0.5 4.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1574 +0.5 2.0 Superfamily II DNA and RNA helicases compare
Ga0059261_4199 +0.5 4.1 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_4198 +0.5 3.8 exosortase A compare
Ga0059261_0675 +0.5 1.6 hypothetical protein compare
Ga0059261_2504 +0.5 3.5 ribosome silencing factor RsfS/YbeB/iojap compare
Ga0059261_4193 +0.5 4.3 hypothetical protein compare
Ga0059261_1928 +0.5 2.4 Predicted permeases compare
Ga0059261_0659 +0.5 1.4 transcriptional regulator, HxlR family compare
Ga0059261_1472 +0.5 1.5 hypothetical protein compare
Ga0059261_0252 +0.4 1.6 SpoIIAA-like compare
Ga0059261_3965 +0.4 2.9 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_3780 +0.4 3.0 hypothetical protein compare
Ga0059261_2744 +0.4 3.8 CDP-alcohol phosphatidyltransferase compare
Ga0059261_1756 +0.4 1.4 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_4195 +0.4 3.5 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_1505 +0.4 3.2 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) compare
Ga0059261_3364 +0.4 3.9 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_1419 +0.4 2.4 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_3661 +0.4 3.5 Uncharacterised nucleotidyltransferase compare
Ga0059261_1929 +0.4 2.3 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0494 +0.4 0.9 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_3631 +0.4 2.8 hypothetical protein compare
Ga0059261_2093 +0.4 2.9 flagellar basal-body rod protein FlgF compare
Ga0059261_3144 +0.4 0.9 Transcriptional regulator compare
Ga0059261_2745 +0.4 3.7 Myo-inositol-1-phosphate synthase compare
Ga0059261_2083 +0.4 3.7 hypothetical protein compare
Ga0059261_2368 +0.4 1.1 Phage baseplate assembly protein W compare
Ga0059261_3748 +0.4 1.2 ribosomal protein L15, bacterial/organelle compare
Ga0059261_3658 +0.4 3.5 hypothetical protein compare
Ga0059261_2094 +0.4 2.9 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Ga0059261_4194 +0.4 3.2 Type II secretory pathway, component ExeA (predicted ATPase) compare
Ga0059261_4212 +0.4 2.3 TPR repeat compare
Ga0059261_1022 +0.4 1.8 hypothetical protein compare
Ga0059261_3362 +0.4 3.5 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_3569 +0.4 2.1 chaperone protein DnaJ compare
Ga0059261_0827 +0.4 1.6 hypothetical protein compare
Ga0059261_4191 +0.4 2.3 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily compare
Ga0059261_0045 +0.4 1.6 hypothetical protein compare
Ga0059261_3265 +0.4 3.3 Glycerol-3-phosphate dehydrogenase compare
Ga0059261_3602 +0.4 1.1 Glutaredoxin, GrxC family compare
Ga0059261_2090 +0.4 2.4 flagellar basal-body rod protein FlgC compare
Ga0059261_4190 +0.4 2.9 Periplasmic protein involved in polysaccharide export compare
Ga0059261_2413 +0.4 1.0 hypothetical protein compare
Ga0059261_1016 +0.4 1.3 Cupin domain compare
Ga0059261_2215 +0.4 0.9 Thiamine monophosphate synthase compare
Ga0059261_3762 +0.4 1.7 Uncharacterized conserved protein compare
Ga0059261_3896 +0.4 1.1 integration host factor, beta subunit compare
Ga0059261_3615 +0.4 0.7 hypothetical protein compare
Ga0059261_2698 +0.4 2.8 N-acetylmuramoyl-L-alanine amidase compare
Ga0059261_0038 +0.4 1.9 Transcriptional regulators compare
Ga0059261_3696 +0.4 2.0 hypothetical protein compare
Ga0059261_0619 +0.3 1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Ga0059261_1396 +0.3 1.1 EF-hand domain pair compare
Ga0059261_3335 +0.3 1.1 hypothetical protein compare
Ga0059261_0270 +0.3 2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0781 +0.3 1.0 hypothetical protein compare
Ga0059261_2082 +0.3 2.7 flagellar biosynthesis protein FlhA compare
Ga0059261_2074 +0.3 2.5 Sigma-54 interaction domain/Bacterial regulatory protein, Fis family compare
Ga0059261_2531 +0.3 1.6 conserved hypothetical integral membrane protein compare
Ga0059261_0493 +0.3 1.0 hypothetical protein compare
Ga0059261_3562 +0.3 1.7 Glycosyltransferase compare
Ga0059261_1533 +0.3 2.8 conserved hypothetical integral membrane protein compare
Ga0059261_1652 +0.3 0.7 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_2069 +0.3 2.8 ATPase, FliI/YscN family compare
Ga0059261_3403 +0.3 2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_1566 +0.3 2.4 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_2144 +0.3 1.9 thymidine kinase (EC 2.7.1.21) compare
Ga0059261_4217 +0.3 1.0 hypothetical protein compare
Ga0059261_2619 +0.3 2.5 Protein involved in cellulose biosynthesis (CelD) compare
Ga0059261_0673 +0.3 1.6 hypothetical protein compare
Ga0059261_2071 +0.3 1.3 flagellar motor switch protein FliG compare
Ga0059261_2534 +0.3 1.1 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_0332 +0.3 2.5 Esterase/lipase compare
Ga0059261_1236 +0.3 2.6 Methylase of chemotaxis methyl-accepting proteins compare
Ga0059261_3451 +0.3 1.1 hypothetical protein compare
Ga0059261_1208 +0.3 1.8 hypothetical protein compare
Ga0059261_2914 +0.3 1.3 Type IV secretory pathway, TrbD component compare
