Experiment set6IT061 for Sphingomonas koreensis DSMZ 15582

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L-Glutamic acid monopotassium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0657 +1.9 6.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_3698 +1.3 11.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0209 +1.2 11.1 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_4022 +1.0 8.2 Signal transduction histidine kinase compare
Ga0059261_3693 +0.9 7.3 Putative arginyl-tRNA:protein arginylyltransferase compare
Ga0059261_1301 +0.9 4.2 Methyltransferase domain compare
Ga0059261_2227 +0.7 6.4 aminodeoxychorismate synthase, component I, bacterial clade compare
Ga0059261_4185 +0.6 1.9 hypothetical protein compare
Ga0059261_0494 +0.6 2.2 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_2277 +0.6 1.5 hypothetical protein compare
Ga0059261_1928 +0.6 3.2 Predicted permeases compare
Ga0059261_3615 +0.6 1.3 hypothetical protein compare
Ga0059261_4196 +0.6 4.9 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_4199 +0.6 5.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_4197 +0.6 4.7 sugar transferase, PEP-CTERM/EpsH1 system associated compare
Ga0059261_3783 +0.5 4.0 hypothetical protein compare
Ga0059261_0765 +0.5 2.6 FecR family protein compare
Ga0059261_4190 +0.5 4.2 Periplasmic protein involved in polysaccharide export compare
Ga0059261_1569 +0.5 1.5 Response regulator receiver domain compare
Ga0059261_4194 +0.5 4.1 Type II secretory pathway, component ExeA (predicted ATPase) compare
Ga0059261_3658 +0.5 4.2 hypothetical protein compare
Ga0059261_1574 +0.5 2.6 Superfamily II DNA and RNA helicases compare
Ga0059261_1043 +0.5 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_4198 +0.5 3.8 exosortase A compare
Ga0059261_4193 +0.5 4.3 hypothetical protein compare
Ga0059261_1952 +0.5 3.0 Cupin domain compare
Ga0059261_0770 +0.4 1.4 hypothetical protein compare
Ga0059261_2089 +0.4 2.5 flagellar basal-body rod protein FlgB compare
Ga0059261_0223 +0.4 1.8 Peptidase inhibitor I78 family compare
Ga0059261_2504 +0.4 3.5 ribosome silencing factor RsfS/YbeB/iojap compare
Ga0059261_0040 +0.4 3.9 hypothetical protein compare
Ga0059261_3706 +0.4 2.6 RF-1 domain compare
Ga0059261_4217 +0.4 1.2 hypothetical protein compare
Ga0059261_1451 +0.4 2.4 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_3659 +0.4 1.9 PqqD family protein, HPr-rel-A system compare
Ga0059261_3359 +0.4 1.5 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_3188 +0.4 3.6 Acetyltransferase (GNAT) domain compare
Ga0059261_0084 +0.4 2.3 hypothetical protein compare
Ga0059261_4120 +0.4 1.0 Stress responsive A/B Barrel Domain compare
Ga0059261_3136 +0.4 3.6 Putative protein-S-isoprenylcysteine methyltransferase compare
Ga0059261_3752 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_2774 +0.4 1.4 Transcription elongation factor compare
Ga0059261_1303 +0.4 2.5 hypothetical protein compare
Ga0059261_2270 +0.4 2.0 hypothetical protein compare
Ga0059261_2294 +0.4 1.3 Cell division protein compare
Ga0059261_1562 +0.4 2.5 Uncharacterized conserved protein compare
Ga0059261_3703 +0.4 2.8 Uncharacterized conserved protein compare
Ga0059261_1578 +0.4 2.5 Rhodanese-like domain compare
Ga0059261_1089 +0.4 1.8 Flagellar hook-length control protein compare
Ga0059261_1991 +0.4 1.5 hypothetical protein compare
Ga0059261_1860 +0.4 1.1 Transposase compare
Ga0059261_1862 +0.4 1.1 Transposase compare
Ga0059261_2090 +0.4 2.4 flagellar basal-body rod protein FlgC compare
Ga0059261_3871 +0.4 1.2 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_1035 +0.4 1.2 hypothetical protein compare
Ga0059261_1287 +0.4 2.9 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_0675 +0.4 1.2 hypothetical protein compare
Ga0059261_4167 +0.4 3.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Ga0059261_0393 +0.4 2.0 hypothetical protein compare
Ga0059261_2578 +0.4 2.3 Protein of unknown function (DUF2840) compare
Ga0059261_1595 +0.4 3.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1478 +0.4 1.8 Predicted dioxygenase of extradiol dioxygenase family compare
Ga0059261_2074 +0.4 2.8 Sigma-54 interaction domain/Bacterial regulatory protein, Fis family compare
Ga0059261_4191 +0.4 1.9 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily compare
Ga0059261_3631 +0.4 2.6 hypothetical protein compare
Ga0059261_3140 +0.4 2.7 Regulator of competence-specific genes compare
Ga0059261_0120 +0.4 2.9 lytic murein transglycosylase compare
Ga0059261_3168 +0.4 2.1 peroxiredoxin, OsmC subfamily compare
Ga0059261_0155 +0.4 3.0 peroxiredoxin compare
Ga0059261_2071 +0.4 1.6 flagellar motor switch protein FliG compare
Ga0059261_0811 +0.4 2.0 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_2083 +0.4 3.0 hypothetical protein compare
Ga0059261_2082 +0.4 2.9 flagellar biosynthesis protein FlhA compare
Ga0059261_0225 +0.3 2.9 polyphosphate kinase 1 compare
Ga0059261_1285 +0.3 2.3 Uncharacterized conserved protein compare
Ga0059261_2951 +0.3 1.0 Heavy-metal resistance compare
Ga0059261_4171 +0.3 1.3 redox-sensitive transcriptional activator SoxR compare
Ga0059261_0284 +0.3 2.9 Leucyl aminopeptidase compare
Ga0059261_2094 +0.3 2.3 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Ga0059261_0220 +0.3 2.6 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_4133 +0.3 1.9 hypothetical protein compare
Ga0059261_0796 +0.3 1.0 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Ga0059261_1078 +0.3 1.0 Response regulator receiver domain compare
Ga0059261_2088 +0.3 1.8 Flagellar motor component compare
Ga0059261_0273 +0.3 2.1 PilZ domain compare
Ga0059261_3708 +0.3 2.0 GAF domain-containing protein compare
Ga0059261_0287 +0.3 1.9 hypothetical protein compare
Ga0059261_3451 +0.3 0.5 hypothetical protein compare
Ga0059261_3661 +0.3 2.6 Uncharacterised nucleotidyltransferase compare
Ga0059261_3660 +0.3 2.9 HprK-related kinase A compare
Ga0059261_3146 +0.3 2.9 Acyltransferase family compare
Ga0059261_4184 +0.3 1.9 exosortase A system-associated hydrolase 1 compare
Ga0059261_2619 +0.3 2.6 Protein involved in cellulose biosynthesis (CelD) compare
Ga0059261_4051 +0.3 1.4 Transcriptional regulator compare
Ga0059261_2534 +0.3 2.1 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_4195 +0.3 2.7 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_1652 +0.3 0.8 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_4015 +0.3 1.8 Putative transcriptional regulator compare
Ga0059261_3556 +0.3 1.3 transcriptional regulator, TetR family compare
Ga0059261_2502 +0.3 2.1 Membrane-bound metallopeptidase compare
Ga0059261_3971 +0.3 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_4134 +0.3 1.5 tRNA compare
Ga0059261_0673 +0.3 1.6 hypothetical protein compare
Ga0059261_0357 +0.3 1.7 hypothetical protein compare
Ga0059261_2098 +0.3 1.8 flagellar hook-associated protein FlgK compare
Ga0059261_3362 +0.3 2.9 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_3122 +0.3 2.8 Methyltransferase domain compare
Ga0059261_0099 +0.3 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1336 +0.3 2.1 transcriptional regulator, HxlR family compare
Ga0059261_3151 +0.3 2.6 hypothetical protein compare
Ga0059261_2325 +0.3 1.7 MerR HTH family regulatory protein compare
Ga0059261_1087 +0.3 1.7 hypothetical protein compare
Ga0059261_1847 +0.3 1.7 hypothetical protein compare
Ga0059261_1772 +0.3 1.6 MobA/MobL family compare
Ga0059261_1261 +0.3 1.6 hypothetical protein compare
Ga0059261_2694 +0.3 1.8 RadC-like JAB domain compare
Ga0059261_0127 +0.3 2.0 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Ga0059261_2448 +0.3 1.1 DNA protecting protein DprA compare
Ga0059261_3364 +0.3 2.7 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_0344 +0.3 1.2 Molecular chaperone (small heat shock protein) compare
Ga0059261_2086 +0.3 0.7 SAF-like compare
Ga0059261_2429 +0.3 1.5 2'-5' RNA ligase superfamily compare
Ga0059261_0757 +0.3 0.8 Predicted transcriptional regulators compare
Ga0059261_0200 +0.3 1.9 Xaa-Pro aminopeptidase compare
Ga0059261_1064 +0.3 1.2 Uncharacterized conserved protein compare
Ga0059261_0133 +0.3 1.5 GTP-binding protein HflX compare
Ga0059261_2593 +0.3 1.7 hypothetical protein compare
Ga0059261_2084 +0.3 1.7 FlgN protein compare
Ga0059261_4001 +0.3 1.9 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_0270 +0.3 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3720 +0.3 1.1 Integral membrane protein CcmA involved in cell shape determination compare
Ga0059261_0071 +0.3 2.5 Sporulation related domain/Sel1 repeat compare
Ga0059261_0735 +0.3 2.0 5,10-methenyltetrahydrofolate synthetase compare
Ga0059261_1564 +0.3 1.4 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_1504 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_0199 +0.3 1.1 hypothetical protein compare
Ga0059261_2548 +0.3 1.0 tRNA compare
Ga0059261_0974 +0.3 1.8 AraC-type DNA-binding domain-containing proteins compare
Ga0059261_3086 +0.3 2.1 Rhodanese-related sulfurtransferase compare
Ga0059261_1316 +0.3 0.8 hypothetical protein compare
Ga0059261_1818 +0.3 2.1 HhH-GPD superfamily base excision DNA repair protein compare
Ga0059261_0035 +0.3 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_4067 +0.3 2.1 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_1985 +0.3 0.8 transcriptional regulator NrdR compare
Ga0059261_2091 +0.3 1.9 Flagellar hook capping protein compare
Ga0059261_0946 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_3643 +0.3 2.1 Cell wall hydrolyses involved in spore germination compare
Ga0059261_0907 +0.3 1.3 Predicted transcriptional regulators compare
Ga0059261_0685 +0.3 0.6 pyruvate kinase compare
Ga0059261_2654 +0.3 1.8 Ribulose 1,5-bisphosphate carboxylase, large subunit compare
Ga0059261_2698 +0.3 2.0 N-acetylmuramoyl-L-alanine amidase compare
Ga0059261_3174 +0.3 1.2 EF hand compare
Ga0059261_2095 +0.3 1.9 Flagellar basal body L-ring protein compare
Ga0059261_2068 +0.3 1.9 hypothetical protein compare
Ga0059261_1490 +0.3 2.3 Glycosyltransferase compare
Ga0059261_3376 +0.3 1.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Ga0059261_3784 +0.3 2.3 DNA mismatch repair protein MutS compare
Ga0059261_1406 +0.3 1.6 Acetyltransferase (GNAT) family compare
Ga0059261_3707 +0.3 1.5 Predicted DNA alkylation repair enzyme compare
Ga0059261_0724 +0.3 1.7 Acetyltransferase (GNAT) domain compare
Ga0059261_2154 +0.3 1.0 uncharacterized domain 1 compare
Ga0059261_1413 +0.3 2.0 Uncharacterized protein involved in ubiquinone biosynthesis compare
Ga0059261_0400 +0.3 1.4 hypothetical protein compare
Ga0059261_1523 +0.3 1.8 Transcriptional regulator compare
Ga0059261_4220 +0.3 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3962 +0.3 2.0 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
Ga0059261_3271 +0.3 0.5 arsenate reductase (glutaredoxin) compare
Ga0059261_3696 +0.3 1.2 hypothetical protein compare
Ga0059261_0132 +0.3 2.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_3154 +0.3 1.7 SPFH domain / Band 7 family compare
Ga0059261_4240 +0.3 1.7 hypothetical protein compare
Ga0059261_1505 +0.3 1.7 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) compare
Ga0059261_3141 +0.3 1.0 Acetyltransferases compare
Ga0059261_3026 +0.3 0.9 Cation efflux family compare
Ga0059261_3095 +0.3 1.5 hypothetical protein compare
Ga0059261_4145 +0.3 1.6 phage shock protein C (PspC) family protein compare
Ga0059261_2059 +0.3 2.0 Flagellar biosynthesis pathway, component FlhB compare
Ga0059261_0754 +0.3 1.7 Glutathione S-transferase compare
Ga0059261_4234 +0.3 1.9 Multidrug resistance efflux pump compare
Ga0059261_2667 +0.3 2.2 hypothetical protein compare
Ga0059261_1962 +0.3 1.3 RNase HII (EC 3.1.26.4) compare
Ga0059261_2018 +0.3 1.9 hypothetical protein compare
Ga0059261_3676 +0.2 1.9 Transcriptional regulator compare
Ga0059261_2993 +0.2 1.5 hypothetical protein compare
Ga0059261_2241 +0.2 1.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3621 +0.2 1.9 FOG: EAL domain compare
Ga0059261_2250 +0.2 2.0 ABC-type multidrug transport system, ATPase component compare
Ga0059261_4139 +0.2 0.5 hypothetical protein compare
Ga0059261_3755 +0.2 0.7 Protein of unknown function (DUF2798) compare
Ga0059261_3675 +0.2 1.6 Methyl-accepting chemotaxis protein compare
Ga0059261_1484 +0.2 1.0 hypothetical protein compare
Ga0059261_3347 +0.2 1.5 Domain of unknown function DUF87 compare
Ga0059261_3064 +0.2 1.4 hypothetical protein compare
Ga0059261_3161 +0.2 1.5 tol-pal system-associated acyl-CoA thioesterase compare
Ga0059261_3139 +0.2 1.4 Predicted membrane protein compare
Ga0059261_1561 +0.2 1.7 Signal transduction histidine kinase compare
Ga0059261_1420 +0.2 1.8 Protein of unknown function (DUF2490) compare
Ga0059261_2020 +0.2 2.1 Glycosyltransferase compare
Ga0059261_3545 +0.2 1.0 hypothetical protein compare
Ga0059261_1524 +0.2 1.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Glutamic acid monopotassium salt monohydrate in Sphingomonas koreensis DSMZ 15582

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms