Experiment set6IT056 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
AO356_13405 -6.2 -8.5 methionine biosynthesis protein MetW compare
AO356_21405 -5.9 -5.7 3-isopropylmalate dehydratase compare
AO356_14435 -5.7 -5.6 anthranilate phosphoribosyltransferase compare
AO356_08635 -5.7 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21440 -5.6 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_18325 -5.6 -12.0 argininosuccinate synthase compare
AO356_16175 -5.6 -5.4 acetolactate synthase 3 regulatory subunit compare
AO356_14440 -5.6 -5.4 indole-3-glycerol-phosphate synthase compare
AO356_13410 -5.5 -11.3 homoserine O-acetyltransferase compare
AO356_09815 -5.3 -8.1 imidazoleglycerol-phosphate dehydratase compare
AO356_14420 -5.3 -15.9 anthranilate synthase compare
AO356_09800 -5.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_21415 -5.1 -11.9 3-isopropylmalate dehydrogenase compare
AO356_21465 -5.0 -4.9 amidophosphoribosyltransferase compare
AO356_09520 -5.0 -6.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_12520 -5.0 -3.5 orotate phosphoribosyltransferase compare
AO356_06965 -5.0 -9.0 histidinol dehydrogenase compare
AO356_13250 -5.0 -10.1 dihydroxy-acid dehydratase compare
AO356_12525 -4.9 -10.9 acetylglutamate kinase compare
AO356_18275 -4.9 -13.7 ornithine carbamoyltransferase compare
AO356_09375 -4.8 -24.0 glutamate synthase compare
AO356_21400 -4.8 -6.4 isopropylmalate isomerase compare
AO356_09525 -4.7 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_13085 -4.7 -11.5 N-acetylglutamate synthase compare
AO356_09810 -4.7 -7.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_13605 -4.6 -8.9 5,10-methylenetetrahydrofolate reductase compare
AO356_19090 -4.6 -4.4 phosphoribosylaminoimidazole synthetase compare
AO356_19795 -4.5 -3.1 glycerol-3-phosphate dehydrogenase compare
AO356_17520 -4.5 -3.1 phosphoribosylformylglycinamidine synthase compare
AO356_06970 -4.4 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09370 -4.3 -12.3 glutamate synthase compare
AO356_16170 -4.3 -12.3 acetolactate synthase 3 catalytic subunit compare
AO356_08735 -4.2 -15.3 phosphoserine phosphatase compare
AO356_16180 -4.1 -14.6 ketol-acid reductoisomerase compare
AO356_10915 -4.1 -10.3 tryptophan synthase subunit beta compare
AO356_06550 -4.1 -10.2 2-isopropylmalate synthase compare
AO356_12020 -4.0 -15.2 pyruvate carboxylase subunit A compare
AO356_21470 -4.0 -7.5 O-succinylhomoserine sulfhydrylase compare
AO356_10910 -4.0 -10.3 tryptophan synthase subunit alpha compare
AO356_16075 -4.0 -5.4 Fis family transcriptional regulator compare
AO356_05160 -4.0 -9.0 glucose-6-phosphate dehydrogenase compare
AO356_10340 -3.9 -13.7 phosphoserine phosphatase compare
AO356_12780 -3.8 -8.3 argininosuccinate lyase compare
AO356_17830 -3.7 -7.4 pyruvate kinase compare
AO356_22200 -3.7 -10.4 sirohydrochlorin ferrochelatase compare
AO356_12025 -3.7 -13.7 pyruvate carboxylase subunit B compare
AO356_14295 -3.5 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_15165 -3.4 -4.0 protein cII compare
AO356_12015 -3.4 -12.5 LysR family transcriptional regulator compare
AO356_09795 -3.4 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_00555 -3.3 -12.0 sulfite reductase compare
AO356_16050 -3.2 -4.4 glucose-6-phosphate isomerase compare
AO356_14430 -3.2 -6.9 anthranilate synthase compare
AO356_00560 -3.2 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_02175 -3.2 -8.3 transaldolase compare
AO356_17950 -3.1 -11.6 histidine kinase compare
AO356_14135 -3.1 -15.8 biotin synthase compare
AO356_11315 -3.0 -2.0 shikimate dehydrogenase compare
AO356_27180 -3.0 -6.4 hypothetical protein compare
AO356_19045 -2.9 -13.8 chemotaxis protein CheY compare
AO356_05225 -2.9 -6.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_00355 -2.8 -7.6 chemotaxis protein CheY compare
AO356_19085 -2.7 -7.8 phosphoribosylglycinamide formyltransferase compare
