Experiment set6IT058 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium nitrite nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO356_01545 +1.8 3.6 hypothetical protein compare
AO356_21765 +1.0 2.1 GntR family transcriptional regulator compare
AO356_11610 +0.9 2.7 glycerol acyltransferase compare
AO356_27965 +0.9 2.2 benzaldehyde dehydrogenase compare
AO356_14540 +0.8 1.9 biotin--protein ligase compare
AO356_08670 +0.8 2.3 N-acetylmuramoyl-L-alanine amidase compare
AO356_26455 +0.8 1.8 hypothetical protein compare
AO356_13710 +0.8 1.7 fructose-bisphosphate aldolase compare
AO356_12275 +0.7 4.0 Hcp1 family type VI secretion system effector compare
AO356_03855 +0.7 6.1 AAA family ATPase compare
AO356_18245 +0.7 3.7 DeoR family transcriptional regulator compare
AO356_28610 +0.7 1.8 AraC family transcriptional regulator compare
AO356_01695 +0.7 2.8 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_03305 +0.7 2.3 ATPase compare
AO356_28515 +0.7 2.7 sugar ABC transporter permease compare
AO356_26655 +0.7 1.7 (2Fe-2S)-binding protein compare
AO356_24580 +0.7 3.9 GntR family transcriptional regulator compare
AO356_08910 +0.7 3.3 carbamoyltransferase compare
AO356_18435 +0.6 2.4 hypothetical protein compare
AO356_06735 +0.6 3.0 hypothetical protein compare
AO356_11045 +0.6 5.4 phosphate-binding protein compare
AO356_21590 +0.6 1.9 hypothetical protein compare
AO356_16185 +0.6 2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_24550 +0.6 1.6 hypothetical protein compare
AO356_00665 +0.6 2.2 IclR family transcriptional regulator compare
AO356_26360 +0.6 1.9 enoyl-CoA hydratase compare
AO356_05970 +0.6 2.0 ribonuclease HII compare
AO356_25455 +0.6 1.5 transcriptional regulator compare
AO356_20090 +0.6 2.1 protein tyrosine phosphatase compare
AO356_25110 +0.6 1.9 protein DnrP compare
AO356_26495 +0.6 1.7 hypothetical protein compare
AO356_18155 +0.6 1.6 cold-shock protein compare
AO356_12755 +0.6 2.3 nucleoside diphosphate kinase regulator compare
AO356_00875 +0.6 2.5 MerR family transcriptional regulator compare
AO356_19240 +0.6 1.6 cupin compare
AO356_10485 +0.6 1.9 hypothetical protein compare
AO356_28530 +0.6 2.6 mannonate dehydratase compare
AO356_26115 +0.6 2.5 (2Fe-2S)-binding protein compare
AO356_14060 +0.6 1.5 hypothetical protein compare
AO356_27915 +0.5 1.5 salicylaldehyde dehydrogenase compare
AO356_02735 +0.5 1.4 type III secretion regulator InvE compare
AO356_02640 +0.5 1.8 type III secretion system protein PrgJ compare
AO356_07155 +0.5 3.2 conjugal transfer protein TraR compare
AO356_15860 +0.5 1.7 general secretion pathway protein GspH compare
AO356_11410 +0.5 1.7 hypothetical protein compare
AO356_13205 +0.5 1.5 hypothetical protein compare
AO356_07020 +0.5 0.5 LPS export ABC transporter periplasmic protein LptC compare
AO356_03930 +0.5 2.7 flagellar biosynthesis protein FlgF compare
AO356_17575 +0.5 1.2 hypothetical protein compare
AO356_28240 +0.5 1.6 chemotaxis protein CheX compare
AO356_13395 +0.5 1.2 non-canonical purine NTP pyrophosphatase compare
AO356_17400 +0.5 2.3 transcriptional regulator compare
AO356_10880 +0.5 0.9 hypothetical protein compare
AO356_04020 +0.5 2.0 AraC family transcriptional regulator compare
AO356_13890 +0.5 2.5 hypothetical protein compare
AO356_04275 +0.5 1.0 3-oxoacyl-ACP synthase compare
AO356_26635 +0.5 1.5 hydrolase compare
AO356_24420 +0.5 2.5 XRE family transcriptional regulator compare
AO356_17465 +0.5 2.9 DNA polymerase III subunit chi compare
AO356_19425 +0.5 0.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_08365 +0.5 1.9 Urease maturation and nickel insertion protein UreD (from data) compare
AO356_11040 +0.5 4.6 phosphate ABC transporter permease compare
AO356_03620 +0.5 2.1 cytochrome C compare
AO356_01230 +0.5 1.2 GntR family transcriptional regulator compare
AO356_29730 +0.5 1.0 MarR family transcriptional regulator compare
AO356_05550 +0.5 2.1 DNA base-flipping protein YbaZ compare
AO356_04380 +0.5 2.0 restriction endonuclease compare
AO356_14905 +0.5 2.4 hypothetical protein compare
AO356_11005 +0.5 4.2 histidine kinase compare
AO356_11035 +0.5 3.5 phosphate ABC transporter permease compare
AO356_05465 +0.5 2.6 hypothetical protein compare
AO356_10935 +0.5 1.7 hypothetical protein compare
AO356_27400 +0.5 1.2 1,2-oxophytodienoate reductase compare
AO356_04900 +0.5 1.4 4-carboxymuconolactone decarboxylase compare
AO356_03740 +0.5 1.8 flagellar biosynthesis protein FlhF compare
AO356_14900 +0.5 1.5 zinc-binding protein compare
AO356_30005 +0.5 2.3 diguanylate cyclase compare
AO356_13880 +0.5 1.8 DNA-binding protein compare
AO356_09565 +0.5 2.8 glucan biosynthesis protein G compare
AO356_05540 +0.5 1.0 cold-shock protein compare
AO356_06940 +0.5 2.4 16S rRNA methyltransferase compare
AO356_22260 +0.5 1.7 isochorismatase compare
AO356_11090 +0.5 2.2 aspartate ammonia-lyase compare
AO356_10350 +0.5 3.4 phosphoenolpyruvate-protein phosphotransferase compare
AO356_19780 +0.5 3.5 histidine kinase compare
AO356_03840 +0.4 2.3 flagellar hook-basal body protein FliE compare
AO356_15620 +0.4 1.8 (2Fe-2S)-binding protein compare
AO356_19465 +0.4 1.9 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (from data) compare
AO356_30120 +0.4 1.8 sarcosine oxidase compare
AO356_03885 +0.4 3.1 beta-ketoacyl-ACP synthase compare
AO356_20970 +0.4 2.1 TetR family transcriptional regulator compare
AO356_00385 +0.4 0.8 peptidylprolyl isomerase compare
AO356_03725 +0.4 1.1 histidine kinase compare
AO356_28370 +0.4 0.8 ABC transporter ATP-binding protein compare
AO356_19405 +0.4 2.0 pseudouridine synthase compare
AO356_25555 +0.4 1.9 transcriptional regulator compare
AO356_10555 +0.4 3.6 hemolysin secretion protein D compare
AO356_30060 +0.4 1.3 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase compare
AO356_08755 +0.4 1.0 aspartyl protease compare
AO356_27985 +0.4 1.7 sorbitol dehydrogenase compare
AO356_23645 +0.4 1.1 hypothetical protein compare
AO356_19210 +0.4 1.3 hypothetical protein compare
AO356_25765 +0.4 2.6 carnitine dehydratase compare
AO356_04345 +0.4 1.9 hypothetical protein compare
AO356_22980 +0.4 1.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_02380 +0.4 1.7 23S rRNA methyltransferase compare
AO356_03770 +0.4 2.1 flagellar biosynthesis protein flip compare
AO356_05800 +0.4 1.3 hypothetical protein compare
AO356_14075 +0.4 0.9 amino acid ABC transporter substrate-binding protein compare
AO356_10560 +0.4 3.5 ABC transporter compare
AO356_28125 +0.4 1.2 hypothetical protein compare
AO356_24310 +0.4 1.9 type IV secretion protein Rhs compare
AO356_28020 +0.4 1.6 ethanol oxidation regulatory protein ercA (from data) compare
AO356_18410 +0.4 1.6 phosphoesterase compare
AO356_27795 +0.4 1.8 hypothetical protein compare
AO356_03245 +0.4 1.1 hypothetical protein compare
AO356_03780 +0.4 0.8 flagellar motor switch protein compare
AO356_10445 +0.4 1.1 serine protease compare
AO356_10570 +0.4 3.7 large adhesive protein compare
AO356_01485 +0.4 1.8 transcriptional regulator compare
AO356_30215 +0.4 1.2 (2Fe-2S)-binding protein compare
AO356_29035 +0.4 1.6 multidrug transporter CflA compare
AO356_09560 +0.4 3.2 glucosyltransferase MdoH compare
AO356_13360 +0.4 2.0 monofunctional biosynthetic peptidoglycan transglycosylase compare
AO356_02195 +0.4 1.8 phosphatase compare
AO356_18920 +0.4 3.0 flagellar basal-body rod protein FlgC compare
AO356_09765 +0.4 0.9 sulfurtransferase compare
AO356_01865 +0.4 1.9 tyrosine protein phosphatase compare
AO356_03790 +0.4 2.7 flagellar basal body protein FliL compare
AO356_13050 +0.4 1.4 hypothetical protein compare
AO356_02800 +0.4 1.3 transporter compare
AO356_23770 +0.4 1.1 hypothetical protein compare
AO356_24965 +0.4 1.1 GntR family transcriptional regulator compare
AO356_16140 +0.4 2.2 hypothetical protein compare
AO356_27550 +0.4 1.4 3-oxoacyl-ACP synthase compare
AO356_00810 +0.4 0.6 hypothetical protein compare
AO356_14015 +0.4 2.0 hypothetical protein compare
AO356_22265 +0.4 1.9 hypothetical protein compare
AO356_22760 +0.4 1.7 alpha-ketoglutarate-dependent dioxygenase compare
AO356_25255 +0.4 1.7 FTR1 family iron permease compare
AO356_28910 +0.4 0.8 LysR family transcriptional regulator compare
AO356_25775 +0.4 1.8 peptide synthetase compare
AO356_06285 +0.4 2.2 LysR family transcriptional regulator compare
AO356_22950 +0.4 0.7 peptidylprolyl isomerase compare
AO356_28655 +0.4 2.3 3-(3-hydroxyphenyl)propionate hydroxylase compare
AO356_07470 +0.4 1.6 MFS transporter compare
AO356_06085 +0.4 1.2 thiamine biosynthesis protein ThiF compare
AO356_05515 +0.4 1.5 ABC transporter for L-Lysine, ATPase component (from data) compare
AO356_15235 +0.4 1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO356_24755 +0.4 0.8 type II secretion system protein GspH compare
AO356_16160 +0.4 1.8 pseudouridine synthase compare
AO356_07055 +0.4 1.2 phosphocarrier protein HPr compare
AO356_07230 +0.4 1.5 hypothetical protein compare
AO356_03065 +0.4 1.8 AAA family ATPase compare
AO356_07660 +0.4 1.7 hypothetical protein compare
AO356_21875 +0.4 1.8 hypothetical protein compare
AO356_07375 +0.4 1.8 dephospho-CoA kinase compare
AO356_17995 +0.4 0.9 hypothetical protein compare
AO356_08450 +0.4 2.4 urease accessory protein UreE compare
AO356_16730 +0.4 1.5 cell division protein DedD compare
AO356_11400 +0.4 2.3 glutamate:protein symporter compare
AO356_21095 +0.4 0.7 thioesterase compare
AO356_05490 +0.4 2.2 ATP-dependent DNA ligase compare
AO356_24215 +0.4 1.0 chemotaxis protein CheC compare
AO356_07075 +0.3 1.6 aspartate ammonia-lyase compare
AO356_25420 +0.3 0.9 chemotaxis protein CheY compare
AO356_26660 +0.3 1.2 carbon monoxide dehydrogenase compare
AO356_27880 +0.3 2.0 DNA-binding protein compare
AO356_10180 +0.3 1.7 hypothetical protein compare
AO356_25230 +0.3 1.8 cyclic pyranopterin phosphate synthase MoaA compare
AO356_17960 +0.3 1.3 nucleotide-binding protein compare
AO356_02975 +0.3 1.9 hypothetical protein compare
AO356_04905 +0.3 1.4 3-oxoadipate enol-lactonase compare
AO356_28580 +0.3 1.1 sugar ABC transporter permease compare
AO356_16755 +0.3 1.5 MerR family transcriptional regulator compare
AO356_08640 +0.3 1.4 membrane protease HflC compare
AO356_18475 +0.3 1.2 chemotaxis protein CheY compare
AO356_28460 +0.3 1.4 short-chain dehydrogenase compare
AO356_18720 +0.3 2.5 AraC family transcriptional regulator compare
AO356_24945 +0.3 1.7 pyridine nucleotide-disulfide oxidoreductase compare
AO356_22955 +0.3 0.9 ArsR family transcriptional regulator compare
AO356_26650 +0.3 1.2 4-chlorobenzoate--CoA ligase compare
AO356_05885 +0.3 2.4 RNA polymerase sigma factor RpoS compare
AO356_04885 +0.3 1.8 multidrug transporter compare
AO356_02270 +0.3 2.9 transcription-repair coupling factor compare
AO356_29795 +0.3 0.9 amino acid transporter compare
AO356_21795 +0.3 0.5 PBS lyase compare
AO356_20880 +0.3 1.0 3-methylitaconate isomerase compare
AO356_21560 +0.3 1.1 hypothetical protein compare
AO356_29080 +0.3 1.1 ornithine cyclodeaminase compare
AO356_28710 +0.3 0.5 aldehyde dehydrogenase compare
AO356_24775 +0.3 1.8 HxcX atypical pseudopilin compare
AO356_25350 +0.3 1.4 LysR family transcriptional regulator compare
AO356_19790 +0.3 3.0 TonB-dependent receptor compare
AO356_23395 +0.3 1.4 ABC transporter permease compare
AO356_23005 +0.3 1.2 hypothetical protein compare
AO356_03820 +0.3 2.7 flagellar protein export ATPase FliI compare
AO356_06150 +0.3 1.0 energy transducer TonB compare
AO356_26325 +0.3 1.4 dolichol-phosphate mannosyltransferase compare
AO356_03990 +0.3 1.0 nitroreductase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N2C3

For nitrogen source Sodium nitrite across organisms