Experiment set6IT057 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium antimonate 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5928 -5.0 -7.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5705 -4.2 -2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4148 -4.0 -7.7 Glutamate-aspartate carrier protein compare
Pf6N2E2_5573 -3.9 -5.3 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_2320 -3.9 -2.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5068 -3.8 -12.1 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4353 -3.8 -4.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3607 -3.8 -8.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1475 -3.8 -6.7 Arsenic resistance protein ArsH compare
Pf6N2E2_5155 -3.8 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5178 -3.7 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3908 -3.6 -2.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_61 -3.6 -9.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4159 -3.5 -4.8 Cytochrome c4 compare
Pf6N2E2_2507 -3.4 -5.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5316 -3.3 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3941 -3.3 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5430 -3.2 -8.6 Transglycosylase, Slt family compare
Pf6N2E2_62 -3.1 -5.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3658 -3.1 -6.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4369 -3.1 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5069 -3.1 -5.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3807 -3.0 -4.6 Histidine utilization repressor compare
Pf6N2E2_2586 -3.0 -2.0 Hpt domain protein compare
Pf6N2E2_2827 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_70 -2.9 -3.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5927 -2.9 -4.1 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_2438 -2.8 -2.5 hypothetical protein compare
Pf6N2E2_2127 -2.7 -4.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5666 -2.7 -7.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2261 -2.6 -4.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_5001 -2.6 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_1476 -2.6 -4.8 (AF179595) Vco33 compare
Pf6N2E2_4084 -2.6 -5.9 Transcriptional regulator compare
Pf6N2E2_5665 -2.5 -9.4 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_2317 -2.4 -4.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3847 -2.4 -3.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_4612 -2.3 -3.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5319 -2.3 -7.5 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5030 -2.3 -6.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_3303 -2.3 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2536 -2.3 -2.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_3260 -2.2 -4.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5527 -2.2 -2.5 Cold shock protein CspC compare
Pf6N2E2_2508 -2.2 -2.9 hypothetical protein compare
Pf6N2E2_4614 -2.2 -3.9 twitching motility protein PilH compare
Pf6N2E2_5014 -2.1 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3659 -2.1 -4.5 Protein fixF compare
Pf6N2E2_3783 -2.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2176 -2.1 -2.1 Amidases related to nicotinamidase compare
Pf6N2E2_623 -2.0 -1.6 FIG00954674: hypothetical protein compare
Pf6N2E2_3611 -2.0 -1.9 HflC protein compare
Pf6N2E2_5339 -2.0 -5.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3351 -2.0 -3.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3529 -2.0 -2.1 Toxin A compare
Pf6N2E2_2111 -1.9 -3.3 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_4153 -1.9 -1.3 Sensory box histidine kinase compare
Pf6N2E2_5771 -1.9 -6.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3271 -1.9 -2.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5669 -1.9 -5.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_2180 -1.9 -3.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3258 -1.9 -2.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3338 -1.9 -2.2 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_563 -1.9 -6.4 Serine transporter compare
Pf6N2E2_5103 -1.9 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5671 -1.9 -3.2 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3252 -1.8 -5.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5320 -1.8 -6.2 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_1720 -1.8 -3.0 hypothetical protein compare
Pf6N2E2_3610 -1.8 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4638 -1.8 -2.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2938 -1.8 -4.1 Outer membrane lipoprotein compare
Pf6N2E2_5406 -1.8 -2.5 FIG00958224: hypothetical protein compare
Pf6N2E2_5342 -1.8 -3.2 21 kDa hemolysin precursor compare
Pf6N2E2_3782 -1.8 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2574 -1.8 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_3617 -1.8 -4.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2886 -1.8 -10.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4077 -1.8 -1.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5520 -1.7 -5.2 Sensory box histidine kinase compare
Pf6N2E2_5668 -1.7 -3.8 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3661 -1.7 -3.7 hypothetical protein compare
Pf6N2E2_4087 -1.7 -6.9 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf6N2E2_5318 -1.7 -11.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4773 -1.7 -1.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2318 -1.7 -6.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4454 -1.7 -4.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1694 -1.7 -1.5 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5820 -1.6 -3.0 FIG00957914: hypothetical protein compare
Pf6N2E2_3257 -1.6 -2.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4075 -1.6 -4.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2126 -1.6 -5.0 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5242 -1.6 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4418 -1.6 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5667 -1.6 -4.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2311 -1.6 -5.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2506 -1.6 -9.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_620 -1.5 -4.8 BatD compare
Pf6N2E2_2552 -1.5 -4.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4451 -1.5 -3.8 FIG139438: lipoprotein B compare
Pf6N2E2_3634 -1.5 -1.9 Transporter compare
Pf6N2E2_5338 -1.5 -6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_625 -1.5 -3.9 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1477 -1.5 -4.1 hypothetical protein compare
Pf6N2E2_5536 -1.5 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_6099 -1.5 -1.1 tRNA-Glu-TTC compare
Pf6N2E2_28 -1.5 -3.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_1984 -1.5 -2.5 probable exported protein STY4558 compare
Pf6N2E2_2310 -1.4 -7.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4611 -1.4 -2.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1056 -1.4 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_621 -1.4 -4.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2682 -1.4 -2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_2124 -1.4 -1.7 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5816 -1.4 -1.6 Smr domain protein compare
Pf6N2E2_3876 -1.4 -3.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5677 -1.4 -1.2 Carbon storage regulator compare
Pf6N2E2_902 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_1323 -1.4 -2.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_6001 -1.3 -6.1 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5006 -1.3 -5.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3282 -1.3 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_5523 -1.3 -2.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_3588 -1.3 -2.9 hypothetical protein compare
Pf6N2E2_3199 -1.3 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4437 -1.3 -3.6 Twin-arginine translocation protein TatB compare
Pf6N2E2_4889 -1.3 -4.0 Putative transport protein compare
Pf6N2E2_3461 -1.3 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2384 -1.3 -3.3 CmpX compare
Pf6N2E2_4181 -1.3 -1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_587 -1.3 -4.4 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf6N2E2_2527 -1.3 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3786 -1.3 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_6046 -1.3 -2.6 hypothetical protein compare
Pf6N2E2_4918 -1.3 -2.2 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5160 -1.3 -1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3454 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_6081 -1.3 -2.6 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_5337 -1.3 -2.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4372 -1.2 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_2755 -1.2 -0.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4640 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_3834 -1.2 -3.7 Lipoprotein NlpD compare
Pf6N2E2_4378 -1.2 -7.9 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf6N2E2_2292 -1.2 -2.2 Universal stress protein family COG0589 compare
Pf6N2E2_5370 -1.2 -5.3 LysR family transcriptional regulator QseA compare
Pf6N2E2_3842 -1.2 -2.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_605 -1.2 -2.3 FIG002465: BNR repeat protein compare
Pf6N2E2_4162 -1.2 -1.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5442 -1.2 -6.8 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf6N2E2_6064 -1.2 -3.1 2-methylaconitate isomerase compare
Pf6N2E2_3373 -1.2 -1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_310 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_6063 -1.2 -4.8 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_6140 -1.2 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3839 -1.2 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1735 -1.1 -1.7 PhnB protein compare
Pf6N2E2_3612 -1.1 -1.8 HflK protein compare
Pf6N2E2_4531 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_464 -1.1 -2.0 Sensory histidine kinase QseC compare
Pf6N2E2_1129 -1.1 -2.9 Sensor histidine kinase compare
Pf6N2E2_1169 -1.1 -1.9 TnpR protein compare
Pf6N2E2_1987 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_2424 -1.1 -2.5 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_2152 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_647 -1.1 -2.1 General secretion pathway protein G compare
Pf6N2E2_4762 -1.1 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_2509 -1.1 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_477 -1.1 -3.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_3432 -1.1 -1.9 Ais protein, putative compare
Pf6N2E2_1474 -1.1 -3.8 SAM-dependent methyltransferases compare
Pf6N2E2_2428 -1.1 -1.5 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_766 -1.1 -2.4 Fap protein with C39 domain compare
Pf6N2E2_3568 -1.1 -1.6 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5544 -1.1 -4.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1821 -1.1 -1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_6045 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_3672 -1.1 -5.0 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_2413 -1.1 -1.6 FIG074102: hypothetical protein compare
Pf6N2E2_5317 -1.1 -6.4 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_2864 -1.1 -1.6 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2018 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_3040 -1.1 -3.6 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_1602 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_1412 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_4171 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_295 -1.0 -2.3 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_3255 -1.0 -2.1 YrbA protein compare
Pf6N2E2_1824 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_5749 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_1480 -1.0 -3.5 SAM-dependent methyltransferases compare
Pf6N2E2_5321 -1.0 -4.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_1545 -1.0 -2.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_156 -1.0 -1.1 Carbon storage regulator compare
Pf6N2E2_3794 -1.0 -3.2 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_5300 -1.0 -6.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_734 -1.0 -2.2 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1443 -1.0 -2.5 putative aldo/keto reductase compare
Pf6N2E2_3569 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2390 -1.0 -1.5 FIG00959101: hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For stress Sodium antimonate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium antimonate across organisms