Ga0059261_1392 +0.3 2.5 hypothetical protein compare
Ga0059261_0267 +0.3 0.9 Predicted membrane protein compare
Ga0059261_3660 +0.3 2.5 HprK-related kinase A compare
Ga0059261_3431 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_1541 +0.3 2.1 Predicted esterase of the alpha/beta hydrolase fold compare
Ga0059261_1561 +0.3 1.7 Signal transduction histidine kinase compare
Ga0059261_0276 +0.3 1.2 Protein required for attachment to host cells compare
Ga0059261_4222 +0.3 2.2 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1587 +0.3 1.8 hypothetical protein compare
Ga0059261_1127 +0.3 2.7 Alginate export compare
Ga0059261_3271 +0.3 0.5 arsenate reductase (glutaredoxin) compare
Ga0059261_1146 +0.3 1.6 Flagellar basal body L-ring protein compare
Ga0059261_4231 +0.3 2.5 Predicted periplasmic protein compare
Ga0059261_1095 +0.3 1.9 Flagellar motor switch protein compare
Ga0059261_0120 +0.3 2.4 lytic murein transglycosylase compare
Ga0059261_1078 +0.3 1.0 Response regulator receiver domain compare
Ga0059261_3707 +0.3 1.9 Predicted DNA alkylation repair enzyme compare
Ga0059261_1077 +0.3 1.5 STAS domain compare
Ga0059261_0807 +0.3 1.4 RNA methyltransferase, RsmE family compare
Ga0059261_4192 +0.3 0.5 ATPases involved in chromosome partitioning compare
Ga0059261_2502 +0.3 1.8 Membrane-bound metallopeptidase compare
Ga0059261_0982 +0.3 2.2 acetyl-CoA acetyltransferases compare
Ga0059261_1826 +0.3 1.2 Domain of unknown function (DUF1905) compare
Ga0059261_2680 +0.3 0.7 hypothetical protein compare
Ga0059261_3717 +0.3 1.9 Uncharacterized conserved protein compare
Ga0059261_2026 +0.3 2.1 Nucleoside-diphosphate-sugar epimerases compare
Ga0059261_0072 +0.3 1.7 ATPases involved in chromosome partitioning compare
Ga0059261_1951 +0.3 1.6 NADPH-glutathione reductase (EC 1.8.1.7) compare
Ga0059261_1265 +0.3 1.2 hypothetical protein compare
Ga0059261_3802 +0.3 2.0 Phosphate transport regulator (distant homolog of PhoU) compare
Ga0059261_2742 +0.3 1.2 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
Ga0059261_3139 +0.3 1.7 Predicted membrane protein compare
Ga0059261_3710 +0.3 2.1 Peptidase family M28 compare
Ga0059261_3164 +0.3 1.7 Protein of unknown function (DUF3297) compare
Ga0059261_0724 +0.3 2.0 Acetyltransferase (GNAT) domain compare
Ga0059261_3085 +0.3 0.9 Predicted transcriptional regulators compare
Ga0059261_2730 +0.3 0.6 Sortase and related acyltransferases compare
Ga0059261_0344 +0.3 0.9 Molecular chaperone (small heat shock protein) compare
Ga0059261_1478 +0.3 1.3 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_1337 +0.3 1.7 Predicted enzyme related to lactoylglutathione lyase compare
Ga0059261_2255 +0.3 1.3 nitrogen regulatory protein P-II family compare
Ga0059261_1504 +0.3 1.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_0686 +0.3 2.1 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Ga0059261_1869 +0.3 1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_2270 +0.3 1.8 hypothetical protein compare
Ga0059261_1535 +0.3 2.2 Predicted transcriptional regulators compare
Ga0059261_1409 +0.3 2.0 hypothetical protein compare
Ga0059261_2825 +0.3 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_0626 +0.3 1.4 Fructose-2,6-bisphosphatase compare
Ga0059261_2466 +0.3 2.0 DnaJ domain/DnaJ C terminal domain compare
Ga0059261_1032 +0.3 1.4 protein CrcB compare
Ga0059261_1563 +0.3 0.7 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_4169 +0.3 1.1 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_2821 +0.3 1.8 hypothetical protein compare
Ga0059261_4157 +0.3 2.1 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3073 +0.3 1.2 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_2529 +0.3 1.7 Predicted integral membrane protein compare
Ga0059261_0887 +0.3 1.9 Predicted transcriptional regulators compare
Ga0059261_2481 +0.3 1.5 Ppx/GppA phosphatase family compare
Ga0059261_3140 +0.3 1.7 Regulator of competence-specific genes compare
Ga0059261_2170 +0.3 2.2 Thioredoxin domain-containing protein compare
Ga0059261_2060 +0.3 1.9 flagellar biosynthetic protein FliR compare
Ga0059261_2324 +0.3 1.4 integration host factor, alpha subunit compare
Ga0059261_3622 +0.3 1.5 hypothetical protein compare
Ga0059261_1446 +0.3 1.7 hypothetical protein compare
Ga0059261_3703 +0.3 1.3 Uncharacterized conserved protein compare
Ga0059261_4215 +0.2 1.5 Predicted N-formylglutamate amidohydrolase compare
Ga0059261_2754 +0.2 2.3 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Ga0059261_0879 +0.2 1.9 ribosomal RNA small subunit methyltransferase A compare
Ga0059261_2658 +0.2 1.0 Transcriptional regulators compare
Ga0059261_0635 +0.2 2.0 choice-of-anchor A domain compare
Ga0059261_2089 +0.2 1.1 flagellar basal-body rod protein FlgB compare
Ga0059261_2065 +0.2 1.5 Flagellar motor switch protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Cellobiose in Sphingomonas koreensis DSMZ 15582

For carbon source D-Cellobiose across organisms