Experiment set6IT054 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB 30C

200 most important genes:

  gene name fitness t score description  
AO353_14220 -4.1 -2.8 ribosomal large subunit pseudouridine synthase D compare
AO353_00430 -4.0 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13100 -3.5 -3.4 GTPase RsgA compare
AO353_00825 -3.2 -6.8 porin compare
AO353_18540 -3.0 -3.5 pseudouridine synthase compare
AO353_12345 -2.6 -3.1 twin-arginine protein translocation system subunit TatC compare
AO353_12115 -2.4 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03615 -2.4 -5.0 cold-shock protein compare
AO353_14150 -2.3 -2.7 peptidylprolyl isomerase compare
AO353_07355 -2.3 -8.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15250 -2.3 -4.3 cytochrome B compare
AO353_03710 -2.1 -4.5 formyltetrahydrofolate deformylase compare
AO353_10445 -2.0 -2.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_12500 -1.9 -2.5 shikimate kinase compare
AO353_14400 -1.8 -5.2 Fis family transcriptional regulator compare
AO353_14420 -1.8 -5.6 molecular chaperone DnaK compare
AO353_06040 -1.8 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_08115 -1.8 -6.8 energy transducer TonB compare
AO353_21625 -1.8 -2.4 Fe/S biogenesis protein NfuA compare
AO353_14495 -1.7 -10.4 acetolactate synthase 3 catalytic subunit compare
AO353_00650 -1.7 -3.7 cytochrome biogenesis protein compare
AO353_19360 -1.7 -2.7 peroxiredoxin compare
AO353_09720 -1.7 -1.5 hypothetical protein compare
AO353_11165 -1.7 -8.4 hypothetical protein compare
AO353_00495 -1.7 -2.8 DNA topoisomerase I compare
AO353_03670 -1.7 -5.5 ornithine acetyltransferase compare
AO353_04355 -1.6 -2.9 homoserine dehydrogenase compare
AO353_03585 -1.6 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_13160 -1.6 -3.0 membrane protease HflC compare
AO353_03795 -1.5 -4.2 fumarate hydratase compare
AO353_06050 -1.5 -6.6 exodeoxyribonuclease V subunit gamma compare
AO353_11730 -1.5 -8.6 glutamate--cysteine ligase compare
AO353_05420 -1.5 -2.2 peptide chain release factor 3 compare
AO353_14500 -1.4 -5.9 acetolactate synthase 3 regulatory subunit compare
AO353_07075 -1.4 -4.5 elongation factor Tu compare
AO353_07105 -1.4 -1.8 biotin--protein ligase compare
AO353_01410 -1.4 -3.0 ribonuclease E compare
AO353_12090 -1.4 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07315 -1.4 -2.9 rRNA methyltransferase compare
AO353_08265 -1.4 -5.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_07155 -1.4 -6.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_03590 -1.4 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_06045 -1.3 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_04175 -1.3 -4.7 glycerol uptake facilitator GlpF compare
AO353_15905 -1.3 -5.8 outer membrane protein assembly factor BamB compare
AO353_00510 -1.3 -3.7 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_14775 -1.3 -5.7 hypothetical protein compare
AO353_14740 -1.3 -3.3 GTP-binding protein compare
AO353_05690 -1.3 -3.4 SsrA-binding protein compare
AO353_10725 -1.2 -1.6 dodecin flavoprotein compare
AO353_13225 -1.2 -2.9 50S ribosomal protein L9 compare
AO353_16805 -1.2 -5.1 recombinase RecA compare
AO353_09000 -1.2 -4.8 argininosuccinate lyase compare
AO353_11530 -1.2 -6.1 diguanylate cyclase compare
AO353_12930 -1.2 -2.6 GlcNAc-PI de-N-acetylase compare
AO353_22920 -1.2 -4.3 GntR family transcriptional regulator compare
AO353_05240 -1.2 -2.7 rod shape-determining protein MreD compare
AO353_02070 -1.2 -5.2 prephenate dehydratase compare
AO353_15875 -1.2 -3.3 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_09240 -1.2 -3.0 acetylglutamate kinase compare
AO353_19145 -1.2 -3.8 protease HtpX compare
AO353_29005 -1.1 -2.8 hypothetical protein compare
AO353_13925 -1.1 -2.4 XRE family transcriptional regulator compare
AO353_15385 -1.1 -2.5 hypothetical protein compare
AO353_10670 -1.1 -5.2 shikimate dehydrogenase compare
AO353_05625 -1.1 -1.4 transcription elongation factor GreA compare
AO353_27720 -1.1 -4.3 cupin compare
AO353_08165 -1.1 -2.2 pyrroline-5-carboxylate reductase compare
AO353_23495 -1.1 -1.9 SAM-dependent methyltransferase compare
AO353_06720 -1.1 -1.5 NrdR family transcriptional regulator compare
AO353_20175 -1.1 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_00750 -1.1 -3.0 GntR family transcriptional regulator compare
AO353_12130 -1.1 -4.2 preprotein translocase subunit SecB compare
AO353_14940 -1.0 -2.4 malate:quinone oxidoreductase compare
AO353_16940 -1.0 -3.8 deoxycytidine triphosphate deaminase compare
AO353_18715 -1.0 -1.9 histidine kinase compare
AO353_04520 -1.0 -3.7 elongation factor 4 compare
AO353_09045 -1.0 -2.0 hypothetical protein compare
AO353_15445 -1.0 -2.7 disulfide bond formation protein B compare
AO353_10950 -1.0 -6.0 thiol:disulfide interchange protein compare
AO353_02000 -1.0 -2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_09505 -1.0 -3.0 hypothetical protein compare
AO353_09875 -1.0 -1.0 hypothetical protein compare
AO353_11770 -1.0 -1.6 molecular chaperone Hsp33 compare
AO353_24535 -1.0 -1.9 hypothetical protein compare
AO353_15555 -0.9 -3.3 fumarylacetoacetase compare
AO353_01375 -0.9 -4.6 phosphate acyltransferase compare
AO353_27090 -0.9 -1.3 hypothetical protein compare
AO353_17675 -0.9 -4.1 hypothetical protein compare
AO353_21100 -0.9 -2.3 DNA-binding protein compare
AO353_20565 -0.9 -1.9 tRNA-Ala compare
AO353_23215 -0.9 -3.1 calpastatin compare
AO353_20865 -0.9 -1.8 cold-shock protein compare
AO353_09890 -0.9 -2.9 phosphate ABC transporter ATP-binding protein compare
AO353_14370 -0.9 -3.7 glucose-6-phosphate isomerase compare
AO353_06850 -0.9 -3.3 MFS transporter compare
AO353_02250 -0.9 -2.5 chorismate synthase compare
AO353_08685 -0.9 -5.0 N-acetylglutamate synthase compare
AO353_27160 -0.9 -2.5 Pathogenicity locus compare
AO353_09040 -0.9 -1.6 diaminopimelate epimerase compare
AO353_23410 -0.9 -1.3 hypothetical protein compare
AO353_00635 -0.9 -2.1 hypothetical protein compare
AO353_11060 -0.8 -3.2 holliday junction resolvasome, helicase subunit compare
AO353_13460 -0.8 -3.0 phosphate starvation-inducible protein PsiF compare
AO353_18305 -0.8 -2.3 RNA helicase compare
AO353_09250 -0.8 -2.1 exodeoxyribonuclease III compare
AO353_07460 -0.8 -2.3 DNA-binding protein compare
AO353_13580 -0.8 -2.4 copper resistance protein CopZ compare
AO353_04190 -0.8 -1.5 glycerol-3-phosphate dehydrogenase compare
AO353_24130 -0.8 -1.7 hypothetical protein compare
AO353_06415 -0.8 -2.9 hypothetical protein compare
AO353_26655 -0.8 -3.0 branched-chain amino acid aminotransferase compare
AO353_03520 -0.8 -2.1 hypothetical protein compare
AO353_12880 -0.8 -1.3 ADP-heptose--LPS heptosyltransferase compare
AO353_26240 -0.8 -1.8 hypothetical protein compare
AO353_13200 -0.8 -5.2 exoribonuclease R compare
AO353_22685 -0.8 -2.8 peroxidase compare
AO353_22860 -0.8 -4.7 cytochrome C oxidase Cbb3 compare
AO353_01220 -0.8 -1.3 hypothetical protein compare
AO353_06585 -0.8 -3.7 hypothetical protein compare
AO353_08545 -0.8 -3.0 thiol-disulfide isomerase compare
AO353_10455 -0.8 -1.2 tRNA modification GTPase MnmE compare
AO353_00515 -0.8 -1.9 hypothetical protein compare
AO353_07495 -0.8 -5.6 acyl-CoA dehydrogenase compare
AO353_27925 -0.8 -2.0 hypothetical protein compare
AO353_18505 -0.8 -1.4 translation initiation factor 2 compare
AO353_23950 -0.8 -1.8 hypothetical protein compare
AO353_02600 -0.7 -1.5 alpha-ribazole phosphatase compare
AO353_17250 -0.7 -2.5 nitrile hydratase compare
AO353_14395 -0.7 -2.1 poly(A) polymerase compare
AO353_28425 -0.7 -2.4 TetR family transcriptional regulator compare
AO353_20170 -0.7 -2.7 trigger factor compare
AO353_13575 -0.7 -2.5 hypothetical protein compare
AO353_18890 -0.7 -2.8 cytochrome C compare
AO353_13570 -0.7 -5.3 TonB-dependent receptor compare
AO353_28390 -0.7 -2.6 hypothetical protein compare
AO353_01975 -0.7 -4.1 glycosyl transferase compare
AO353_12420 -0.7 -2.3 predicted FeS cluster maintenance protein (from data) compare
AO353_19060 -0.7 -2.5 CysB family transcriptional regulator compare
AO353_04220 -0.7 -2.6 chemotaxis protein CheY compare
AO353_08110 -0.7 -2.9 glutathione synthetase compare
AO353_15785 -0.7 -3.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_09945 -0.7 -2.4 LysR family transcriptional regulator compare
AO353_13590 -0.7 -2.3 cobalt-precorrin-6X reductase compare
AO353_26195 -0.7 -1.4 hypothetical protein compare
AO353_13140 -0.7 -3.2 tRNA dimethylallyltransferase compare
AO353_00505 -0.7 -2.4 3-ketoacyl-CoA thiolase compare
AO353_13155 -0.7 -2.2 hypothetical protein compare
AO353_16825 -0.7 -3.2 hypothetical protein compare
AO353_08975 -0.7 -3.0 heme biosynthesis protein HemY compare
AO353_10875 -0.7 -3.2 copper-binding protein compare
AO353_15185 -0.7 -2.6 ATPase compare
AO353_20345 -0.7 -3.6 methylcrotonoyl-CoA carboxylase compare
AO353_08980 -0.7 -2.0 heme biosynthesis operon protein HemX compare
AO353_00860 -0.7 -2.0 EstX protein compare
AO353_20350 -0.7 -3.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
AO353_17870 -0.7 -2.6 NADH dehydrogenase compare
AO353_13070 -0.7 -3.6 phosphoserine phosphatase compare
AO353_14485 -0.7 -1.3 pseudouridine synthase compare
AO353_10710 -0.7 -3.0 tryptophan synthase subunit beta compare
AO353_07515 -0.7 -1.3 transporter compare
AO353_21425 -0.7 -2.7 hypothetical protein compare
AO353_04565 -0.7 -3.0 nucleoid-associated protein compare
AO353_22985 -0.7 -2.1 hypothetical protein compare
AO353_05550 -0.7 -3.3 pseudouridine synthase compare
AO353_04230 -0.7 -1.8 chemotaxis protein CheW compare
AO353_03830 -0.6 -1.7 antibiotic biosynthesis monooxygenase compare
AO353_00025 -0.6 -2.6 phenazine biosynthesis protein PhzF compare
AO353_27650 -0.6 -2.5 cell division protein FtsK compare
AO353_20340 -0.6 -2.3 gamma-carboxygeranoyl-CoA hydratase compare
AO353_26090 -0.6 -1.4 hypothetical protein compare
AO353_14405 -0.6 -4.4 ATPase compare
AO353_13220 -0.6 -3.1 hypothetical protein compare
AO353_12950 -0.6 -3.8 polymerase compare
AO353_23590 -0.6 -1.4 ArsR family transcriptional regulator compare
AO353_02940 -0.6 -1.3 DNA-binding protein compare
AO353_00160 -0.6 -2.2 hypothetical protein compare
AO353_13685 -0.6 -2.1 3-dehydroquinate dehydratase compare
AO353_01615 -0.6 -2.6 pilus assembly protein PilA compare
AO353_18425 -0.6 -2.4 hypothetical protein compare
AO353_08640 -0.6 -1.5 hypothetical protein compare
AO353_00310 -0.6 -4.1 transaldolase compare
AO353_09670 -0.6 -2.4 hypothetical protein compare
AO353_17885 -0.6 -1.3 hypothetical protein compare
AO353_01985 -0.6 -4.0 hypothetical protein compare
AO353_00835 -0.6 -2.8 transporter compare
AO353_20590 -0.6 -1.5 hydrolase compare
AO353_08015 -0.6 -2.7 5,10-methylenetetrahydrofolate reductase compare
AO353_19240 -0.6 -3.1 pseudouridine synthase compare
AO353_05125 -0.6 -2.3 BolA family transcriptional regulator compare
AO353_00665 -0.6 -1.3 adenine phosphoribosyltransferase compare
AO353_23220 -0.6 -1.2 hypothetical protein compare
AO353_02100 -0.6 -2.0 phosphoglycolate phosphatase compare
AO353_09315 -0.6 -3.5 LysR family transcriptional regulator compare
AO353_07910 -0.6 -0.9 hypothetical protein compare
AO353_20835 -0.6 -2.0 Ribokinase (EC 2.7.1.15) (from data) compare
AO353_01355 -0.6 -3.4 3-oxoacyl-ACP synthase compare
AO353_10055 -0.6 -4.1 DNA helicase II compare
AO353_24000 -0.6 -2.2 isochorismate synthase compare
AO353_10930 -0.6 -3.1 DNA polymerase I compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in temperature experiments