Experiment set6IT058 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Hans 1000x minerals

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2487 -3.7 -1.8 FIG00956090: hypothetical protein compare
Pf6N2E2_3248 -2.9 -4.7 Probable transmembrane protein compare
Pf6N2E2_3908 -2.7 -6.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5242 -2.5 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3611 -2.3 -2.2 HflC protein compare
Pf6N2E2_2277 -2.2 -2.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4369 -2.0 -3.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4204 -2.0 -1.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_178 -2.0 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2413 -1.9 -2.8 FIG074102: hypothetical protein compare
Pf6N2E2_5001 -1.9 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4638 -1.8 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3634 -1.8 -2.4 Transporter compare
Pf6N2E2_4612 -1.8 -4.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1032 -1.7 -1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5178 -1.7 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3044 -1.6 -5.2 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Pf6N2E2_2318 -1.6 -6.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_384 -1.5 -3.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4057 -1.5 -1.3 lipoprotein, putative compare
Pf6N2E2_5527 -1.5 -1.8 Cold shock protein CspC compare
Pf6N2E2_3045 -1.5 -6.5 Transcriptional regulator, LysR family, in formaldehyde detoxification operon compare
Pf6N2E2_4541 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_2313 -1.5 -2.8 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2127 -1.5 -4.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2218 -1.5 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3303 -1.5 -3.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_6140 -1.4 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2646 -1.4 -2.0 FIG00953416: hypothetical protein compare
Pf6N2E2_2189 -1.4 -4.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5103 -1.3 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2181 -1.3 -1.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2180 -1.3 -2.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4889 -1.3 -4.6 Putative transport protein compare
Pf6N2E2_987 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_2794 -1.3 -1.9 putative membrane protein compare
Pf6N2E2_4803 -1.3 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2340 -1.3 -3.7 Transcriptional regulator, GntR family compare
Pf6N2E2_367 -1.2 -2.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1315 -1.2 -0.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5339 -1.2 -3.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2503 -1.2 -0.9 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2310 -1.2 -6.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3003 -1.2 -2.3 Bacteriophage protein GP46 compare
Pf6N2E2_2527 -1.2 -2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3460 -1.2 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4153 -1.1 -1.0 Sensory box histidine kinase compare
Pf6N2E2_3261 -1.1 -3.8 hypothetical protein compare
Pf6N2E2_922 -1.1 -1.9 FIG00794167: hypothetical protein compare
Pf6N2E2_5536 -1.1 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2509 -1.1 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4418 -1.1 -0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4181 -1.1 -1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_1044 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_3607 -1.1 -5.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2317 -1.1 -2.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4797 -1.0 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_579 -1.0 -1.9 FIG00962753: hypothetical protein compare
Pf6N2E2_1305 -1.0 -2.7 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_1682 -1.0 -2.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3095 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_5337 -1.0 -2.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_156 -1.0 -1.1 Carbon storage regulator compare
Pf6N2E2_5494 -1.0 -2.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1701 -1.0 -2.8 ABC transporter ATP-binding protein compare
Pf6N2E2_2088 -1.0 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5156 -1.0 -1.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3198 -1.0 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5640 -1.0 -1.8 FIG00955597: hypothetical protein compare
Pf6N2E2_5340 -1.0 -3.0 Stringent starvation protein A compare
Pf6N2E2_3785 -1.0 -3.4 Twin-arginine translocation protein TatB compare
Pf6N2E2_2320 -1.0 -2.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_6099 -1.0 -1.0 tRNA-Glu-TTC compare
Pf6N2E2_6081 -1.0 -2.5 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_2312 -1.0 -1.3 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2605 -1.0 -3.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4159 -1.0 -2.5 Cytochrome c4 compare
Pf6N2E2_1336 -1.0 -2.2 AraC family transcription regulator compare
Pf6N2E2_5571 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_2311 -0.9 -4.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5338 -0.9 -4.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_919 -0.9 -1.7 FIG00954373: hypothetical protein compare
Pf6N2E2_1875 -0.9 -1.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_4417 -0.9 -2.7 Protein of unknown function DUF484 compare
Pf6N2E2_2869 -0.9 -1.4 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2264 -0.9 -2.2 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1691 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_1656 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_4974 -0.9 -4.2 DedA protein compare
Pf6N2E2_1323 -0.9 -2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5749 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_4988 -0.9 -3.0 Antiholin-like protein LrgA compare
Pf6N2E2_2074 -0.9 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3192 -0.9 -2.3 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_2433 -0.9 -2.8 Probable transmembrane protein compare
Pf6N2E2_623 -0.8 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_3039 -0.8 -3.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_70 -0.8 -2.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_971 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2755 -0.8 -0.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5014 -0.8 -0.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3546 -0.8 -2.2 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_1056 -0.8 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3563 -0.8 -2.5 FMN-dependent NADH-azoreductase compare
Pf6N2E2_3264 -0.8 -1.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_1673 -0.8 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_766 -0.8 -2.3 Fap protein with C39 domain compare
Pf6N2E2_300 -0.8 -2.6 CrcB protein compare
Pf6N2E2_2518 -0.8 -1.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_737 -0.8 -1.3 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3801 -0.8 -2.8 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf6N2E2_5739 -0.8 -0.8 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2126 -0.8 -2.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_4825 -0.8 -3.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3505 -0.8 -0.9 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3475 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2375 -0.8 -1.2 Response regulator NasT compare
Pf6N2E2_2912 -0.8 -1.2 FIG00954094: hypothetical protein compare
Pf6N2E2_3455 -0.8 -2.3 Integral membrane protein YfiB compare
Pf6N2E2_377 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_1611 -0.8 -1.7 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_649 -0.8 -1.7 General secretion pathway protein L compare
Pf6N2E2_6075 -0.8 -1.3 Chromosome segregation ATPases compare
Pf6N2E2_4587 -0.7 -2.8 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
Pf6N2E2_4599 -0.7 -2.0 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5006 -0.7 -3.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_6055 -0.7 -3.1 Homoserine kinase (EC 2.7.1.39) compare
Pf6N2E2_127 -0.7 -1.3 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5319 -0.7 -3.6 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5705 -0.7 -1.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1614 -0.7 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_87 -0.7 -3.5 hypothetical protein compare
Pf6N2E2_4059 -0.7 -0.8 DNA-binding protein HU-alpha compare
Pf6N2E2_4467 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_449 -0.7 -1.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_4162 -0.7 -1.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2193 -0.7 -2.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_2064 -0.7 -1.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5554 -0.7 -2.4 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1665 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_5523 -0.7 -2.4 Small-conductance mechanosensitive channel compare
Pf6N2E2_1099 -0.7 -1.5 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2724 -0.7 -2.6 Nitroreductase family protein compare
Pf6N2E2_5768 -0.7 -1.9 DNA recombination-dependent growth factor C compare
Pf6N2E2_5679 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_2861 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_4614 -0.7 -2.0 twitching motility protein PilH compare
Pf6N2E2_2479 -0.7 -1.9 Transcription elongation factor GreB compare
Pf6N2E2_5320 -0.7 -3.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_187 -0.7 -2.2 Urea ABC transporter, ATPase protein UrtE compare
Pf6N2E2_1249 -0.7 -2.2 Transcriptional regulator, AraC family compare
Pf6N2E2_3782 -0.7 -1.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1634 -0.7 -2.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1031 -0.7 -1.9 Alkanesulfonates transport system permease protein compare
Pf6N2E2_2823 -0.7 -2.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_1617 -0.7 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2188 -0.7 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_3658 -0.7 -3.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4499 -0.7 -0.7 protein of unknown function DUF86 compare
Pf6N2E2_3326 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_3957 -0.7 -1.9 Putative membrane-bound ClpP-class protease associated with aq_911 compare
Pf6N2E2_4364 -0.7 -1.7 Protein YicC compare
Pf6N2E2_3568 -0.7 -1.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_6065 -0.7 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1671 -0.6 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2217 -0.6 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3696 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_5950 -0.6 -1.9 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2152 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_352 -0.6 -2.8 Opine oxidase subunit B compare
Pf6N2E2_3806 -0.6 -1.7 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_90 -0.6 -2.5 Lipoprotein, putative compare
Pf6N2E2_1434 -0.6 -1.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_63 -0.6 -2.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2192 -0.6 -3.8 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_5567 -0.6 -1.5 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_596 -0.6 -2.8 Arsenic efflux pump protein compare
Pf6N2E2_2363 -0.6 -1.4 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_1694 -0.6 -0.9 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2791 -0.6 -1.5 FIG00954883: hypothetical protein compare
Pf6N2E2_4272 -0.6 -1.7 putative membrane protein compare
Pf6N2E2_4276 -0.6 -2.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2526 -0.6 -2.5 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_2194 -0.6 -3.4 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_5820 -0.6 -1.6 FIG00957914: hypothetical protein compare
Pf6N2E2_116 -0.6 -1.7 Glycosyltransferase compare
Pf6N2E2_1199 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_438 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_1624 -0.6 -2.6 MbtH-like protein compare
Pf6N2E2_1825 -0.6 -1.7 FOG: EAL domain protein compare
Pf6N2E2_4640 -0.6 -0.7 hypothetical protein compare
Pf6N2E2_648 -0.6 -0.9 General secretion pathway protein K compare
Pf6N2E2_5993 -0.6 -1.5 FIG00957412: hypothetical protein compare
Pf6N2E2_1834 -0.6 -0.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2144 -0.6 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3695 -0.6 -2.1 Helix-turn-helix motif compare
Pf6N2E2_2707 -0.6 -1.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_6047 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_146 -0.6 -1.4 Transcriptional regulator, MarR family compare
Pf6N2E2_5316 -0.6 -1.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare


Specific Phenotypes

For 2 genes in this experiment

For stress Hans 1000x minerals in Pseudomonas fluorescens FW300-N2E2

For stress Hans 1000x minerals across organisms