Experiment set6IT057 for Bifidobacterium breve UCC2003
reconstituted MRS with Lacto-N-tetraose 7.1 mM
Group: carbon sourceMedia: reconstituted MRS + Lacto-N-tetraose (7.1 mM), pH=6.8
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 7/16/2020
Specific Phenotypes
For 3 genes in this experiment
For carbon source Lacto-N-tetraose in Bifidobacterium breve UCC2003
For carbon source Lacto-N-tetraose across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Other glycan degradation
- Nucleotide sugars metabolism
- Aminosugars metabolism
- Glycosaminoglycan degradation
- Glycosphingolipid biosynthesis - ganglio series
- Galactose metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - globo series
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lactose degradation III | 1 | 1 | 1 |
| N-acetylglucosamine degradation I | 2 | 2 | 1 |
| xyloglucan degradation II (exoglucanase) | 8 | 3 | 3 |
| N-acetylglucosamine degradation II | 3 | 3 | 1 |
| chitin degradation II (Vibrio) | 6 | 3 | 2 |
| superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation | 6 | 4 | 1 |
| UDP-N-acetyl-D-galactosamine biosynthesis II | 7 | 5 | 1 |
| chitin degradation III (Serratia) | 7 | 3 | 1 |
| chitin degradation I (archaea) | 7 | 2 | 1 |
| chitin derivatives degradation | 8 | 3 | 1 |
| peptidoglycan recycling II | 10 | 1 | 1 |
| peptidoglycan recycling I | 14 | 7 | 1 |
| superpathway of N-acetylneuraminate degradation | 22 | 17 | 1 |