AO356_07910 -2.6 -2.5 exodeoxyribonuclease V subunit alpha compare
AO356_21330 -2.6 -10.8 aromatic amino acid aminotransferase compare
AO356_22795 -2.5 -5.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_15815 -2.5 -2.4 gamma-glutamyl kinase compare
AO356_10300 -2.3 -2.8 3-phosphoglycerate dehydrogenase compare
AO356_07370 -2.2 -5.2 nicotinate-nucleotide pyrophosphorylase compare
AO356_17890 -2.2 -3.5 H-NS histone compare
AO356_08905 -2.2 -4.1 glycosyl transferase compare
AO356_24845 -2.2 -3.9 ATPase compare
AO356_03350 -2.1 -8.3 glycosyl transferase compare
AO356_07480 -2.1 -3.5 carbamoyl phosphate synthase large subunit compare
AO356_01745 -2.0 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_10585 -2.0 -11.1 hypothetical protein compare
AO356_18730 -2.0 -9.4 arginine N-succinyltransferase compare
AO356_07915 -2.0 -3.9 exodeoxyribonuclease V subunit beta compare
AO356_06960 -1.9 -6.7 histidinol-phosphate aminotransferase compare
AO356_05670 -1.8 -3.8 recombinase RecA compare
AO356_02190 -1.8 -7.3 hypothetical protein compare
AO356_06995 -1.8 -5.9 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_03775 -1.8 -2.3 flagellar assembly protein FliO compare
AO356_20830 -1.7 -4.0 phosphoadenosine phosphosulfate reductase compare
AO356_07390 -1.7 -2.7 polyribonucleotide nucleotidyltransferase compare
AO356_18145 -1.7 -7.4 quinolinate synthase A compare
AO356_14140 -1.6 -9.4 8-amino-7-oxononanoate synthase compare
AO356_12005 -1.6 -9.8 transcriptional regulator compare
AO356_13570 -1.6 -7.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_12380 -1.6 -5.7 ATP-dependent DNA helicase RecG compare
AO356_14155 -1.6 -7.1 dethiobiotin synthetase compare
AO356_12900 -1.6 -4.3 exopolyphosphatase compare
AO356_27230 -1.5 -4.4 hypothetical protein compare
AO356_08585 -1.4 -3.7 50S ribosomal protein L9 compare
AO356_27210 -1.4 -7.1 hypothetical protein compare
AO356_05055 -1.4 -5.5 permease DsdX compare
AO356_06385 -1.4 -3.4 recombinase XerD compare
AO356_18020 -1.4 -3.7 ATP-dependent DNA helicase RuvA compare
AO356_06575 -1.4 -3.4 outer membrane protein assembly factor BamB compare
AO356_07005 -1.4 -1.8 ABC transporter ATP-binding protein compare
AO356_21685 -1.4 -2.6 hypothetical protein compare
AO356_14150 -1.4 -7.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_27250 -1.3 -3.4 hypothetical protein compare
AO356_13485 -1.3 -2.6 chemotaxis protein CheY compare
AO356_27215 -1.3 -2.9 hypothetical protein compare
AO356_21410 -1.3 -2.4 SAM-dependent methyltransferase compare
AO356_16070 -1.2 -5.3 poly(A) polymerase compare
AO356_10000 -1.2 -4.7 hypothetical protein compare
AO356_06990 -1.2 -4.2 toluene tolerance protein compare
AO356_07000 -1.2 -2.7 ABC transporter permease compare
AO356_01750 -1.1 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO356_27245 -1.1 -1.2 hypothetical protein compare
AO356_28825 -1.1 -3.1 histidine kinase compare
AO356_08610 -1.1 -4.7 exoribonuclease R compare
AO356_10075 -1.1 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_14145 -1.1 -4.9 transporter compare
AO356_05060 -1.1 -2.6 gluconokinase compare
AO356_10330 -1.1 -8.1 threonine dehydratase compare
AO356_21435 -1.1 -3.8 pseudouridine synthase compare
AO356_19050 -1.0 -2.7 cysteine synthase compare
AO356_27205 -1.0 -4.8 hypothetical protein compare
AO356_20155 -1.0 -4.8 phosphate acyltransferase compare
AO356_24580 -1.0 -4.4 GntR family transcriptional regulator compare
AO356_07920 -1.0 -4.2 exodeoxyribonuclease V subunit gamma compare
AO356_18775 -1.0 -2.7 aspartate kinase compare
AO356_00530 -1.0 -3.2 precorrin-4 C11-methyltransferase compare
AO356_21460 -1.0 -1.4 colicin V production CvpA compare
AO356_21125 -1.0 -3.4 cyclic peptide transporter compare
AO356_22950 -0.9 -0.9 peptidylprolyl isomerase compare
AO356_12990 -0.9 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
AO356_19150 -0.9 -4.4 cobalamin biosynthesis protein CobD compare
AO356_26350 -0.9 -2.3 acetyl-CoA acetyltransferase compare
AO356_05215 -0.9 -4.6 glucokinase compare
AO356_11055 -0.9 -2.8 long-chain acyl-CoA thioester hydrolase compare
AO356_06065 -0.9 -2.4 ArsC family transcriptional regulator compare
AO356_12725 -0.9 -2.6 recombinase XerC compare
AO356_04580 -0.9 -6.8 L-aspartate oxidase compare
AO356_13700 -0.9 -2.8 hypothetical protein compare
AO356_03435 -0.9 -2.7 integration host factor subunit beta compare
AO356_03810 -0.9 -2.5 anti-anti-sigma factor compare
AO356_28090 -0.8 -1.2 ABC transporter ATP-binding protein compare
AO356_08985 -0.8 -0.9 hypothetical protein compare
AO356_11675 -0.8 -4.3 chromosome partitioning protein compare
AO356_02315 -0.8 -2.6 DNA topoisomerase I compare
AO356_00520 -0.8 -2.1 cobalt transporter compare
AO356_29965 -0.8 -2.3 2-polyprenyl-6-methoxyphenol hydroxylase compare
AO356_05010 -0.8 -5.2 diguanylate cyclase compare
AO356_20175 -0.8 -1.5 3-oxoacyl-ACP synthase compare
AO356_10005 -0.8 -5.5 branched-chain amino acid permease (azaleucine resistance) compare
AO356_18855 -0.8 -1.6 hypothetical protein compare
AO356_28050 -0.8 -1.6 cytochrome c-550 PedF compare
AO356_21320 -0.8 -1.1 tRNA-Asn compare
AO356_25865 -0.8 -1.4 peroxidase compare
AO356_05630 -0.8 -2.1 LysR family transcriptional regulator compare
AO356_19135 -0.8 -2.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_30040 -0.8 -3.0 formyltetrahydrofolate deformylase compare
AO356_01970 -0.8 -4.2 phage capsid protein compare
AO356_18555 -0.7 -2.2 peptidase M4 compare
AO356_00545 -0.7 -5.1 methionine synthase compare
AO356_12825 -0.7 -1.3 hypothetical protein compare
AO356_08890 -0.7 -4.5 glycosyltransferase compare
AO356_04575 -0.7 -4.7 RNA polymerase subunit sigma compare
AO356_19165 -0.7 -2.4 adenosylcobinamide kinase compare
AO356_02250 -0.7 -4.3 pyridine nucleotide-disulfide oxidoreductase compare
AO356_11680 -0.7 -1.2 chromosome partitioning protein ParB compare
AO356_18515 -0.7 -2.4 pseudouridine synthase compare
AO356_19180 -0.7 -3.5 cobalamin synthase compare
AO356_18735 -0.7 -3.1 arginine N-succinyltransferase compare
AO356_09325 -0.7 -2.4 type II secretion system protein GspH compare
AO356_28520 -0.7 -2.3 multidrug MFS transporter compare
AO356_01555 -0.7 -4.1 acyl-CoA dehydrogenase compare
AO356_05760 -0.7 -2.0 phage tail protein compare
AO356_09145 -0.7 -1.9 acyl carrier protein compare
AO356_00500 -0.7 -2.5 magnesium chelatase compare
AO356_18685 -0.7 -3.1 heme utilization protein compare
AO356_08290 -0.7 -1.3 precorrin-6Y C5,15-methyltransferase compare
AO356_16670 -0.7 -5.1 adenylylsulfate kinase compare
AO356_18780 -0.7 -1.2 carbon storage regulator compare
AO356_18025 -0.7 -1.2 ATP-dependent DNA helicase RuvB compare
AO356_19160 -0.7 -3.6 cobyric acid synthase compare
AO356_00525 -0.7 -1.7 cobalamin biosynthesis protein CobE compare
AO356_29355 -0.7 -1.2 hypothetical protein compare
AO356_15860 -0.7 -1.6 general secretion pathway protein GspH compare
AO356_24250 -0.7 -3.2 ABC transporter ATP-binding protein compare
AO356_18695 -0.6 -5.7 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO356_29420 -0.6 -2.4 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_08975 -0.6 -4.5 diguanylate cyclase compare
AO356_23250 -0.6 -2.1 hypothetical protein compare
AO356_23990 -0.6 -1.4 amino acid ABC transporter compare
AO356_10935 -0.6 -1.7 hypothetical protein compare
AO356_26040 -0.6 -0.9 hypothetical protein compare
AO356_17065 -0.6 -1.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_19835 -0.6 -1.4 histidine kinase compare
AO356_08215 -0.6 -3.3 tRNA-dihydrouridine synthase B compare
AO356_26730 -0.6 -1.6 cupin compare
AO356_02325 -0.6 -1.3 3-ketoacyl-CoA thiolase compare
AO356_29100 -0.6 -1.8 epimerase compare
AO356_28015 -0.6 -2.4 histidine kinase compare
AO356_03995 -0.6 -4.2 potassium transporter TrkH compare
AO356_11990 -0.6 -4.3 DNA helicase II compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms