Experiment set6IT060 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3696 -4.2 -1.9 hypothetical protein compare
Pf6N2E2_3658 -3.9 -5.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3611 -3.8 -2.6 HflC protein compare
Pf6N2E2_5705 -3.5 -3.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_70 -3.5 -4.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4773 -3.4 -1.6 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5316 -3.4 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3303 -3.4 -4.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3264 -3.3 -3.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3373 -3.2 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4369 -3.1 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3661 -3.1 -2.1 hypothetical protein compare
Pf6N2E2_2320 -2.9 -3.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5727 -2.9 -7.0 FIG00955360: hypothetical protein compare
Pf6N2E2_2646 -2.8 -2.5 FIG00953416: hypothetical protein compare
Pf6N2E2_2507 -2.8 -6.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2506 -2.7 -12.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2219 -2.6 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5339 -2.6 -6.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2510 -2.6 -5.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3014 -2.5 -3.4 P2-like prophage tail protein X compare
Pf6N2E2_3659 -2.5 -5.7 Protein fixF compare
Pf6N2E2_3271 -2.4 -2.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4416 -2.4 -2.3 Tyrosine recombinase XerC compare
Pf6N2E2_6064 -2.4 -5.3 2-methylaconitate isomerase compare
Pf6N2E2_2010 -2.4 -2.2 hypothetical protein compare
Pf6N2E2_3270 -2.4 -4.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1056 -2.4 -1.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1545 -2.3 -4.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2126 -2.3 -6.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_4187 -2.2 -4.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5001 -2.2 -2.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5014 -2.2 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3842 -2.2 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2217 -2.2 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_923 -2.2 -3.2 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_5156 -2.1 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3252 -2.1 -6.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5338 -2.1 -7.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2509 -2.1 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2317 -2.0 -3.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3610 -2.0 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_6140 -2.0 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4206 -1.9 -2.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2318 -1.9 -6.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2253 -1.9 -3.5 hypothetical protein compare
Pf6N2E2_204 -1.9 -2.1 hypothetical protein compare
Pf6N2E2_5006 -1.9 -5.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4204 -1.8 -1.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4372 -1.8 -4.8 FIG00460773: hypothetical protein compare
Pf6N2E2_2180 -1.8 -3.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2311 -1.8 -6.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5242 -1.8 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2018 -1.8 -3.3 hypothetical protein compare
Pf6N2E2_4075 -1.8 -4.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5406 -1.7 -2.5 FIG00958224: hypothetical protein compare
Pf6N2E2_5068 -1.7 -7.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5505 -1.7 -2.7 hypothetical protein compare
Pf6N2E2_3607 -1.7 -6.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3791 -1.6 -7.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2384 -1.6 -3.8 CmpX compare
Pf6N2E2_3260 -1.6 -3.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5069 -1.6 -4.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4680 -1.6 -3.2 HTH-type transcriptional regulator BetI compare
Pf6N2E2_2508 -1.6 -2.7 hypothetical protein compare
Pf6N2E2_5150 -1.6 -4.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3783 -1.6 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3839 -1.6 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2791 -1.6 -1.7 FIG00954883: hypothetical protein compare
Pf6N2E2_5714 -1.6 -1.3 Flavoprotein WrbA compare
Pf6N2E2_3841 -1.6 -4.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4077 -1.6 -1.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_737 -1.5 -2.1 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2513 -1.5 -2.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3569 -1.5 -2.3 hypothetical protein compare
Pf6N2E2_1040 -1.5 -1.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3942 -1.5 -5.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4928 -1.5 -1.4 Permeases of the major facilitator superfamily compare
Pf6N2E2_4084 -1.5 -5.3 Transcriptional regulator compare
Pf6N2E2_3835 -1.5 -2.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_1492 -1.5 -2.7 No significant database matches compare
Pf6N2E2_6058 -1.5 -3.5 FIG139976: hypothetical protein compare
Pf6N2E2_3039 -1.4 -4.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1220 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_2340 -1.4 -3.2 Transcriptional regulator, GntR family compare
Pf6N2E2_2999 -1.4 -2.7 probable tail fiber assembly protein compare
Pf6N2E2_4453 -1.4 -8.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4584 -1.4 -1.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3261 -1.4 -2.5 hypothetical protein compare
Pf6N2E2_2474 -1.4 -6.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2310 -1.4 -6.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3003 -1.4 -1.5 Bacteriophage protein GP46 compare
Pf6N2E2_4272 -1.4 -3.1 putative membrane protein compare
Pf6N2E2_5646 -1.4 -1.6 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2706 -1.4 -2.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2176 -1.3 -1.8 Amidases related to nicotinamidase compare
