Experiment set6IT060 for Pseudomonas fluorescens FW300-N2E3

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Minimal media pH7

200 most important genes:

  gene name fitness t score description  
AO353_12070 -4.4 -6.1 imidazoleglycerol-phosphate dehydratase compare
AO353_02070 -4.4 -6.0 prephenate dehydratase compare
AO353_05115 -4.3 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07220 -4.2 -8.5 anthranilate synthase compare
AO353_07210 -4.2 -5.7 indole-3-glycerol-phosphate synthase compare
AO353_20665 -4.1 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12515 -4.0 -20.4 glutamate synthase compare
AO353_08185 -4.0 -9.7 methionine biosynthesis protein MetW compare
AO353_07155 -4.0 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07230 -3.9 -15.8 anthranilate synthase compare
AO353_14505 -3.9 -11.5 ketol-acid reductoisomerase compare
AO353_20635 -3.9 -13.4 3-isopropylmalate dehydrogenase compare
AO353_10710 -3.9 -5.3 tryptophan synthase subunit beta compare
AO353_20620 -3.8 -7.3 isopropylmalate isomerase compare
AO353_12075 -3.8 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_09000 -3.8 -4.5 argininosuccinate lyase compare
AO353_07215 -3.8 -7.6 anthranilate phosphoribosyltransferase compare
AO353_12520 -3.8 -12.3 glutamate synthase compare
AO353_10670 -3.7 -7.9 shikimate dehydrogenase compare
AO353_20625 -3.7 -5.0 3-isopropylmalate dehydratase compare
AO353_13070 -3.6 -8.8 phosphoserine phosphatase compare
AO353_13165 -3.6 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08475 -3.6 -10.1 phosphoserine phosphatase compare
AO353_08165 -3.6 -2.5 pyrroline-5-carboxylate reductase compare
AO353_02075 -3.6 -12.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_05420 -3.6 -2.4 peptide chain release factor 3 compare
AO353_08685 -3.5 -9.1 N-acetylglutamate synthase compare
AO353_00310 -3.5 -11.0 transaldolase compare
AO353_20695 -3.5 -7.5 O-succinylhomoserine sulfhydrylase compare
AO353_20540 -3.4 -8.6 aromatic amino acid aminotransferase compare
AO353_12365 -3.4 -4.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_10025 -3.4 -15.5 pyruvate carboxylase subunit B compare
AO353_14500 -3.4 -6.8 acetolactate synthase 3 regulatory subunit compare
AO353_08180 -3.3 -14.4 homoserine O-acetyltransferase compare
AO353_03360 -3.3 -9.9 glucose-6-phosphate dehydrogenase compare
AO353_05110 -3.3 -12.1 histidinol dehydrogenase compare
AO353_08345 -3.3 -9.8 dihydroxy-acid dehydratase compare
AO353_19060 -3.3 -5.4 CysB family transcriptional regulator compare
AO353_14400 -3.3 -4.9 Fis family transcriptional regulator compare
AO353_14495 -3.2 -11.9 acetolactate synthase 3 catalytic subunit compare
AO353_07525 -3.2 -15.1 biotin synthase compare
AO353_12360 -3.2 -9.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_02975 -3.2 -4.3 aspartate kinase compare
AO353_09240 -3.2 -3.1 acetylglutamate kinase compare
AO353_08015 -3.1 -8.0 5,10-methylenetetrahydrofolate reductase compare
AO353_12085 -3.1 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14115 -3.1 -7.1 gamma-glutamyl kinase compare
AO353_10030 -3.0 -12.0 pyruvate carboxylase subunit A compare
AO353_12115 -3.0 -2.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_16940 -3.0 -6.2 deoxycytidine triphosphate deaminase compare
AO353_15925 -2.9 -12.4 2-isopropylmalate synthase compare
AO353_09285 -2.9 -11.7 reactive intermediate/imine deaminase compare
AO353_02710 -2.9 -14.6 (p)ppGpp synthetase compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_05080 -2.8 -12.2 sulfate adenylyltransferase compare
AO353_00430 -2.8 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_01375 -2.8 -6.6 phosphate acyltransferase compare
AO353_10035 -2.8 -7.3 LysR family transcriptional regulator compare
AO353_04155 -2.8 -12.8 ornithine carbamoyltransferase compare
AO353_07505 -2.7 -10.0 dethiobiotin synthetase compare
AO353_07515 -2.6 -3.1 transporter compare
