Experiment set6IT060 for Rhodospirillum rubrum S1H

Compare to:

Succinic Acid; Light intensity 18 uM

200 most important genes:

  gene name fitness t score description  
Rru_A2144 -5.2 -1.2 hypothetical protein (RefSeq) compare
Rru_A2888 -4.5 -3.0 hypothetical protein (NCBI) compare
Rru_A3277 -4.3 -4.5 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A0212 -4.2 -1.6 hypothetical protein (NCBI) compare
Rru_A1439 -4.2 -1.0 Putative FecR (NCBI) compare
Rru_A3139 -3.8 -5.9 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A1190 -3.7 -0.9 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A3221 -3.5 -1.9 hypothetical protein (NCBI) compare
Rru_A0615 -3.4 -2.8 photosynthetic complex assembly protein (NCBI) compare
Rru_A2983 -3.4 -0.9 Polyprenyl synthetase (NCBI) compare
Rru_A3425 -3.1 -4.8 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A0621 -3.1 -15.8 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A1896 -3.1 -8.5 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A3214 -3.1 -10.8 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A3428 -3.1 -14.7 Tryptophan synthase (NCBI) compare
Rru_B0050 -3.0 -2.0 dTDP-glucose 4,6-dehydratase (NCBI) compare
Rru_A3227 -3.0 -6.8 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A1319 -3.0 -1.5 Triphosphoribosyl-dephospho-CoA synthase (NCBI) compare
Rru_A3190 -3.0 -6.7 Aspartate carbamoyltransferase (NCBI) compare
Rru_A2224 -3.0 -3.0 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A3548 -3.0 -9.3 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A1928 -2.9 -11.6 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A2343 -2.9 -3.1 Protein of unknown function DUF83 (NCBI) compare
Rru_A0670 -2.9 -1.1 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A2886 -2.8 -21.1 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A3427 -2.8 -16.6 Tryptophan synthase, beta chain (NCBI) compare
Rru_A1530 -2.8 -12.9 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A1593 -2.8 -5.3 Peptidase M50, putative membrane-associated zinc metallopeptidase (NCBI) compare
Rru_A2421 -2.7 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A2974 -2.7 -6.4 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A0397 -2.7 -6.8 Argininosuccinate lyase (NCBI) compare
Rru_A0625 -2.7 -1.0 hypothetical protein (NCBI) compare
Rru_A0469 -2.7 -10.1 Ketol-acid reductoisomerase (NCBI) compare
Rru_B0022 -2.6 -0.8 Resolvase-like (NCBI) compare
Rru_A3640 -2.6 -1.1 Ham1-like protein (NCBI) compare
Rru_A0639 -2.6 -2.6 Regulatory protein RecX (NCBI) compare
Rru_A2403 -2.6 -12.3 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A1786 -2.6 -16.8 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A2772 -2.5 -1.0 ATP phosphoribosyltransferase (NCBI) compare
Rru_A3162 -2.5 -9.1 Prephenate dehydratase (NCBI) compare
Rru_A2400 -2.5 -9.7 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A0617 -2.5 -1.9 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A2091 -2.4 -3.4 hypothetical protein (NCBI) compare
Rru_A0180 -2.4 -0.9 hypothetical protein (NCBI) compare
Rru_A2766 -2.4 -2.6 Protein of unknown function DUF329 (NCBI) compare
Rru_A2574 -2.4 -1.3 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A1164 -2.4 -0.7 Peptidase M52, hydrogenase expression/formation protein (NCBI) compare
Rru_A2020 -2.4 -1.7 Plasmid maintenance system killer (NCBI) compare
Rru_A1189 -2.4 -7.6 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A0467 -2.3 -10.0 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A2197 -2.3 -3.3 3,4-Dihydroxy-2-butanone 4-phosphate synthase (NCBI) compare
Rru_A1867 -2.3 -2.6 Protein of unknown function DUF583 (NCBI) compare
Rru_A3751 -2.3 -10.2 Argininosuccinate synthase (NCBI) compare
Rru_A2193 -2.3 -7.4 Abc1 protein (NCBI) compare
Rru_A3701 -2.3 -5.9 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A1895 -2.3 -1.8 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A3191 -2.3 -11.0 Dihydroorotase multifunctional complex type (NCBI) compare
Rru_A2927 -2.3 -5.5 Acriflavin resistance protein (NCBI) compare
Rru_A3550 -2.2 -2.4 Cobyric acid synthase CobQ (NCBI) compare
Rru_A0151 -2.2 -3.7 hypothetical protein (NCBI) compare
Rru_A2771 -2.2 -3.9 Histidinol dehydrogenase (NCBI) compare
Rru_A2510 -2.2 -0.7 hypothetical protein (NCBI) compare
Rru_A2979 -2.2 -5.4 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A2928 -2.2 -1.6 Secretion protein HlyD (NCBI) compare
Rru_A2018 -2.2 -0.4 hypothetical protein (NCBI) compare
Rru_A0624 -2.2 -6.6 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A1112 -2.2 -0.4 hypothetical protein (NCBI) compare
Rru_A3267 -2.2 -6.3 Methionine biosynthesis MetW (NCBI) compare
Rru_A1179 -2.2 -0.6 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2975 -2.2 -7.8 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A2404 -2.2 -7.1 Phosphoribulokinase (NCBI) compare
Rru_A3285 -2.1 -1.0 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A3594 -2.1 -1.0 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A2099 -2.1 -4.4 surface antigen (NCBI) compare
Rru_A0613 -2.1 -2.2 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A2545 -2.1 -2.1 hypothetical protein (NCBI) compare
Rru_A0485 -2.1 -3.2 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1897 -2.1 -2.0 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A0096 -2.1 -2.8 Secretion protein HlyD (NCBI) compare
Rru_A1737 -2.0 -3.6 hypothetical protein (NCBI) compare
Rru_A1950 -2.0 -1.2 Transcriptional regulator, ModE family (NCBI) compare
Rru_A3215 -2.0 -2.7 hypothetical protein (NCBI) compare
Rru_A0620 -2.0 -4.3 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A0514 -2.0 -5.1 Dihydroorotate dehydrogenase 2 (NCBI) compare
Rru_A1274 -2.0 -2.3 Radical SAM (NCBI) compare
Rru_A2500 -1.9 -2.0 Rhodanese-like (NCBI) compare
Rru_A3276 -1.9 -2.9 Ornithine carbamoyltransferase (NCBI) compare
Rru_A3264 -1.9 -5.1 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3195 -1.9 -3.3 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A3266 -1.9 -7.8 Homoserine O-acetyltransferase (NCBI) compare
Rru_A2978 -1.9 -6.2 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A1310 -1.9 -2.8 Acetyl-CoA C-acyltransferase (NCBI) compare
Rru_A0622 -1.9 -5.3 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A0398 -1.9 -2.1 Thiol-disulfide isomerase and thioredoxins-like (NCBI) compare
Rru_A2986 -1.9 -3.0 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A1305 -1.9 -0.6 Predicted transcriptional regulator (NCBI) compare
Rru_A2272 -1.8 -6.1 TspO and MBR related proteins (NCBI) compare
Rru_A2449 -1.8 -3.1 hypothetical protein (NCBI) compare
Rru_A1105 -1.8 -2.2 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A1064 -1.8 -2.2 Plasmid maintenance system killer (NCBI) compare
Rru_A0961 -1.8 -2.6 hypothetical protein (NCBI) compare
Rru_A2987 -1.8 -1.7 hypothetical protein (NCBI) compare
Rru_A0394 -1.8 -1.9 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A3362 -1.8 -2.1 Uroporphyrin-III C-methyltransferase-like (NCBI) compare
Rru_A2478 -1.8 -3.9 ArgK protein (NCBI) compare
Rru_A2346 -1.8 -2.1 hypothetical protein (NCBI) compare
Rru_A1236 -1.8 -1.5 Iojap-related protein (NCBI) compare
Rru_A0509 -1.8 -1.6 hypothetical protein (NCBI) compare
Rru_A3149 -1.8 -1.5 Protein of unknown function DUF214 (NCBI) compare
Rru_A0495 -1.8 -2.3 hypothetical protein (NCBI) compare
Rru_A0836 -1.8 -3.8 hypothetical protein (NCBI) compare
Rru_A3384 -1.8 -1.7 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3282 -1.7 -2.9 hypothetical protein (NCBI) compare
Rru_A1308 -1.7 -5.4 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A1111 -1.7 -5.3 Pseudouridine synthase, RluD (NCBI) compare
Rru_A0776 -1.7 -2.7 Aspartate/tyrosine/aromatic aminotransferase (NCBI) compare
Rru_A1883 -1.7 -2.4 Magnesium and cobalt transport protein CorA (NCBI) compare
Rru_A1611 -1.7 -1.2 Cobalamin synthesis protein/P47K (NCBI) compare
Rru_A0494 -1.7 -4.6 Squalene/phytoene synthase (NCBI) compare
Rru_A2183 -1.7 -4.9 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A2512 -1.7 -2.5 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A3549 -1.7 -4.4 Cobyric acid synthase CobQ (NCBI) compare
Rru_A3150 -1.7 -3.2 ABC transporter component (NCBI) compare
Rru_A0302 -1.7 -2.8 Hydrogenase accessory protein HypB (NCBI) compare
Rru_A1048 -1.7 -0.6 Protein of unknown function DUF465 (NCBI) compare
Rru_A0029 -1.7 -2.5 hypothetical protein (NCBI) compare
Rru_A1827 -1.6 -7.0 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A1025 -1.6 -5.2 Rare lipoprotein A (NCBI) compare
Rru_A0181 -1.6 -1.7 hypothetical protein (NCBI) compare
Rru_A1353 -1.6 -2.1 hypothetical protein (NCBI) compare
Rru_A0412 -1.6 -1.7 hypothetical protein (NCBI) compare
Rru_A2524 -1.6 -5.9 Peptidase U32 (NCBI) compare
Rru_A2549 -1.6 -2.1 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A2181 -1.6 -8.4 NAD(P) transhydrogenase, beta subunit (NCBI) compare
Rru_A2988 -1.6 -1.1 Precorrin-6X reductase (NCBI) compare
Rru_A0227 -1.6 -1.8 hypothetical protein (NCBI) compare
Rru_A2828 -1.6 -2.2 hypothetical protein (NCBI) compare
Rru_A1321 -1.6 -1.8 Biotin--acetyl-CoA-carboxylase ligase (NCBI) compare
Rru_A1525 -1.6 -2.9 Nucleoside diphosphate pyrophosphatase (NCBI) compare
Rru_A0585 -1.6 -2.0 ABC transporter component (NCBI) compare
Rru_A1309 -1.5 -2.1 acetoacetyl-CoA reductase (NCBI) compare
Rru_A2401 -1.5 -3.0 RuBisCO transcriptional regulator cbbR, LysR family (NCBI) compare
Rru_A3009 -1.5 -2.1 Aminotransferase class-III (NCBI) compare
Rru_A2057 -1.5 -0.2 Molybdopterin-guanine dinucleotide biosynthesis MobB region (NCBI) compare
Rru_A1359 -1.5 -3.5 Ribose/galactose isomerase (NCBI) compare
Rru_A0486 -1.5 -2.9 von Willebrand factor, type A (NCBI) compare
Rru_A2989 -1.5 -0.9 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A1730 -1.5 -1.5 nuclease (NCBI) compare
Rru_A1432 -1.5 -5.0 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A1208 -1.5 -3.8 AFG1-like ATPase (NCBI) compare
Rru_A3165 -1.5 -3.2 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A2929 -1.5 -2.0 Two component Transcriptional regulator, Winged helix family (NCBI) compare
Rru_A2926 -1.5 -2.2 RND efflux system, outer membrane lipoprotein, NodT (NCBI) compare
Rru_A0618 -1.5 -5.7 PUCC protein (NCBI) compare
Rru_A0668 -1.5 -0.9 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A0721 -1.5 -3.0 Anti-Sigm factor, ChrR (NCBI) compare
Rru_A2885 -1.5 -5.2 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A1387 -1.4 -3.2 hypothetical protein (NCBI) compare
Rru_A0812 -1.4 -2.8 no description compare
Rru_A3399 -1.4 -2.3 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A2330 -1.4 -2.7 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A1191 -1.4 -5.2 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A2507 -1.4 -6.5 Orotate phosphoribosyl transferase (NCBI) compare
Rru_A3696 -1.4 -3.1 Exodeoxyribonuclease III xth (NCBI) compare
Rru_A1168 -1.4 -1.1 Hydrogenase expression/synthesis, HypA (NCBI) compare
Rru_A3080 -1.4 -2.3 hypothetical protein (NCBI) compare
Rru_B0005 -1.4 -0.2 Glycosyl transferase (NCBI) compare
Rru_A1523 -1.4 -1.9 Hemerythrin (NCBI) compare
Rru_A3693 -1.4 -1.3 Protein of unknown function UPF0011 (NCBI) compare
Rru_A2167 -1.4 -2.7 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A0660 -1.4 -2.7 Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) compare
Rru_A2980 -1.4 -4.6 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A1675 -1.4 -4.3 Cytochrome c assembly protein (NCBI) compare
Rru_A3424 -1.3 -1.5 Orotidine-5'-phosphate decarboxylase (NCBI) compare
Rru_A2958 -1.3 -2.3 no description compare
Rru_A1933 -1.3 -0.9 Uroporphyrin-III C-methyltransferase (NCBI) compare
Rru_A2982 -1.3 -2.1 O-methyltransferase, family 2 (NCBI) compare
Rru_A2332 -1.3 -2.1 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A0525 -1.3 -3.9 Two component Transcriptional regulator, Winged helix family (NCBI) compare
Rru_A2717 -1.3 -3.7 Isochorismatase hydrolase (NCBI) compare
Rru_A2951 -1.3 -0.5 hypothetical protein (NCBI) compare
Rru_A2552 -1.3 -1.3 hypothetical protein (NCBI) compare
Rru_A0788 -1.3 -2.0 ABC transporter component (NCBI) compare
Rru_A0278 -1.3 -1.9 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A0628 -1.3 -2.9 PUCC protein (NCBI) compare
Rru_A2595 -1.3 -1.5 hypothetical protein (NCBI) compare
Rru_A0627 -1.3 -3.6 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A3341 -1.3 -0.9 Acetylglutamate kinase (NCBI) compare
Rru_A2198 -1.3 -1.2 Protein of unknown function UPF0066 (NCBI) compare
Rru_A3154 -1.2 -3.8 hypothetical protein (NCBI) compare
Rru_A0237 -1.2 -1.8 Protein of unknown function DUF190 (NCBI) compare
Rru_A0187 -1.2 -1.7 hypothetical protein (NCBI) compare
Rru_A3371 -1.2 -2.3 Zinc-containing alcohol dehydrogenase superfamily (NCBI) compare
Rru_A1999 -1.2 -1.4 hypothetical protein (NCBI) compare
Rru_A1678 -1.2 -1.2 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) compare
Rru_A2963 -1.2 -1.3 hypothetical protein (NCBI) compare
Rru_A3235 -1.2 -3.7 Secretion protein HlyD (NCBI) compare
Rru_A0714 -1.2 -1.7 Protein of unknown function DUF1476 (NCBI) compare
Rru_A2215 -1.2 -2.2 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A3194 -1.2 -3.0 SMF protein (NCBI) compare


Specific Phenotypes

For 3 genes in this experiment

For light Succinic Acid in Rhodospirillum rubrum S1H

For light Succinic Acid across organisms