Experiment set6IT059 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Urea nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO356_01630 +3.5 9.3 anti-sigma factor compare
AO356_27280 +2.6 3.4 XRE family transcriptional regulator compare
AO356_04570 +2.6 13.2 RNA polymerase subunit sigma compare
AO356_11610 +2.5 4.1 glycerol acyltransferase compare
AO356_08340 +2.5 17.5 branched-chain amino acid ABC transporter substrate-binding protein compare
AO356_16890 +2.2 12.2 hypothetical protein compare
AO356_18130 +2.1 13.0 copper resistance protein CopC compare
AO356_12515 +2.1 9.9 exodeoxyribonuclease III compare
AO356_18140 +2.1 18.0 copper oxidase compare
AO356_18125 +2.0 12.9 copper resistance protein CopD compare
AO356_20350 +2.0 1.3 translation initiation factor 2 compare
AO356_08345 +2.0 10.6 urea ABC transporter permease compare
AO356_07020 +2.0 2.9 LPS export ABC transporter periplasmic protein LptC compare
AO356_02215 +1.8 7.8 transcriptional regulator compare
AO356_18135 +1.8 8.5 copper resistance protein CopB compare
AO356_08355 +1.6 5.4 ABC transporter ATP-binding protein compare
AO356_08360 +1.6 4.6 ABC transporter ATP-binding protein compare
AO356_02220 +1.6 4.0 ATPase compare
AO356_08350 +1.5 7.2 urea ABC transporter permease subunit UrtC compare
AO356_03065 +1.5 2.5 AAA family ATPase compare
AO356_25990 +1.4 1.6 hypothetical protein compare
AO356_16435 +1.4 1.9 hypothetical protein compare
AO356_24845 +1.3 3.0 ATPase compare
AO356_07110 +1.3 6.9 ribonuclease G compare
AO356_00130 +1.2 3.5 XRE family transcriptional regulator compare
AO356_03855 +1.2 9.5 AAA family ATPase compare
AO356_16820 +1.2 1.5 IclR family transcriptional regulator compare
AO356_09560 +1.2 8.9 glucosyltransferase MdoH compare
AO356_02905 +1.1 8.5 amino acid ABC transporter substrate-binding protein compare
AO356_09565 +1.1 7.4 glucan biosynthesis protein G compare
AO356_12500 +1.1 8.1 ribonuclease PH compare
AO356_07855 +1.1 7.7 hypothetical protein compare
AO356_30090 +1.1 6.9 XRE family transcriptional regulator compare
AO356_00440 +1.1 2.8 peptidylprolyl isomerase compare
AO356_08985 +1.0 1.4 hypothetical protein compare
AO356_05885 +1.0 4.0 RNA polymerase sigma factor RpoS compare
AO356_22345 +1.0 2.7 potassium transporter KefC compare
AO356_13485 +1.0 1.5 chemotaxis protein CheY compare
AO356_17090 +1.0 2.0 phospholipid-binding protein compare
AO356_09150 +1.0 2.3 acyl carrier protein compare
AO356_14105 +1.0 2.8 glycine cleavage system protein R compare
AO356_01255 +1.0 7.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_08485 +1.0 6.3 ABC transporter ATP-binding protein compare
AO356_23645 +1.0 2.4 hypothetical protein compare
AO356_28710 +1.0 2.1 aldehyde dehydrogenase compare
AO356_14540 +1.0 1.8 biotin--protein ligase compare
AO356_26905 +1.0 1.9 AraC family transcriptional regulator compare
AO356_18535 +1.0 1.7 class I peptide chain release factor compare
AO356_22650 +1.0 2.1 chemotaxis protein CheD compare
AO356_01915 +1.0 1.8 hypothetical protein compare
AO356_08500 +0.9 7.9 amino acid ABC transporter substrate-binding protein compare
AO356_21575 +0.9 2.5 GTP pyrophosphokinase compare
AO356_27390 +0.9 2.1 ATPase compare
AO356_10450 +0.9 1.9 hypothetical protein compare
AO356_19425 +0.9 1.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_09940 +0.9 1.6 hypothetical protein compare
AO356_12945 +0.9 2.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_11055 +0.9 3.2 long-chain acyl-CoA thioester hydrolase compare
AO356_06980 +0.9 2.7 BolA family transcriptional regulator compare
AO356_06715 +0.9 2.0 hypothetical protein compare
AO356_21790 +0.9 2.3 sulfonate ABC transporter ATP-binding protein compare
AO356_08495 +0.9 7.5 branched-chain amino acid transporter permease subunit LivH compare
AO356_28160 +0.9 2.5 hypothetical protein compare
AO356_29730 +0.9 1.7 MarR family transcriptional regulator compare
AO356_07820 +0.9 1.3 hypothetical protein compare
AO356_20810 +0.8 1.2 oxidoreductase compare
AO356_25630 +0.8 2.1 UDP-N-acetylglucosamine 2-epimerase compare
AO356_19600 +0.8 1.1 pyruvate kinase compare
AO356_23850 +0.8 4.4 histidine kinase compare
AO356_19055 +0.8 2.4 23S rRNA methyltransferase compare
AO356_22590 +0.8 1.3 2,4-dienoyl-CoA reductase compare
AO356_23790 +0.8 1.5 cyanate hydratase compare
AO356_08490 +0.8 7.1 branched-chain amino acid ABC transporter permease compare
AO356_28610 +0.8 1.5 AraC family transcriptional regulator compare
AO356_29125 +0.8 1.3 vanillate monooxygenase compare
AO356_13710 +0.8 1.6 fructose-bisphosphate aldolase compare
AO356_15290 +0.8 2.3 gamma-glutamyl phosphate reductase compare
AO356_23540 +0.8 2.1 GntR family transcriptional regulator compare
AO356_08055 +0.7 1.9 copper resistance protein CopZ compare
AO356_12640 +0.7 1.7 cytochrome C compare
AO356_09570 +0.7 3.3 D-tyrosyl-tRNA(Tyr) deacylase compare
AO356_08000 +0.7 1.7 short-chain dehydrogenase compare
AO356_29200 +0.7 2.9 sugar ABC transporter substrate-binding protein compare
AO356_14335 +0.7 2.8 rRNA methyltransferase compare
AO356_24375 +0.7 1.8 type VI secretion protein compare
AO356_26635 +0.7 1.3 hydrolase compare
AO356_01515 +0.7 3.6 N-formylglutamate amidohydrolase compare
AO356_29695 +0.7 1.4 polysaccharide deacetylase compare
AO356_29515 +0.7 1.6 energy transducer TonB compare
AO356_07050 +0.7 3.7 glmZ(sRNA)-inactivating NTPase compare
AO356_13505 +0.7 1.7 chemotaxis protein compare
AO356_00020 +0.7 1.9 ABC transporter for D-Sorbitol, permease component 2 (from data) compare
AO356_20750 +0.7 1.4 hypothetical protein compare
AO356_15250 +0.7 2.9 nucleoside-diphosphate sugar epimerase compare
AO356_25725 +0.7 1.6 ABC transporter permease compare
AO356_19185 +0.7 1.3 MarR family transcriptional regulator compare
AO356_29485 +0.7 1.4 LysR family transcriptional regulator compare
AO356_14285 +0.7 1.4 glycerol-3-phosphate acyltransferase compare
AO356_03775 +0.7 1.2 flagellar assembly protein FliO compare
AO356_26395 +0.6 1.2 hypothetical protein compare
AO356_28050 +0.6 2.0 cytochrome c-550 PedF compare
AO356_21475 +0.6 2.1 oxidoreductase compare
AO356_08480 +0.6 4.0 ABC transporter ATP-binding protein compare
AO356_30035 +0.6 1.4 aminomethyltransferase compare
AO356_18470 +0.6 2.8 LTXXQ domain protein compare
AO356_05550 +0.6 1.6 DNA base-flipping protein YbaZ compare
AO356_02640 +0.6 1.4 type III secretion system protein PrgJ compare
AO356_19790 +0.6 5.3 TonB-dependent receptor compare
AO356_27170 +0.6 2.0 XRE family transcriptional regulator compare
AO356_28090 +0.6 1.0 ABC transporter ATP-binding protein compare
AO356_28985 +0.6 1.4 hypothetical protein compare
AO356_19765 +0.6 1.1 helicase compare
AO356_04495 +0.6 2.2 short-chain dehydrogenase compare
AO356_03830 +0.6 2.5 flagellar motor switch protein FliG compare
AO356_01170 +0.6 1.4 glycosyl transferase family 1 compare
AO356_17555 +0.6 0.9 GntR family transcriptional regulator compare
AO356_02625 +0.6 1.2 oxygen-regulated invasion protein OrgB compare
AO356_16505 +0.6 1.3 molybdopterin-synthase adenylyltransferase compare
AO356_29950 +0.6 2.6 hypothetical protein compare
AO356_18915 +0.6 2.7 flagellar biosynthesis protein FlgB compare
AO356_01000 +0.6 2.1 hypothetical protein compare
AO356_04690 +0.6 1.4 16S rRNA pseudouridine(516) synthase compare
AO356_25455 +0.6 1.7 transcriptional regulator compare
AO356_13880 +0.6 2.1 DNA-binding protein compare
AO356_21975 +0.6 1.3 antibiotic biosynthesis monooxygenase compare
AO356_01695 +0.6 1.8 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_25125 +0.6 2.3 short-chain dehydrogenase compare
AO356_03835 +0.6 2.3 flagellar M-ring protein FliF compare
AO356_10560 +0.6 4.5 ABC transporter compare
AO356_18245 +0.6 2.8 DeoR family transcriptional regulator compare
AO356_03840 +0.6 2.9 flagellar hook-basal body protein FliE compare
AO356_24510 +0.6 2.3 ACP phosphodiesterase compare
AO356_15305 +0.6 1.4 50S rRNA methyltransferase compare
AO356_19780 +0.6 3.8 histidine kinase compare
AO356_02785 +0.6 1.1 uroporphyrin-III methyltransferase compare
AO356_10570 +0.6 5.2 large adhesive protein compare
AO356_03760 +0.6 2.9 flagellar biosynthetic protein FliR compare
AO356_28450 +0.6 1.5 aldo/keto reductase compare
AO356_00490 +0.6 3.8 phospholipase compare
AO356_01485 +0.5 2.4 transcriptional regulator compare
AO356_00415 +0.5 1.6 transporter compare
AO356_15605 +0.5 2.7 guanine permease compare
AO356_28305 +0.5 2.0 coproporphyrinogen III oxidase compare
AO356_05235 +0.5 2.5 glycerol-3-phosphate ABC transporter substrate-binding protein compare
AO356_10440 +0.5 1.0 hypothetical protein compare
AO356_06115 +0.5 1.2 hypothetical protein compare
AO356_26475 +0.5 1.3 lactoylglutathione lyase compare
AO356_04485 +0.5 2.0 cupin compare
AO356_14445 +0.5 1.7 lipoate--protein ligase compare
AO356_01150 +0.5 1.7 sugar transferase compare
AO356_21905 +0.5 2.3 monooxygenase compare
AO356_24620 +0.5 1.2 glutathione S-transferase compare
AO356_27820 +0.5 1.5 hypothetical protein compare
AO356_24365 +0.5 2.4 type VI secretion system protein ImpK compare
AO356_08020 +0.5 2.1 2OG-Fe(II) oxygenase compare
AO356_28170 +0.5 0.9 hypothetical protein compare
AO356_02005 +0.5 1.3 hypothetical protein compare
AO356_12335 +0.5 1.5 ABC transporter ATP-binding protein compare
AO356_10480 +0.5 1.7 phage tail protein compare
AO356_02555 +0.5 2.2 GntR family transcriptional regulator compare
AO356_03780 +0.5 0.9 flagellar motor switch protein compare
AO356_01785 +0.5 2.4 hypothetical protein compare
AO356_23990 +0.5 1.2 amino acid ABC transporter compare
AO356_01015 +0.5 1.2 peptidylprolyl isomerase compare
AO356_06615 +0.5 0.7 FeS assembly protein IscX compare
AO356_24695 +0.5 1.3 transcriptional regulator compare
AO356_29685 +0.5 1.8 ABC transporter substrate-binding protein compare
AO356_14900 +0.5 2.0 zinc-binding protein compare
AO356_27040 +0.5 1.9 LysR family transcriptional regulator compare
AO356_04525 +0.5 2.6 hypothetical protein compare
AO356_12825 +0.5 0.9 hypothetical protein compare
AO356_07860 +0.5 3.4 hypothetical protein compare
AO356_25185 +0.5 1.8 hypothetical protein compare
AO356_27195 +0.5 3.1 hypothetical protein compare
AO356_18920 +0.5 3.1 flagellar basal-body rod protein FlgC compare
AO356_17770 +0.5 0.8 hypothetical protein compare
AO356_13475 +0.5 2.6 glutathione synthetase compare
AO356_09055 +0.5 2.2 transcriptional regulator compare
AO356_01550 +0.5 1.6 oxaloacetate decarboxylase compare
AO356_10815 +0.5 1.5 5S ribosomal RNA compare
AO356_04070 +0.5 3.1 channel protein TolC compare
AO356_25260 +0.5 0.6 iron transporter compare
AO356_07665 +0.5 1.1 hypothetical protein compare
AO356_25565 +0.5 0.8 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
AO356_17355 +0.5 1.4 hypothetical protein compare
AO356_11410 +0.5 0.7 hypothetical protein compare
AO356_25555 +0.5 2.0 transcriptional regulator compare
AO356_02670 +0.5 2.0 hypothetical protein compare
AO356_28635 +0.5 1.3 ABC transporter substrate-binding protein compare
AO356_00575 +0.5 1.3 SCP-2 family sterol carrier protein compare
AO356_08910 +0.5 1.5 carbamoyltransferase compare
AO356_18225 +0.5 2.9 amino acid ABC transporter permease compare
AO356_01120 +0.5 2.7 iron ABC transporter permease compare
AO356_25935 +0.5 1.0 polysaccharide deacetylase compare
AO356_29550 +0.5 1.2 ABC transporter permease compare
AO356_30020 +0.5 1.3 hypothetical protein compare
AO356_04180 +0.5 0.8 hypothetical protein compare
AO356_18475 +0.5 1.0 chemotaxis protein CheY compare
AO356_03815 +0.5 2.9 flagellar biogenesis protein compare
AO356_05135 +0.5 1.3 aldehyde dehydrogenase compare


Specific Phenotypes

For 18 genes in this experiment

For nitrogen source Urea in Pseudomonas fluorescens FW300-N2C3

For nitrogen source Urea across organisms