AO353_10705 -2.6 -5.3 tryptophan synthase subunit alpha compare
AO353_06495 -2.6 -6.7 gamma-glutamyl phosphate reductase compare
AO353_07520 -2.6 -13.5 8-amino-7-oxononanoate synthase compare
AO353_00825 -2.6 -4.9 porin compare
AO353_02250 -2.6 -4.6 chorismate synthase compare
AO353_08045 -2.6 -14.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_04105 -2.6 -10.3 argininosuccinate synthase compare
AO353_05690 -2.6 -5.1 SsrA-binding protein compare
AO353_09890 -2.5 -6.5 phosphate ABC transporter ATP-binding protein compare
AO353_07355 -2.5 -7.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03020 -2.5 -9.2 arginine N-succinyltransferase compare
AO353_07510 -2.5 -10.9 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08510 -2.4 -5.8 3-phosphoglycerate dehydrogenase compare
AO353_27650 -2.4 -5.8 cell division protein FtsK compare
AO353_05105 -2.4 -8.7 histidinol-phosphate aminotransferase compare
AO353_14370 -2.4 -7.8 glucose-6-phosphate isomerase compare
AO353_03100 -2.4 -3.2 XRE family transcriptional regulator compare
AO353_03615 -2.4 -4.3 cold-shock protein compare
AO353_20175 -2.4 -4.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_16425 -2.4 -2.6 Fe-S metabolism protein SufE compare
AO353_08780 -2.3 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_22800 -2.3 -3.7 sulfite reductase compare
AO353_03420 -2.3 -6.5 phosphogluconate dehydratase compare
AO353_18960 -2.2 -3.0 terminase compare
AO353_09040 -2.2 -2.8 diaminopimelate epimerase compare
AO353_02685 -2.2 -4.1 phosphoribosylglycinamide formyltransferase compare
AO353_20170 -2.1 -5.4 trigger factor compare
AO353_13140 -2.1 -6.9 tRNA dimethylallyltransferase compare
AO353_05075 -2.1 -10.0 adenylylsulfate kinase compare
AO353_14420 -2.0 -5.7 molecular chaperone DnaK compare
AO353_02720 -2.0 -6.6 cysteine synthase compare
AO353_08885 -2.0 -12.0 polyphosphate kinase compare
AO353_18325 -1.9 -3.5 hypothetical protein compare
AO353_03580 -1.9 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_04175 -1.9 -5.7 glycerol uptake facilitator GlpF compare
AO353_06795 -1.9 -2.4 Isochorismatase compare
AO353_00490 -1.8 -2.0 PasA protein compare
AO353_10455 -1.8 -2.4 tRNA modification GTPase MnmE compare
AO353_12105 -1.7 -6.4 peptidase S41 compare
AO353_03590 -1.7 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_11850 -1.6 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_26045 -1.6 -2.1 hypothetical protein compare
AO353_06050 -1.6 -6.8 exodeoxyribonuclease V subunit gamma compare
AO353_13605 -1.6 -6.9 oxidoreductase compare
AO353_09690 -1.5 -3.1 hypothetical protein compare
AO353_03015 -1.5 -3.6 arginine N-succinyltransferase compare
AO353_04355 -1.5 -2.6 homoserine dehydrogenase compare
AO353_13100 -1.5 -1.7 GTPase RsgA compare
AO353_00750 -1.5 -3.8 GntR family transcriptional regulator compare
AO353_03710 -1.5 -2.7 formyltetrahydrofolate deformylase compare
AO353_14775 -1.5 -5.5 hypothetical protein compare
AO353_17175 -1.5 -2.4 beta-ketoadipyl CoA thiolase compare
AO353_20410 -1.5 -2.5 hypothetical protein compare
AO353_03000 -1.5 -3.3 topoisomerase II compare
AO353_13590 -1.5 -4.4 cobalt-precorrin-6X reductase compare
AO353_10950 -1.5 -7.8 thiol:disulfide interchange protein compare
AO353_06040 -1.5 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_05150 -1.4 -4.4 ABC transporter ATP-binding protein compare
AO353_10495 -1.4 -3.7 serine hydroxymethyltransferase compare
AO353_12015 -1.4 -2.2 antitoxin compare
AO353_28815 -1.4 -2.2 hypothetical protein compare
AO353_15905 -1.4 -5.7 outer membrane protein assembly factor BamB compare
AO353_21625 -1.4 -2.3 Fe/S biogenesis protein NfuA compare
AO353_10730 -1.4 -1.7 hypothetical protein compare
AO353_13925 -1.4 -2.7 XRE family transcriptional regulator compare
AO353_11770 -1.4 -2.1 molecular chaperone Hsp33 compare
AO353_14595 -1.4 -6.3 carbonate dehydratase compare
AO353_10040 -1.4 -7.0 transcriptional regulator compare
AO353_24130 -1.4 -2.3 hypothetical protein compare
AO353_00330 -1.3 -6.8 hypothetical protein compare
AO353_03425 -1.3 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03715 -1.3 -2.5 H-NS histone compare
AO353_05130 -1.3 -1.9 anti-anti-sigma factor compare
AO353_02060 -1.3 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_16450 -1.3 -7.3 protein-PII uridylyltransferase compare
AO353_05145 -1.3 -4.2 ABC transporter permease compare
AO353_22810 -1.3 -1.4 hypothetical protein compare
AO353_03670 -1.2 -4.4 ornithine acetyltransferase compare
AO353_06045 -1.2 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_00460 -1.2 -2.3 TetR family transcriptional regulator compare
AO353_06325 -1.2 -3.3 hypothetical protein compare
AO353_16440 -1.2 -2.7 ArsC family transcriptional regulator compare
AO353_02620 -1.2 -4.3 threonine-phosphate decarboxylase compare
AO353_12510 -1.2 -6.4 cell division protein compare
AO353_13245 -1.2 -6.0 hypothetical protein compare
AO353_03775 -1.2 -5.0 pyruvate kinase compare
AO353_08350 -1.2 -4.9 hypothetical protein compare
AO353_13640 -1.2 -3.3 histidine kinase compare
AO353_03430 -1.2 -2.9 methylglyoxal synthase compare
AO353_06455 -1.2 -2.5 D-alanyl-D-alanine carboxypeptidase compare
AO353_13155 -1.2 -3.6 hypothetical protein compare
AO353_21665 -1.2 -4.0 magnesium chelatase compare
AO353_22105 -1.2 -3.5 nitrate reductase compare
AO353_28960 -1.2 -2.4 Fis family transcriptional regulator compare
AO353_20185 -1.2 -4.6 DNA-binding protein compare
AO353_03415 -1.2 -4.4 glucokinase compare
AO353_21630 -1.2 -2.7 precorrin-4 C11-methyltransferase compare
AO353_12420 -1.2 -2.9 predicted FeS cluster maintenance protein (from data) compare
AO353_03245 -1.1 -5.0 permease DsdX compare
AO353_02810 -1.1 -4.8 histidine kinase compare
AO353_14220 -1.1 -1.0 ribosomal large subunit pseudouridine synthase D compare
AO353_16805 -1.1 -4.6 recombinase RecA compare
AO353_20200 -1.1 -2.7 peptidylprolyl isomerase compare
AO353_14405 -1.1 -6.6 ATPase compare
AO353_12145 -1.1 -2.7 nitrogen regulation protein NR(I) compare
AO353_09475 -1.1 -2.3 hypothetical protein compare
AO353_10945 -1.1 -2.3 cytochrome C compare
AO353_23495 -1.1 -2.3 SAM-dependent methyltransferase compare
AO353_05135 -1.1 -5.3 toluene tolerance protein compare
AO353_13610 -1.1 -2.2 precorrin isomerase compare
AO353_08880 -1.1 -2.0 exopolyphosphatase compare
AO353_00515 -1.1 -2.0 hypothetical protein compare
AO353_16835 -1.1 -2.2 LuxR family transcriptional regulator compare
AO353_03830 -1.1 -1.6 antibiotic biosynthesis monooxygenase compare
AO353_10780 -1.0 -0.9 DNA-binding protein compare
AO353_11340 -1.0 -1.1 MarR family transcriptional regulator compare
AO353_00505 -1.0 -3.3 3-ketoacyl-CoA thiolase compare
AO353_17640 -1.0 -2.1 serine peptidase compare
AO353_09905 -1.0 -5.5 phosphate-binding protein compare
AO353_07075 -1.0 -3.4 elongation factor Tu compare
AO353_26645 -1.0 -2.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_15395 -1.0 -3.2 transcriptional regulator compare
AO353_11730 -1.0 -5.9 glutamate--cysteine ligase compare
AO353_14040 -1.0 -3.3 chorismate mutase compare
AO353_17445 -1.0 -2.3 hypothetical protein compare
AO353_01780 -1.0 -5.8 heat-shock protein Hsp90 compare
AO353_04180 -1.0 -4.9 glycerol kinase compare
AO353_02595 -1.0 -1.6 cobalamin synthase compare
AO353_19145 -1.0 -3.0 protease HtpX compare
AO353_13620 -1.0 -5.6 precorrin-3B C17-methyltransferase compare
AO353_00105 -1.0 -1.6 hypothetical protein compare
AO353_12150 -1.0 -3.1 histidine kinase compare
AO353_03630 -1.0 -6.1 porin compare
AO353_16040 -1.0 -1.8 hypothetical protein compare
AO353_20630 -1.0 -4.7 SAM-dependent methyltransferase compare
AO353_04055 -1.0 -1.3 methionine--tRNA ligase compare
AO353_10985 -1.0 -2.0 hypothetical protein compare
AO353_17965 -1.0 -3.2 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment