Experiment set6IT059 for Burkholderia phytofirmans PsJN

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2-Deoxy-D-ribonic acid lithium salt carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS13890 -5.7 -2.7 RpiR family transcriptional regulator compare
BPHYT_RS02985 -5.2 -2.2 MaoC family dehydratase compare
BPHYT_RS17885 -5.1 -3.5 3-dehydroquinate synthase compare
BPHYT_RS16085 -4.7 -3.0 DeoR faimly transcriptional regulator compare
BPHYT_RS15075 -4.6 -2.0 dihydrokaempferol 4-reductase compare
BPHYT_RS26525 -4.5 -1.1 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS11235 -4.5 -1.1 hypothetical protein compare
BPHYT_RS24315 -4.4 -1.9 phosphoribosyltransferase compare
BPHYT_RS09650 -4.4 -1.8 hypothetical protein compare
BPHYT_RS14845 -4.3 -2.4 cysteine synthase compare
BPHYT_RS04370 -4.2 -1.1 glycosyl transferase compare
BPHYT_RS26955 -4.1 -1.0 succinylglutamate desuccinylase compare
BPHYT_RS17240 -4.1 -1.0 cell division protein FtsW compare
BPHYT_RS08960 -4.0 -1.7 threonine synthase compare
BPHYT_RS09500 -4.0 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS12550 -4.0 -1.0 GTP-binding protein HflX compare
BPHYT_RS06530 -4.0 -1.3 membrane protein compare
BPHYT_RS17890 -3.9 -1.7 shikimate kinase compare
BPHYT_RS33805 -3.9 -1.0 hypothetical protein compare
BPHYT_RS06195 -3.8 -1.3 membrane protein compare
BPHYT_RS10345 -3.8 -1.0 flagellar motor protein MotB compare
BPHYT_RS28860 -3.8 -1.0 haloacid dehalogenase compare
BPHYT_RS25970 -3.8 -0.9 urea amidolyase compare
BPHYT_RS14895 -3.8 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS03645 -3.7 -1.9 tRNA dimethylallyltransferase compare
BPHYT_RS06610 -3.7 -1.3 triosephosphate isomerase compare
BPHYT_RS12990 -3.7 -1.9 iron transporter compare
BPHYT_RS25870 -3.7 -0.9 type III secretion system ATPase compare
BPHYT_RS00980 -3.6 -0.9 GCN5 family acetyltransferase compare
BPHYT_RS29520 -3.6 -0.9 hypothetical protein compare
BPHYT_RS10135 -3.5 -0.9 hypothetical protein compare
BPHYT_RS29920 -3.5 -0.9 hypothetical protein compare
BPHYT_RS15190 -3.5 -1.3 acyl carrier protein compare
BPHYT_RS34490 -3.5 -0.9 hypothetical protein compare
BPHYT_RS17405 -3.5 -0.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS25815 -3.4 -1.2 deoxyribose-phosphate aldolase compare
BPHYT_RS34655 -3.4 -1.2 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS31910 -3.4 -1.2 hypothetical protein compare
BPHYT_RS22910 -3.4 -0.8 hypothetical protein compare
BPHYT_RS03480 -3.3 -6.6 ferritin compare
BPHYT_RS20790 -3.2 -1.1 TetR family transcriptional regulator compare
BPHYT_RS08525 -3.2 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS13390 -3.2 -0.8 IclR family transcriptional regulator compare
BPHYT_RS13275 -3.2 -3.7 methyltransferase compare
BPHYT_RS02610 -3.2 -3.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS02570 -3.1 -4.9 phosphocarrier protein HPr compare
BPHYT_RS27655 -3.1 -1.1 potassium transporter compare
BPHYT_RS30085 -3.0 -1.1 hypothetical protein compare
BPHYT_RS09515 -3.0 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17670 -3.0 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS21330 -3.0 -1.1 hypothetical protein compare
BPHYT_RS18705 -3.0 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS23460 -3.0 -1.0 AraC family transcriptional regulator compare
BPHYT_RS05825 -2.9 -1.8 hypothetical protein compare
BPHYT_RS25800 -2.9 -1.0 sugar ABC transporter permease compare
BPHYT_RS27305 -2.9 -0.9 hypothetical protein compare
BPHYT_RS25470 -2.9 -1.0 alkylhydroperoxidase compare
BPHYT_RS31440 -2.9 -1.3 hypothetical protein compare
BPHYT_RS01590 -2.8 -6.0 methionine biosynthesis protein MetW compare
BPHYT_RS03280 -2.8 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS01240 -2.8 -1.4 hypothetical protein compare
BPHYT_RS02690 -2.8 -5.4 protoheme IX farnesyltransferase compare
BPHYT_RS16815 -2.8 -1.4 ureidoglycolate hydrolase compare
BPHYT_RS14910 -2.8 -8.0 chorismate mutase compare
BPHYT_RS11310 -2.8 -0.9 LysR family transcriptional regulator compare
BPHYT_RS09160 -2.8 -3.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS34295 -2.8 -0.7 fimbrial protein compare
BPHYT_RS22265 -2.7 -0.9 hypothetical protein compare
BPHYT_RS08850 -2.7 -1.3 transcriptional regulator compare
BPHYT_RS07480 -2.7 -0.9 FAD-dependent oxidoreductase compare
BPHYT_RS23035 -2.7 -2.0 hypothetical protein compare
BPHYT_RS23175 -2.7 -1.8 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS08615 -2.6 -1.1 hypothetical protein compare
BPHYT_RS26775 -2.6 -0.8 chemotaxis protein CheB compare
BPHYT_RS17685 -2.6 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17690 -2.6 -6.9 imidazole glycerol phosphate synthase compare
BPHYT_RS35750 -2.6 -0.9 hypothetical protein compare
BPHYT_RS05010 -2.6 -3.0 RpiR family transcriptional regulator compare
BPHYT_RS21700 -2.6 -1.5 phosphotransacetylase compare
BPHYT_RS25575 -2.6 -0.9 alpha/beta hydrolase compare
BPHYT_RS04285 -2.6 -1.1 rhamnosyltransferase compare
BPHYT_RS13705 -2.6 -3.2 chorismate synthase compare
BPHYT_RS02880 -2.5 -0.9 ATP-dependent protease compare
BPHYT_RS00690 -2.5 -0.9 transcriptional regulator compare
BPHYT_RS17920 -2.5 -1.1 protein CyaY compare
BPHYT_RS08770 -2.5 -1.7 universal stress protein A compare
BPHYT_RS17400 -2.5 -4.4 anthranilate phosphoribosyltransferase compare
BPHYT_RS14190 -2.4 -6.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS32260 -2.4 -0.8 hypothetical protein compare
BPHYT_RS05290 -2.4 -0.9 hypothetical protein compare
BPHYT_RS11325 -2.4 -3.1 voltage-gated chloride channel protein ClcB compare
BPHYT_RS31040 -2.4 -1.5 sugar transporter compare
BPHYT_RS16320 -2.4 -2.2 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS33875 -2.4 -4.6 tryptophan synthase subunit alpha compare
BPHYT_RS23975 -2.4 -2.0 peroxidase compare
BPHYT_RS32290 -2.4 -1.7 hypothetical protein compare
BPHYT_RS16255 -2.3 -3.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS33150 -2.3 -0.6 beta-lactamase compare
BPHYT_RS28470 -2.3 -1.1 hypothetical protein compare
BPHYT_RS08245 -2.3 -3.6 anti-sigma factor compare
BPHYT_RS11075 -2.3 -2.6 membrane protein compare
BPHYT_RS06375 -2.3 -3.9 ribonuclease compare
BPHYT_RS09465 -2.3 -1.2 transcriptional regulator compare
BPHYT_RS02975 -2.3 -2.5 membrane protein compare
BPHYT_RS11365 -2.3 -4.1 TetR family transcriptional regulator compare
BPHYT_RS08955 -2.3 -4.2 homoserine dehydrogenase compare
BPHYT_RS04725 -2.2 -4.1 sulfite reductase compare
BPHYT_RS33900 -2.2 -5.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS06555 -2.2 -7.4 ketol-acid reductoisomerase compare
BPHYT_RS14345 -2.2 -3.7 beta-hexosaminidase compare
BPHYT_RS02525 -2.2 -4.8 membrane protein compare
BPHYT_RS08000 -2.2 -1.9 antibiotic biosynthesis monooxygenase compare
BPHYT_RS12845 -2.2 -9.5 ATPase compare
BPHYT_RS02065 -2.2 -3.5 membrane protein compare
BPHYT_RS29915 -2.2 -1.5 GntR family transcriptional regulator compare
BPHYT_RS29810 -2.2 -1.1 hexapeptide transferase compare
BPHYT_RS15915 -2.1 -6.0 ornithine carbamoyltransferase compare
BPHYT_RS30890 -2.1 -1.0 hypothetical protein compare
BPHYT_RS09620 -2.1 -2.2 aminodeoxychorismate lyase compare
BPHYT_RS18255 -2.1 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS04720 -2.1 -4.7 transcriptional regulator compare
BPHYT_RS34645 -2.1 -2.7 hypothetical protein compare
BPHYT_RS02685 -2.1 -6.1 cytochrome C oxidase subunit I compare
BPHYT_RS12815 -2.1 -5.4 IclR family transcriptional regulator compare
BPHYT_RS14195 -2.1 -1.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS04730 -2.1 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS30465 -2.1 -0.9 short-chain dehydrogenase compare
BPHYT_RS13675 -2.1 -4.1 succinyl-CoA:3-ketoacid-CoA transferase compare
BPHYT_RS17855 -2.1 -7.4 glutamate synthase compare
BPHYT_RS25025 -2.1 -3.4 acyl-CoA dehydrogenase compare
BPHYT_RS18655 -2.1 -3.6 3-oxoacyl-ACP synthase compare
BPHYT_RS08135 -2.0 -1.0 hypothetical protein compare
BPHYT_RS26465 -2.0 -0.9 metallophosphoesterase compare
BPHYT_RS02665 -2.0 -8.3 MFS transporter compare
BPHYT_RS09860 -2.0 -0.9 pilus assembly protein PilP compare
BPHYT_RS02590 -2.0 -4.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS03265 -2.0 -2.3 hypothetical protein compare
BPHYT_RS15920 -2.0 -5.1 argininosuccinate synthase compare
BPHYT_RS14865 -2.0 -1.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS30140 -2.0 -1.1 3-methylitaconate isomerase compare
BPHYT_RS04955 -2.0 -1.4 methionyl-tRNA synthetase compare
BPHYT_RS06470 -2.0 -0.9 membrane protein compare
BPHYT_RS05650 -2.0 -1.2 hypothetical protein compare
BPHYT_RS02330 -2.0 -2.6 IclR family transcriptional regulator compare
BPHYT_RS33535 -2.0 -11.2 RNA polymerase sigma factor RpoD compare
BPHYT_RS18620 -2.0 -3.9 transcriptional regulator compare
BPHYT_RS14370 -1.9 -1.9 ribonuclease III compare
BPHYT_RS33915 -1.9 -3.5 isopropylmalate isomerase compare
BPHYT_RS16840 -1.9 -2.3 transketolase compare
BPHYT_RS04340 -1.9 -2.8 hypothetical protein compare
BPHYT_RS01505 -1.9 -1.2 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02865 -1.9 -1.3 hypothetical protein compare
BPHYT_RS12825 -1.9 -1.5 phasin family protein compare
BPHYT_RS06725 -1.9 -2.2 MaoC family dehydratase compare
BPHYT_RS06255 -1.9 -2.4 spore coat protein U compare
BPHYT_RS34430 -1.9 -0.9 2-keto-4-pentenoate hydratase compare
BPHYT_RS06545 -1.9 -5.0 acetolactate synthase compare
BPHYT_RS15015 -1.9 -0.6 ArsR family transcriptional regulator compare
BPHYT_RS09440 -1.9 -2.4 glycerate kinase compare
BPHYT_RS17390 -1.9 -7.5 anthranilate synthase subunit I compare
BPHYT_RS06550 -1.9 -1.6 acetolactate synthase compare
BPHYT_RS06405 -1.9 -3.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS12840 -1.9 -2.8 pyruvate dehydrogenase compare
BPHYT_RS17265 -1.8 -0.8 cell division protein compare
BPHYT_RS02480 -1.8 -0.8 alkaline phosphatase compare
BPHYT_RS27905 -1.8 -2.9 MFS transporter compare
BPHYT_RS03150 -1.8 -7.0 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS18320 -1.8 -5.3 orotate phosphoribosyltransferase compare
BPHYT_RS02640 -1.8 -8.3 cytochrome C oxidase compare
BPHYT_RS16675 -1.8 -1.0 dihydroorotase compare
BPHYT_RS26355 -1.8 -1.1 hypothetical protein compare
BPHYT_RS30205 -1.8 -3.2 dehalogenase compare
BPHYT_RS29425 -1.8 -3.5 IclR family transcriptional regulator compare
BPHYT_RS29105 -1.8 -1.6 class V aminotransferase compare
BPHYT_RS10720 -1.8 -0.8 hypothetical protein compare
BPHYT_RS00160 -1.8 -2.6 ABC transporter substrate-binding protein compare
BPHYT_RS28280 -1.8 -1.5 hypothetical protein compare
BPHYT_RS11180 -1.8 -4.0 SpoVR family protein compare
BPHYT_RS30040 -1.8 -0.8 hypothetical protein compare
BPHYT_RS22470 -1.8 -1.0 hydrolase compare
BPHYT_RS17715 -1.8 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS26340 -1.7 -2.8 cupin compare
BPHYT_RS16835 -1.7 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06975 -1.7 -1.1 glutamate racemase compare
BPHYT_RS17680 -1.7 -0.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS21170 -1.7 -1.5 LysR family transcriptional regulator compare
BPHYT_RS30745 -1.7 -1.5 hypothetical protein compare
BPHYT_RS06685 -1.7 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14595 -1.7 -1.6 RNA-binding protein compare
BPHYT_RS35655 -1.7 -1.0 hypothetical protein compare
BPHYT_RS07325 -1.7 -0.7 GntR family transcriptional regulator compare
BPHYT_RS26080 -1.7 -0.9 ABC transporter ATPase compare
BPHYT_RS04775 -1.7 -4.2 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
BPHYT_RS08385 -1.7 -1.1 secretion protein compare
BPHYT_RS10430 -1.7 -1.7 glycosyl transferase family 1 compare
BPHYT_RS14915 -1.7 -3.5 phosphoserine aminotransferase compare
BPHYT_RS25345 -1.7 -3.7 arylsulfatase compare
BPHYT_RS14395 -1.7 -5.0 sugar dehydratase compare
BPHYT_RS01595 -1.7 -4.9 homoserine O-acetyltransferase compare
BPHYT_RS33030 -1.7 -0.8 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Burkholderia phytofirmans PsJN

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms