Experiment set6IT058 for Burkholderia phytofirmans PsJN

Compare to:

2-Deoxy-D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS25785 +4.0 7.3 sugar ABC transporter permease conserved
BPHYT_RS25800 +2.6 5.0 sugar ABC transporter permease compare
BPHYT_RS17520 +2.6 10.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS22600 +2.1 6.7 transport protein RbsD/FucU conserved
BPHYT_RS11040 +1.7 2.7 GntR family transcriptional regulator compare
BPHYT_RS34240 +1.7 3.9 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS16065 +1.6 1.5 LacI family transcriptional regulator compare
BPHYT_RS22940 +1.5 1.7 pilus assembly protein TadE compare
BPHYT_RS18935 +1.5 8.5 flagellar biosynthesis regulator FlhF compare
BPHYT_RS30265 +1.4 1.9 hypothetical protein compare
BPHYT_RS14485 +1.4 3.7 ribonuclease E compare
BPHYT_RS25780 +1.4 2.3 DeoR faimly transcriptional regulator compare
BPHYT_RS05610 +1.4 7.1 DNA-cytosine methyltransferase compare
BPHYT_RS30415 +1.3 1.8 AraC family transcriptional regulator compare
BPHYT_RS13390 +1.3 1.5 IclR family transcriptional regulator compare
BPHYT_RS27175 +1.3 1.0 DNA-binding protein compare
BPHYT_RS06990 +1.3 2.1 membrane protein compare
BPHYT_RS04335 +1.3 2.6 membrane protein compare
BPHYT_RS10165 +1.2 2.1 transcriptional regulator compare
BPHYT_RS18875 +1.2 6.2 flagellar basal body rod protein FlgF compare
BPHYT_RS34780 +1.2 6.4 phytoene synthase compare
BPHYT_RS18860 +1.2 5.8 flagellar P-ring protein FlgI compare
BPHYT_RS18945 +1.2 7.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS23155 +1.2 1.6 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS05235 +1.2 2.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS18940 +1.2 8.2 flagellar biosynthesis protein FlhA compare
BPHYT_RS34250 +1.2 6.0 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS18890 +1.2 7.8 flagellar basal body rod protein FlgC compare
BPHYT_RS18925 +1.1 7.7 RNA polymerase sigma70 compare
BPHYT_RS18880 +1.1 8.1 flagellar hook protein FlgE compare
BPHYT_RS18830 +1.1 8.0 flagellar biosynthesis protein FliQ compare
BPHYT_RS01790 +1.1 7.6 LuxR family transcriptional regulator compare
BPHYT_RS02905 +1.1 9.6 RNA polymerase subunit sigma-54 compare
BPHYT_RS00770 +1.1 1.1 conjugal transfer protein TraC compare
BPHYT_RS25875 +1.1 1.4 type III secretion protein compare
BPHYT_RS33820 +1.1 8.5 histidine kinase compare
BPHYT_RS18870 +1.1 4.2 flagellar basal body rod protein FlgG compare
BPHYT_RS18895 +1.0 4.5 flagellar basal body rod protein FlgB compare
BPHYT_RS22420 +1.0 1.3 membrane protein compare
BPHYT_RS18865 +1.0 3.7 flagellar L-ring protein FlgH compare
BPHYT_RS18900 +1.0 7.8 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS11050 +1.0 1.8 molecular chaperone compare
BPHYT_RS18810 +1.0 7.0 flagellar motor switch protein FliM compare
BPHYT_RS21470 +1.0 2.0 6-hydroxynicotinate reductase compare
BPHYT_RS02860 +1.0 0.8 membrane protein compare
BPHYT_RS24590 +1.0 1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS18800 +1.0 4.7 flagellar hook-length control protein compare
BPHYT_RS04710 +1.0 1.8 hypothetical protein compare
BPHYT_RS11685 +1.0 1.4 phasin family protein compare
BPHYT_RS08765 +1.0 1.1 ABC transporter ATP-binding protein compare
BPHYT_RS10645 +1.0 1.3 cyanate hydratase compare
BPHYT_RS18775 +0.9 7.7 flagellar M-ring protein FliF compare
BPHYT_RS34245 +0.9 4.1 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS22470 +0.9 1.8 hydrolase compare
BPHYT_RS34050 +0.9 3.0 secretion system protein F compare
BPHYT_RS18795 +0.9 6.1 flagellar export protein FliJ compare
BPHYT_RS18790 +0.9 5.5 ATP synthase compare
BPHYT_RS23540 +0.9 2.7 RND transporter compare
BPHYT_RS18785 +0.9 2.1 flagellar assembly protein FliH compare
BPHYT_RS18885 +0.9 5.8 flagellar basal body rod modification protein FlgD compare
BPHYT_RS11960 +0.9 1.1 MarR family transcriptional regulator compare
BPHYT_RS25820 +0.9 1.5 sugar ABC transporter compare
BPHYT_RS18825 +0.9 3.5 flagellar biosynthesis protein FliP compare
BPHYT_RS12590 +0.9 1.4 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS16130 +0.9 3.4 cation ABC transporter substrate-binding protein compare
BPHYT_RS14250 +0.9 4.3 glycosyl transferase compare
BPHYT_RS18805 +0.8 3.3 flagellar basal body protein FliL compare
BPHYT_RS24490 +0.8 2.2 hypothetical protein compare
BPHYT_RS05190 +0.8 3.3 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS20155 +0.8 0.7 hypothetical protein compare
BPHYT_RS27785 +0.8 1.9 hypothetical protein compare
BPHYT_RS12060 +0.8 1.3 hypothetical protein compare
BPHYT_RS14255 +0.8 6.2 ABC transporter compare
BPHYT_RS09115 +0.8 2.8 RNA polymerase sigma factor RpoS compare
BPHYT_RS31020 +0.8 1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS18855 +0.8 4.3 flagellar rod assembly protein FlgJ compare
BPHYT_RS33890 +0.8 5.8 fimbrial protein FimV compare
BPHYT_RS32880 +0.8 1.1 alanine acetyltransferase compare
BPHYT_RS06305 +0.8 2.4 small mechanosensitive ion channel protein MscS compare
BPHYT_RS26435 +0.8 1.0 hypothetical protein compare
BPHYT_RS26185 +0.8 1.2 thioesterase compare
BPHYT_RS36540 +0.8 1.9 hypothetical protein compare
BPHYT_RS14340 +0.8 5.3 Fis family transcriptional regulator compare
BPHYT_RS35770 +0.8 0.7 glyoxalase compare
BPHYT_RS07140 +0.8 2.2 hypothetical protein compare
BPHYT_RS21240 +0.7 5.2 LuxR family transcriptional regulator compare
BPHYT_RS30945 +0.7 2.3 LacI family transcriptional regulator compare
BPHYT_RS21925 +0.7 2.2 formimidoylglutamase compare
BPHYT_RS18780 +0.7 2.8 flagellar motor switch protein FliG compare
BPHYT_RS27370 +0.7 1.4 CoA transferase compare
BPHYT_RS04985 +0.7 1.7 hypothetical protein compare
BPHYT_RS25490 +0.7 2.1 hypothetical protein compare
BPHYT_RS03920 +0.7 2.3 lysine transporter LysE compare
BPHYT_RS05575 +0.7 4.6 Fis family transcriptional regulator compare
BPHYT_RS18930 +0.7 2.9 flagellar biosynthesis protein FlhG compare
BPHYT_RS15545 +0.7 1.4 isoaspartyl peptidase compare
BPHYT_RS01945 +0.7 1.7 hypothetical protein compare
BPHYT_RS22215 +0.7 2.4 hypothetical protein compare
BPHYT_RS11335 +0.7 1.9 hypothetical protein compare
BPHYT_RS09310 +0.7 2.6 sensor histidine kinase compare
BPHYT_RS16335 +0.7 1.0 membrane protein compare
BPHYT_RS31400 +0.7 0.9 methyl-accepting chemotaxis protein compare
BPHYT_RS30300 +0.7 2.1 FMN reductase compare
BPHYT_RS05800 +0.7 1.6 hypothetical protein compare
BPHYT_RS34800 +0.7 1.1 thioesterase compare
BPHYT_RS07900 +0.7 2.0 hypothetical protein compare
BPHYT_RS13900 +0.7 1.8 ATPase compare
BPHYT_RS14655 +0.7 4.6 Fis family transcriptional regulator compare
BPHYT_RS13755 +0.7 2.4 metallophosphoesterase compare
BPHYT_RS12290 +0.7 1.3 universal stress protein UspA compare
BPHYT_RS18610 +0.7 2.7 lytic transglycosylase compare
BPHYT_RS08545 +0.7 1.6 oxidoreductase compare
BPHYT_RS11820 +0.7 2.1 amidohydrolase compare
BPHYT_RS07595 +0.7 0.9 membrane protein compare
BPHYT_RS34295 +0.7 0.7 fimbrial protein compare
BPHYT_RS35310 +0.7 1.0 GCN5 family N-acetyltransferase compare
BPHYT_RS12820 +0.7 4.4 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS14865 +0.7 1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS29820 +0.7 2.3 hypothetical protein compare
BPHYT_RS26135 +0.7 1.0 ABC transporter permease compare
BPHYT_RS20280 +0.7 1.1 hypothetical protein compare
BPHYT_RS18910 +0.7 0.8 FlgN compare
BPHYT_RS08600 +0.7 1.0 hypothetical protein compare
BPHYT_RS14205 +0.7 3.7 lytic transglycosylase compare
BPHYT_RS36090 +0.7 1.4 hypothetical protein compare
BPHYT_RS27950 +0.7 2.0 dihydroxyacetone kinase compare
BPHYT_RS17825 +0.7 1.8 transcriptional regulator compare
BPHYT_RS35230 +0.7 1.1 type 11 methyltransferase compare
BPHYT_RS02660 +0.7 1.0 membrane protein compare
BPHYT_RS16275 +0.7 3.5 branched-chain amino acid transporter compare
BPHYT_RS17760 +0.7 3.4 ABC transporter permease compare
BPHYT_RS28900 +0.7 2.6 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS00900 +0.7 1.4 beta-lactamase compare
BPHYT_RS24580 +0.7 1.0 hypothetical protein compare
BPHYT_RS07210 +0.7 1.5 permease compare
BPHYT_RS19435 +0.7 1.8 16S rRNA methyltransferase compare
BPHYT_RS03135 +0.6 3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS27545 +0.6 1.1 histidine kinase compare
BPHYT_RS05560 +0.6 3.9 Fis family transcriptional regulator compare
BPHYT_RS09205 +0.6 1.4 cytochrome P450 compare
BPHYT_RS04315 +0.6 2.3 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS29370 +0.6 2.4 Fis family transcriptional regulator compare
BPHYT_RS24585 +0.6 1.2 NUDIX hydrolase compare
BPHYT_RS16590 +0.6 3.2 Fis family transcriptional regulator compare
BPHYT_RS30880 +0.6 2.0 peptidase S13 compare
BPHYT_RS23705 +0.6 4.9 hypothetical protein compare
BPHYT_RS17150 +0.6 2.3 type II secretion system protein compare
BPHYT_RS21485 +0.6 0.8 hypothetical protein compare
BPHYT_RS25440 +0.6 1.4 alanine dehydrogenase compare
BPHYT_RS04705 +0.6 2.5 oxidoreductase compare
BPHYT_RS10040 +0.6 0.8 hypothetical protein compare
BPHYT_RS30135 +0.6 2.0 SAM-dependent methyltransferase compare
BPHYT_RS15290 +0.6 1.5 tRNA-Arg compare
BPHYT_RS22125 +0.6 0.9 hypothetical protein compare
BPHYT_RS09705 +0.6 2.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
BPHYT_RS30130 +0.6 1.4 AraC family transcriptional regulator compare
BPHYT_RS25295 +0.6 1.4 cobalt transporter compare
BPHYT_RS03410 +0.6 1.6 queuine tRNA-ribosyltransferase compare
BPHYT_RS26040 +0.6 1.1 cysteine hydrolase compare
BPHYT_RS20690 +0.6 1.6 ABC transporter permease compare
BPHYT_RS32860 +0.6 0.7 hypothetical protein compare
BPHYT_RS00955 +0.6 1.2 DNA polymerase compare
BPHYT_RS31090 +0.6 2.3 hypothetical protein compare
BPHYT_RS04830 +0.6 1.9 hypothetical protein compare
BPHYT_RS03320 +0.6 1.7 lactoylglutathione lyase compare
BPHYT_RS25480 +0.6 2.2 hypothetical protein compare
BPHYT_RS14060 +0.6 1.0 peptidase M23 compare
BPHYT_RS03265 +0.6 1.4 hypothetical protein compare
BPHYT_RS06425 +0.6 1.5 methylglyoxal synthase compare
BPHYT_RS09090 +0.6 2.0 ABC transporter permease compare
BPHYT_RS05140 +0.6 2.9 manganese transporter compare
BPHYT_RS07570 +0.6 0.9 hypothetical protein compare
BPHYT_RS28830 +0.6 0.7 LysR family transcriptional regulator compare
BPHYT_RS23535 +0.6 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS28740 +0.6 1.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS13420 +0.6 2.8 hypothetical protein compare
BPHYT_RS25980 +0.6 0.6 urea carboxylase compare
BPHYT_RS20715 +0.6 0.9 peptidase compare
BPHYT_RS34560 +0.6 2.0 hypothetical protein compare
BPHYT_RS03820 +0.6 2.3 major facilitator superfamily protein compare
BPHYT_RS25825 +0.6 2.3 ABC transporter permease compare
BPHYT_RS04045 +0.6 4.2 acyltransferase compare
BPHYT_RS33810 +0.6 1.7 membrane protein compare
BPHYT_RS04000 +0.6 2.1 GDP-mannose 4,6-dehydratase compare
BPHYT_RS06285 +0.6 1.6 diguanylate cyclase compare
BPHYT_RS30085 +0.6 1.2 hypothetical protein compare
BPHYT_RS18655 +0.6 1.4 3-oxoacyl-ACP synthase compare
BPHYT_RS12640 +0.6 3.9 phosphoesterase compare
BPHYT_RS24010 +0.6 1.4 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS05520 +0.6 2.3 transcriptional regulator compare
BPHYT_RS04510 +0.6 1.8 urease subunit alpha compare
BPHYT_RS01795 +0.6 3.6 histidine kinase compare
BPHYT_RS23185 +0.6 1.1 MFS transporter compare
BPHYT_RS22750 +0.6 1.7 Flagellar brake protein YcgR 2 compare
BPHYT_RS36420 +0.6 1.5 hypothetical protein compare
BPHYT_RS11655 +0.6 1.1 chromosome partitioning protein ParB compare
BPHYT_RS20670 +0.6 2.2 carbon-nitrogen hydrolase compare
BPHYT_RS10985 +0.6 1.8 MFS transporter compare
BPHYT_RS24480 +0.6 1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS33340 +0.6 2.0 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Burkholderia phytofirmans PsJN

For carbon source 2-Deoxy-D-Ribose across organisms