Pf6N2E2_5671 -1.3 -2.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4601 -1.3 -1.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3782 -1.3 -2.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2424 -1.3 -2.5 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_142 -1.3 -3.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5337 -1.3 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3199 -1.3 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_3763 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_6063 -1.3 -4.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3829 -1.3 -3.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3844 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_3908 -1.3 -4.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3792 -1.3 -4.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3941 -1.3 -2.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2970 -1.3 -2.6 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_2022 -1.3 -3.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2218 -1.3 -2.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3253 -1.2 -3.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2156 -1.2 -2.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_4159 -1.2 -2.3 Cytochrome c4 compare
Pf6N2E2_1673 -1.2 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4987 -1.2 -1.1 MaoC-like domain protein compare
Pf6N2E2_2127 -1.2 -2.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2472 -1.2 -3.0 hypothetical protein compare
Pf6N2E2_3325 -1.2 -1.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_3461 -1.2 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1784 -1.2 -1.8 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2413 -1.2 -1.4 FIG074102: hypothetical protein compare
Pf6N2E2_3079 -1.2 -5.3 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_2264 -1.2 -2.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4365 -1.2 -4.3 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_2825 -1.2 -2.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_6100 -1.2 -1.7 tRNA-Val-TAC compare
Pf6N2E2_2045 -1.2 -2.5 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_2313 -1.2 -2.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2418 -1.2 -2.2 DNA-binding response regulator, LuxR family compare
Pf6N2E2_919 -1.2 -1.1 FIG00954373: hypothetical protein compare
Pf6N2E2_2124 -1.1 -1.4 Mg(2+) transport ATPase protein C compare
Pf6N2E2_1696 -1.1 -2.3 Alkanesulfonates-binding protein compare
Pf6N2E2_6022 -1.1 -2.2 StbE replicon stabilization toxin compare
Pf6N2E2_3460 -1.1 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3455 -1.1 -1.5 Integral membrane protein YfiB compare
Pf6N2E2_2323 -1.1 -1.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_156 -1.1 -1.5 Carbon storage regulator compare
Pf6N2E2_1932 -1.1 -3.1 Transcriptional regulator, IclR family compare
Pf6N2E2_4607 -1.1 -1.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_2274 -1.1 -3.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5720 -1.1 -5.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4146 -1.1 -1.3 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3258 -1.1 -2.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2973 -1.1 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4352 -1.1 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4451 -1.1 -2.9 FIG139438: lipoprotein B compare
Pf6N2E2_5523 -1.1 -3.0 Small-conductance mechanosensitive channel compare
Pf6N2E2_1083 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_2261 -1.1 -3.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_2189 -1.1 -3.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3635 -1.1 -2.4 FIG00953138: hypothetical protein compare
Pf6N2E2_479 -1.1 -2.8 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_5320 -1.1 -4.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5219 -1.1 -4.2 FIG140336: TPR domain protein compare
Pf6N2E2_5640 -1.1 -1.2 FIG00955597: hypothetical protein compare
Pf6N2E2_5527 -1.0 -1.5 Cold shock protein CspC compare
Pf6N2E2_4703 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_5261 -1.0 -0.9 FIG00956983: hypothetical protein compare
Pf6N2E2_2425 -1.0 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_922 -1.0 -2.4 FIG00794167: hypothetical protein compare
Pf6N2E2_4417 -1.0 -1.7 Protein of unknown function DUF484 compare
Pf6N2E2_2071 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_1099 -1.0 -1.1 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_4317 -1.0 -1.6 FIG00964469: hypothetical protein compare
Pf6N2E2_5178 -1.0 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5312 -1.0 -1.5 FIG00964214: hypothetical protein compare
Pf6N2E2_4743 -1.0 -0.8 hypothetical protein compare
Pf6N2E2_563 -1.0 -4.7 Serine transporter compare
Pf6N2E2_229 -1.0 -2.1 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_28 -1.0 -2.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_1966 -1.0 -1.9 SAM-dependent methyltransferases compare
Pf6N2E2_2985 -1.0 -2.2 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_5666 -1.0 -4.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5748 -1.0 -1.4 Transcriptional activator protein LuxR compare
Pf6N2E2_5088 -1.0 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1207 -1.0 -2.0 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_3834 -1.0 -4.0 Lipoprotein NlpD compare
Pf6N2E2_5665 -1.0 -5.2 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3770 -1.0 -1.4 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3300 -1.0 -2.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_6061 -1.0 -4.4 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_640 -1.0 -2.2 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_2278 -1.0 -6.6 Transcription-repair coupling factor compare
Pf6N2E2_3040 -1.0 -3.0 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_5392 -1.0 -2.4 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_1796 -1.0 -2.0 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2574 -0.9 -0.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_5536 -0.9 -1.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4599 -0.9 -2.3 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3690 -0.9 -3.8 Na(+)/H(+) antiporter compare
Pf6N2E2_6060 -0.9 -2.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_4153 -0.9 -0.8 Sensory box histidine kinase compare
Pf6N2E2_5703 -0.9 -2.8 outer membrane protein H1 compare
Pf6N2E2_3074 -0.9 -1.0 FIG00960973: hypothetical protein compare
Pf6N2E2_5544 -0.9 -3.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2480 -0.9 -1.0 FIG00957636: hypothetical protein compare
Pf6N2E2_449 -0.9 -1.7 Lactoylglutathione lyase (EC 4.4.1.5) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments