Experiment set6IT058 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Minimal media pH6

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.3 -5.1 O-succinylhomoserine sulfhydrylase compare
AO353_20540 -5.0 -5.9 aromatic amino acid aminotransferase compare
AO353_13070 -5.0 -4.8 phosphoserine phosphatase compare
AO353_07210 -4.8 -4.7 indole-3-glycerol-phosphate synthase compare
AO353_02070 -4.6 -6.3 prephenate dehydratase compare
AO353_05115 -4.5 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20665 -4.5 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12070 -4.4 -7.9 imidazoleglycerol-phosphate dehydratase compare
AO353_07220 -4.4 -8.4 anthranilate synthase compare
AO353_07230 -4.4 -16.3 anthranilate synthase compare
AO353_14505 -4.4 -10.9 ketol-acid reductoisomerase compare
AO353_20635 -4.3 -12.7 3-isopropylmalate dehydrogenase compare
AO353_12090 -4.3 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_22800 -4.1 -2.8 sulfite reductase compare
AO353_05110 -4.1 -12.1 histidinol dehydrogenase compare
AO353_08180 -4.1 -13.6 homoserine O-acetyltransferase compare
AO353_00310 -4.1 -9.9 transaldolase compare
AO353_10950 -4.1 -10.2 thiol:disulfide interchange protein compare
AO353_24130 -4.1 -5.2 hypothetical protein compare
AO353_20625 -4.1 -4.8 3-isopropylmalate dehydratase compare
AO353_12360 -4.0 -9.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08185 -4.0 -12.1 methionine biosynthesis protein MetW compare
AO353_12515 -4.0 -24.2 glutamate synthase compare
AO353_10710 -3.9 -6.0 tryptophan synthase subunit beta compare
AO353_12520 -3.9 -13.2 glutamate synthase compare
AO353_13165 -3.8 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08345 -3.8 -9.9 dihydroxy-acid dehydratase compare
AO353_03360 -3.8 -10.3 glucose-6-phosphate dehydrogenase compare
AO353_14400 -3.8 -3.7 Fis family transcriptional regulator compare
AO353_02075 -3.8 -12.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12365 -3.8 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_14775 -3.7 -9.6 hypothetical protein compare
AO353_20620 -3.7 -8.2 isopropylmalate isomerase compare
AO353_12085 -3.7 -9.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08685 -3.7 -10.1 N-acetylglutamate synthase compare
AO353_19060 -3.7 -5.6 CysB family transcriptional regulator compare
AO353_10670 -3.7 -9.4 shikimate dehydrogenase compare
AO353_08475 -3.7 -11.5 phosphoserine phosphatase compare
AO353_00660 -3.7 -4.3 transcriptional regulator compare
AO353_14495 -3.5 -13.4 acetolactate synthase 3 catalytic subunit compare
AO353_00825 -3.5 -7.3 porin compare
AO353_12075 -3.5 -8.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14500 -3.5 -7.8 acetolactate synthase 3 regulatory subunit compare
AO353_05105 -3.5 -13.0 histidinol-phosphate aminotransferase compare
AO353_04105 -3.4 -10.8 argininosuccinate synthase compare
AO353_18890 -3.4 -6.1 cytochrome C compare
AO353_09240 -3.4 -3.3 acetylglutamate kinase compare
AO353_08015 -3.4 -8.4 5,10-methylenetetrahydrofolate reductase compare
AO353_07355 -3.3 -7.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_04155 -3.3 -13.6 ornithine carbamoyltransferase compare
AO353_07525 -3.3 -16.2 biotin synthase compare
AO353_09000 -3.3 -7.0 argininosuccinate lyase compare
AO353_07155 -3.3 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_03415 -3.3 -8.2 glucokinase compare
AO353_08510 -3.2 -5.8 3-phosphoglycerate dehydrogenase compare
AO353_07515 -3.2 -3.1 transporter compare
AO353_10035 -3.2 -10.4 LysR family transcriptional regulator compare
AO353_09285 -3.1 -13.0 reactive intermediate/imine deaminase compare
AO353_12105 -3.1 -9.6 peptidase S41 compare
AO353_12500 -3.1 -2.1 shikimate kinase compare
AO353_20175 -3.1 -5.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_15445 -3.0 -4.6 disulfide bond formation protein B compare
AO353_02720 -3.0 -7.9 cysteine synthase compare
AO353_15925 -3.0 -12.0 2-isopropylmalate synthase compare
AO353_10025 -3.0 -16.5 pyruvate carboxylase subunit B compare
AO353_14370 -3.0 -9.0 glucose-6-phosphate isomerase compare
AO353_08165 -3.0 -4.5 pyrroline-5-carboxylate reductase compare
AO353_28425 -3.0 -5.2 TetR family transcriptional regulator compare
AO353_14220 -3.0 -2.8 ribosomal large subunit pseudouridine synthase D compare
AO353_07215 -2.9 -9.7 anthranilate phosphoribosyltransferase compare
AO353_10945 -2.9 -4.5 cytochrome C compare
AO353_07505 -2.9 -11.0 dethiobiotin synthetase compare
AO353_06495 -2.8 -7.4 gamma-glutamyl phosphate reductase compare
AO353_16940 -2.8 -6.9 deoxycytidine triphosphate deaminase compare
AO353_10030 -2.8 -10.9 pyruvate carboxylase subunit A compare
AO353_03615 -2.7 -5.4 cold-shock protein compare
AO353_16890 -2.7 -8.4 virulence factor family protein compare
AO353_02685 -2.7 -5.5 phosphoribosylglycinamide formyltransferase compare
AO353_06155 -2.6 -9.5 copper-transporting ATPase compare
AO353_07510 -2.6 -11.8 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_19360 -2.6 -3.7 peroxiredoxin compare
AO353_08045 -2.5 -15.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07315 -2.5 -4.1 rRNA methyltransferase compare
AO353_05130 -2.5 -2.9 anti-anti-sigma factor compare
AO353_02250 -2.5 -4.9 chorismate synthase compare
AO353_14115 -2.5 -8.2 gamma-glutamyl kinase compare
AO353_04175 -2.5 -6.5 glycerol uptake facilitator GlpF compare
AO353_00430 -2.4 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_00600 -2.4 -8.6 cytochrome C oxidase Cbb3 compare
AO353_08780 -2.4 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_16895 -2.4 -15.7 hypothetical protein compare
AO353_17035 -2.4 -6.1 hypothetical protein compare
AO353_07520 -2.4 -13.6 8-amino-7-oxononanoate synthase compare
AO353_02710 -2.4 -13.5 (p)ppGpp synthetase compare
AO353_12345 -2.4 -3.4 twin-arginine protein translocation system subunit TatC compare
AO353_06040 -2.3 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_03020 -2.3 -8.1 arginine N-succinyltransferase compare
AO353_05080 -2.3 -11.8 sulfate adenylyltransferase compare
AO353_13100 -2.3 -2.6 GTPase RsgA compare
AO353_15250 -2.2 -4.7 cytochrome B compare
AO353_06850 -2.2 -5.3 MFS transporter compare
AO353_11850 -2.2 -5.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10495 -2.2 -4.5 serine hydroxymethyltransferase compare
AO353_00750 -2.2 -4.7 GntR family transcriptional regulator compare
AO353_10705 -2.1 -5.2 tryptophan synthase subunit alpha compare
AO353_05075 -2.1 -10.0 adenylylsulfate kinase compare
AO353_15905 -2.1 -8.4 outer membrane protein assembly factor BamB compare
AO353_00635 -2.1 -4.7 hypothetical protein compare
AO353_12935 -2.1 -5.0 glycosyltransferase compare
AO353_12115 -2.1 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03420 -2.1 -5.3 phosphogluconate dehydratase compare
AO353_00650 -2.1 -4.1 cytochrome biogenesis protein compare
AO353_03585 -2.0 -3.6 ATP-dependent DNA helicase RuvA compare
AO353_03795 -2.0 -5.4 fumarate hydratase compare
AO353_13605 -2.0 -9.5 oxidoreductase compare
AO353_03775 -1.9 -9.0 pyruvate kinase compare
AO353_03250 -1.9 -2.5 gluconokinase compare
AO353_10455 -1.9 -2.8 tRNA modification GTPase MnmE compare
AO353_00585 -1.9 -10.5 cytochrome C oxidase Cbb3 compare
AO353_09040 -1.9 -2.2 diaminopimelate epimerase compare
AO353_20200 -1.9 -4.4 peptidylprolyl isomerase compare
AO353_14420 -1.9 -5.7 molecular chaperone DnaK compare
AO353_20170 -1.8 -5.5 trigger factor compare
AO353_08350 -1.8 -7.5 hypothetical protein compare
AO353_03425 -1.8 -8.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13600 -1.8 -4.9 precorrin-6Y C5,15-methyltransferase compare
AO353_06045 -1.8 -7.9 exodeoxyribonuclease V subunit beta compare
AO353_04355 -1.8 -3.1 homoserine dehydrogenase compare
AO353_20565 -1.8 -2.5 tRNA-Ala compare
AO353_06050 -1.7 -7.8 exodeoxyribonuclease V subunit gamma compare
AO353_04520 -1.7 -5.5 elongation factor 4 compare
AO353_02440 -1.7 -11.0 peptidase S41 compare
AO353_21630 -1.7 -3.0 precorrin-4 C11-methyltransferase compare
AO353_01410 -1.7 -3.6 ribonuclease E compare
AO353_03630 -1.7 -11.0 porin compare
AO353_15900 -1.7 -2.7 GTP-binding protein compare
AO353_00610 -1.6 -2.7 cytochrome C oxidase Cbb3 compare
AO353_00630 -1.6 -5.7 (Fe-S)-binding protein compare
AO353_08115 -1.6 -5.3 energy transducer TonB compare
AO353_13225 -1.6 -3.8 50S ribosomal protein L9 compare
AO353_05150 -1.6 -5.8 ABC transporter ATP-binding protein compare
AO353_00490 -1.6 -2.4 PasA protein compare
AO353_14740 -1.6 -4.3 GTP-binding protein compare
AO353_11165 -1.6 -8.7 hypothetical protein compare
AO353_08885 -1.6 -11.3 polyphosphate kinase compare
AO353_09890 -1.6 -5.4 phosphate ABC transporter ATP-binding protein compare
AO353_03430 -1.6 -3.1 methylglyoxal synthase compare
AO353_02640 -1.6 -2.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_01375 -1.5 -5.9 phosphate acyltransferase compare
AO353_03245 -1.5 -6.4 permease DsdX compare
AO353_13640 -1.5 -3.5 histidine kinase compare
AO353_16450 -1.5 -8.1 protein-PII uridylyltransferase compare
AO353_20370 -1.5 -3.8 MerR family transcriptional regulator compare
AO353_17160 -1.5 -2.3 aspartate-semialdehyde dehydrogenase compare
AO353_12650 -1.5 -1.7 hypothetical protein compare
AO353_13620 -1.5 -8.5 precorrin-3B C17-methyltransferase compare
AO353_21625 -1.5 -1.7 Fe/S biogenesis protein NfuA compare
AO353_00330 -1.5 -7.4 hypothetical protein compare
AO353_06415 -1.5 -3.1 hypothetical protein compare
AO353_00590 -1.4 -5.0 cytochrome C oxidase Cbb3 compare
AO353_03590 -1.4 -3.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_27650 -1.4 -4.3 cell division protein FtsK compare
AO353_02610 -1.4 -5.7 adenosylcobinamide kinase compare
AO353_15725 -1.4 -3.5 hypothetical protein compare
AO353_13080 -1.4 -5.7 thiosulfate sulfurtransferase compare
AO353_17675 -1.4 -4.5 hypothetical protein compare
AO353_09900 -1.4 -8.2 phosphate ABC transporter permease compare
AO353_00460 -1.4 -2.3 TetR family transcriptional regulator compare
AO353_00185 -1.4 -2.6 phage tail protein compare
AO353_18135 -1.3 -2.0 hypothetical protein compare
AO353_02975 -1.3 -2.3 aspartate kinase compare
AO353_08765 -1.3 -4.6 hypothetical protein compare
AO353_20185 -1.3 -5.6 DNA-binding protein compare
AO353_14990 -1.3 -2.6 hypothetical protein compare
AO353_03580 -1.3 -3.0 ATP-dependent DNA helicase RuvB compare
AO353_09720 -1.3 -1.7 hypothetical protein compare
AO353_02020 -1.3 -4.6 hypothetical protein compare
AO353_13610 -1.3 -3.8 precorrin isomerase compare
AO353_19145 -1.3 -3.9 protease HtpX compare
AO353_12315 -1.3 -8.6 glucosyltransferase MdoH compare
AO353_20095 -1.2 -4.2 histidine kinase compare
AO353_28300 -1.2 -4.1 cupin compare
AO353_16880 -1.2 -8.7 potassium transporter Kup compare
AO353_03015 -1.2 -4.1 arginine N-succinyltransferase compare
AO353_07325 -1.2 -1.8 diadenosine tetraphosphatase compare
AO353_03385 -1.2 -6.2 sugar ABC transporter permease compare
AO353_18830 -1.2 -4.5 chemotaxis protein CheW compare
AO353_23155 -1.2 -3.2 IclR family transcriptional regulator compare
AO353_21455 -1.2 -1.8 cation:proton antiporter compare
AO353_08505 -1.2 -7.2 FAD-linked oxidase compare
AO353_25335 -1.2 -1.5 malonate decarboxylase acyl carrier protein compare
AO353_10505 -1.2 -3.0 hypothetical protein compare
AO353_03025 -1.2 -3.5 acetylornithine aminotransferase compare
AO353_05145 -1.2 -4.7 ABC transporter permease compare
AO353_03395 -1.2 -6.1 sugar ABC transporter substrate-binding protein compare
AO353_19295 -1.2 -1.9 hypothetical protein compare
AO353_04220 -1.2 -4.1 chemotaxis protein CheY compare
AO353_10435 -1.2 -7.0 chromosome partitioning protein compare
AO353_14405 -1.2 -7.0 ATPase compare
AO353_12310 -1.2 -6.9 glucan biosynthesis protein G compare


Specific Phenotypes

For 6 genes in this experiment