Experiment set6IT061 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Minimal media pH8

200 most important genes:

  gene name fitness t score description  
AO353_10710 -4.5 -4.4 tryptophan synthase subunit beta compare
AO353_02070 -4.5 -7.5 prephenate dehydratase compare
AO353_20635 -4.3 -14.6 3-isopropylmalate dehydrogenase compare
AO353_14505 -4.3 -12.7 ketol-acid reductoisomerase compare
AO353_13070 -4.3 -10.3 phosphoserine phosphatase compare
AO353_08185 -4.3 -11.7 methionine biosynthesis protein MetW compare
AO353_05115 -4.2 -13.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20625 -4.2 -5.7 3-isopropylmalate dehydratase compare
AO353_12365 -4.2 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_08885 -4.1 -21.2 polyphosphate kinase compare
AO353_12520 -4.1 -13.8 glutamate synthase compare
AO353_12515 -4.1 -24.6 glutamate synthase compare
AO353_20695 -4.0 -8.9 O-succinylhomoserine sulfhydrylase compare
AO353_12085 -4.0 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20665 -4.0 -12.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08475 -4.0 -11.1 phosphoserine phosphatase compare
AO353_07210 -3.9 -7.4 indole-3-glycerol-phosphate synthase compare
AO353_07230 -3.9 -19.7 anthranilate synthase compare
AO353_12070 -3.9 -11.4 imidazoleglycerol-phosphate dehydratase compare
AO353_02075 -3.9 -14.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20540 -3.8 -10.3 aromatic amino acid aminotransferase compare
AO353_12360 -3.8 -10.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12090 -3.8 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05110 -3.7 -14.2 histidinol dehydrogenase compare
AO353_08345 -3.6 -10.9 dihydroxy-acid dehydratase compare
AO353_08685 -3.6 -11.3 N-acetylglutamate synthase compare
AO353_00310 -3.6 -12.5 transaldolase compare
AO353_19060 -3.6 -7.5 CysB family transcriptional regulator compare
AO353_13165 -3.6 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
AO353_09240 -3.5 -3.4 acetylglutamate kinase compare
AO353_08180 -3.4 -16.0 homoserine O-acetyltransferase compare
AO353_07220 -3.4 -10.9 anthranilate synthase compare
AO353_04105 -3.4 -11.6 argininosuccinate synthase compare
AO353_02710 -3.4 -16.7 (p)ppGpp synthetase compare
AO353_03360 -3.4 -11.8 glucose-6-phosphate dehydrogenase compare
AO353_20620 -3.4 -8.0 isopropylmalate isomerase compare
AO353_12075 -3.4 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07215 -3.3 -10.0 anthranilate phosphoribosyltransferase compare
AO353_10670 -3.3 -9.3 shikimate dehydrogenase compare
AO353_07155 -3.3 -10.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14495 -3.3 -14.6 acetolactate synthase 3 catalytic subunit compare
AO353_08165 -3.3 -4.5 pyrroline-5-carboxylate reductase compare
AO353_14775 -3.2 -10.7 hypothetical protein compare
AO353_12500 -3.2 -2.2 shikimate kinase compare
AO353_02685 -3.2 -6.2 phosphoribosylglycinamide formyltransferase compare
AO353_12105 -3.2 -10.5 peptidase S41 compare
AO353_13100 -3.1 -3.7 GTPase RsgA compare
AO353_00825 -3.1 -7.0 porin compare
AO353_07515 -3.1 -3.6 transporter compare
AO353_22800 -3.0 -4.4 sulfite reductase compare
AO353_02250 -2.9 -5.7 chorismate synthase compare
AO353_14420 -2.9 -7.3 molecular chaperone DnaK compare
AO353_10030 -2.9 -13.4 pyruvate carboxylase subunit A compare
AO353_07520 -2.9 -16.0 8-amino-7-oxononanoate synthase compare
AO353_14400 -2.9 -6.0 Fis family transcriptional regulator compare
AO353_09000 -2.8 -8.3 argininosuccinate lyase compare
AO353_07525 -2.8 -14.3 biotin synthase compare
AO353_04155 -2.8 -12.8 ornithine carbamoyltransferase compare
AO353_08510 -2.8 -6.8 3-phosphoglycerate dehydrogenase compare
AO353_16940 -2.7 -8.2 deoxycytidine triphosphate deaminase compare
AO353_10025 -2.7 -16.5 pyruvate carboxylase subunit B compare
AO353_03415 -2.7 -8.3 glucokinase compare
AO353_07505 -2.7 -10.9 dethiobiotin synthetase compare
AO353_07510 -2.7 -12.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08045 -2.7 -16.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_09285 -2.7 -11.4 reactive intermediate/imine deaminase compare
AO353_14115 -2.7 -8.3 gamma-glutamyl kinase compare
AO353_08015 -2.6 -8.4 5,10-methylenetetrahydrofolate reductase compare
AO353_10035 -2.6 -9.1 LysR family transcriptional regulator compare
AO353_14595 -2.6 -11.3 carbonate dehydratase compare
AO353_05080 -2.6 -13.2 sulfate adenylyltransferase compare
AO353_08780 -2.6 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_04355 -2.6 -3.6 homoserine dehydrogenase compare
AO353_14370 -2.5 -8.4 glucose-6-phosphate isomerase compare
AO353_15925 -2.5 -9.9 2-isopropylmalate synthase compare
AO353_14500 -2.5 -7.4 acetolactate synthase 3 regulatory subunit compare
AO353_05105 -2.5 -12.7 histidinol-phosphate aminotransferase compare
AO353_02975 -2.5 -4.9 aspartate kinase compare
AO353_05075 -2.5 -11.2 adenylylsulfate kinase compare
AO353_03525 -2.3 -10.1 quinolinate synthase A compare
AO353_06495 -2.3 -5.3 gamma-glutamyl phosphate reductase compare
AO353_05520 -2.2 -8.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_11730 -2.2 -11.9 glutamate--cysteine ligase compare
AO353_20175 -2.1 -4.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_12115 -2.1 -3.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03020 -2.0 -7.3 arginine N-succinyltransferase compare
AO353_06455 -2.0 -3.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_10705 -2.0 -4.2 tryptophan synthase subunit alpha compare
AO353_13640 -1.9 -4.8 histidine kinase compare
AO353_20170 -1.9 -5.0 trigger factor compare
AO353_03585 -1.9 -2.3 ATP-dependent DNA helicase RuvA compare
AO353_07355 -1.9 -7.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10730 -1.8 -1.6 hypothetical protein compare
AO353_03615 -1.8 -4.1 cold-shock protein compare
AO353_03580 -1.8 -4.6 ATP-dependent DNA helicase RuvB compare
AO353_27650 -1.8 -5.2 cell division protein FtsK compare
AO353_05240 -1.7 -2.8 rod shape-determining protein MreD compare
AO353_19360 -1.7 -3.3 peroxiredoxin compare
AO353_11850 -1.7 -5.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_03775 -1.7 -8.5 pyruvate kinase compare
AO353_24130 -1.7 -4.3 hypothetical protein compare
AO353_23245 -1.7 -3.2 DNA-3-methyladenine glycosylase compare
AO353_08350 -1.6 -7.4 hypothetical protein compare
AO353_03420 -1.6 -4.2 phosphogluconate dehydratase compare
AO353_02720 -1.6 -5.8 cysteine synthase compare
AO353_05150 -1.6 -5.8 ABC transporter ATP-binding protein compare
AO353_14220 -1.6 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_06045 -1.6 -7.1 exodeoxyribonuclease V subunit beta compare
AO353_06585 -1.6 -6.7 hypothetical protein compare
AO353_17035 -1.6 -6.2 hypothetical protein compare
AO353_00750 -1.6 -5.1 GntR family transcriptional regulator compare
AO353_08115 -1.5 -6.1 energy transducer TonB compare
AO353_12145 -1.5 -3.8 nitrogen regulation protein NR(I) compare
AO353_04520 -1.5 -4.9 elongation factor 4 compare
AO353_04565 -1.4 -5.2 nucleoid-associated protein compare
AO353_05690 -1.4 -4.0 SsrA-binding protein compare
AO353_03590 -1.4 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_06050 -1.4 -6.1 exodeoxyribonuclease V subunit gamma compare
AO353_01375 -1.4 -6.1 phosphate acyltransferase compare
AO353_00495 -1.4 -1.9 DNA topoisomerase I compare
AO353_17620 -1.4 -10.1 L-aspartate oxidase compare
AO353_01780 -1.4 -8.0 heat-shock protein Hsp90 compare
AO353_14740 -1.3 -3.4 GTP-binding protein compare
AO353_11770 -1.3 -2.2 molecular chaperone Hsp33 compare
AO353_15250 -1.3 -3.5 cytochrome B compare
AO353_10455 -1.3 -2.3 tRNA modification GTPase MnmE compare
AO353_13605 -1.3 -6.5 oxidoreductase compare
AO353_21625 -1.3 -2.1 Fe/S biogenesis protein NfuA compare
AO353_05130 -1.2 -2.1 anti-anti-sigma factor compare
AO353_09890 -1.2 -4.5 phosphate ABC transporter ATP-binding protein compare
AO353_05145 -1.2 -5.3 ABC transporter permease compare
AO353_03015 -1.2 -4.7 arginine N-succinyltransferase compare
AO353_21655 -1.2 -4.0 cobalamin biosynthesis protein CobW compare
AO353_13610 -1.2 -2.4 precorrin isomerase compare
AO353_00330 -1.2 -6.9 hypothetical protein compare
AO353_20185 -1.2 -4.9 DNA-binding protein compare
AO353_15725 -1.2 -4.2 hypothetical protein compare
AO353_20630 -1.1 -5.7 SAM-dependent methyltransferase compare
AO353_00515 -1.1 -2.8 hypothetical protein compare
AO353_16450 -1.1 -7.3 protein-PII uridylyltransferase compare
AO353_10040 -1.1 -6.1 transcriptional regulator compare
AO353_00650 -1.1 -2.0 cytochrome biogenesis protein compare
AO353_05135 -1.1 -5.9 toluene tolerance protein compare
AO353_02635 -1.1 -6.3 cobyrinic acid a,c-diamide synthase compare
AO353_20370 -1.1 -3.2 MerR family transcriptional regulator compare
AO353_09260 -1.1 -4.8 ribonuclease PH compare
AO353_04175 -1.0 -3.2 glycerol uptake facilitator GlpF compare
AO353_19295 -1.0 -2.7 hypothetical protein compare
AO353_07315 -1.0 -2.1 rRNA methyltransferase compare
AO353_06155 -1.0 -5.8 copper-transporting ATPase compare
AO353_12345 -1.0 -1.9 twin-arginine protein translocation system subunit TatC compare
AO353_11165 -1.0 -5.2 hypothetical protein compare
AO353_00490 -1.0 -2.9 PasA protein compare
AO353_14795 -1.0 -3.6 molybdopterin-synthase adenylyltransferase compare
AO353_08505 -1.0 -6.7 FAD-linked oxidase compare
AO353_00430 -1.0 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05140 -1.0 -5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_22025 -1.0 -2.7 iron-sulfur cluster repair di-iron protein compare
AO353_03250 -1.0 -2.4 gluconokinase compare
AO353_10945 -1.0 -2.6 cytochrome C compare
AO353_11530 -1.0 -4.7 diguanylate cyclase compare
AO353_14405 -1.0 -6.2 ATPase compare
AO353_20410 -1.0 -2.1 hypothetical protein compare
AO353_15490 -1.0 -2.0 hypothetical protein compare
AO353_03425 -0.9 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12240 -0.9 -3.7 histidine utilization repressor compare
AO353_13600 -0.9 -3.3 precorrin-6Y C5,15-methyltransferase compare
AO353_21640 -0.9 -1.3 cobalt transporter compare
AO353_20660 -0.9 -3.0 pseudouridine synthase compare
AO353_15905 -0.9 -4.9 outer membrane protein assembly factor BamB compare
AO353_04180 -0.9 -5.5 glycerol kinase compare
AO353_16825 -0.9 -3.8 hypothetical protein compare
AO353_08265 -0.9 -4.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_09045 -0.9 -2.2 hypothetical protein compare
AO353_22920 -0.9 -4.0 GntR family transcriptional regulator compare
AO353_00610 -0.9 -1.9 cytochrome C oxidase Cbb3 compare
AO353_10510 -0.9 -1.3 benzoate transporter compare
AO353_03795 -0.9 -3.4 fumarate hydratase compare
AO353_18890 -0.9 -3.8 cytochrome C compare
AO353_05060 -0.9 -2.0 pressure-regulated protein compare
AO353_09900 -0.9 -5.9 phosphate ABC transporter permease compare
AO353_10430 -0.9 -3.0 chromosome partitioning protein ParB compare
AO353_03545 -0.9 -4.2 hypothetical protein compare
AO353_05325 -0.8 -3.2 GntR family transcriptional regulator compare
AO353_02615 -0.8 -4.4 cobyric acid synthase compare
AO353_04220 -0.8 -2.4 chemotaxis protein CheY compare
AO353_03395 -0.8 -4.9 sugar ABC transporter substrate-binding protein compare
AO353_09040 -0.8 -1.7 diaminopimelate epimerase compare
AO353_03245 -0.8 -4.3 permease DsdX compare
AO353_28380 -0.8 -3.0 GntR family transcriptional regulator compare
AO353_03390 -0.8 -5.7 sugar ABC transporter permease compare
AO353_08640 -0.8 -2.0 hypothetical protein compare
AO353_10985 -0.8 -1.5 hypothetical protein compare
AO353_02100 -0.8 -2.9 phosphoglycolate phosphatase compare
AO353_19145 -0.8 -2.6 protease HtpX compare
AO353_12935 -0.8 -2.5 glycosyltransferase compare
AO353_03025 -0.8 -3.3 acetylornithine aminotransferase compare
AO353_06460 -0.8 -4.6 hypothetical protein compare
AO353_06350 -0.8 -4.9 hydrogenase compare
AO353_09875 -0.8 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in pH experiments