Experiment set6IT054 for Burkholderia phytofirmans PsJN

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.2 -4.9 phosphoglycerate kinase compare
BPHYT_RS17680 -6.9 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17670 -6.6 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17690 -6.1 -13.0 imidazole glycerol phosphate synthase compare
BPHYT_RS03150 -6.1 -16.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33880 -6.0 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16835 -6.0 -8.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17685 -5.9 -10.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS18320 -5.7 -12.7 orotate phosphoribosyltransferase compare
BPHYT_RS15920 -5.5 -12.2 argininosuccinate synthase compare
BPHYT_RS14915 -5.5 -8.9 phosphoserine aminotransferase compare
BPHYT_RS17675 -5.4 -2.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS08955 -5.4 -5.2 homoserine dehydrogenase compare
BPHYT_RS33835 -5.3 -9.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15915 -5.2 -11.1 ornithine carbamoyltransferase compare
BPHYT_RS06405 -5.2 -8.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS33915 -5.1 -8.5 isopropylmalate isomerase compare
BPHYT_RS09515 -5.1 -3.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17855 -4.9 -17.1 glutamate synthase compare
BPHYT_RS04955 -4.9 -2.6 methionyl-tRNA synthetase compare
BPHYT_RS06545 -4.9 -11.2 acetolactate synthase compare
BPHYT_RS17890 -4.8 -3.1 shikimate kinase compare
BPHYT_RS03480 -4.8 -7.4 ferritin compare
BPHYT_RS14190 -4.8 -11.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS01590 -4.8 -6.0 methionine biosynthesis protein MetW compare
BPHYT_RS16245 -4.7 -7.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17400 -4.7 -10.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS06555 -4.7 -6.8 ketol-acid reductoisomerase compare
BPHYT_RS05225 -4.6 -9.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS05010 -4.6 -5.0 RpiR family transcriptional regulator compare
BPHYT_RS06900 -4.6 -7.7 aspartate aminotransferase compare
BPHYT_RS17390 -4.6 -16.9 anthranilate synthase subunit I compare
BPHYT_RS03645 -4.6 -3.1 tRNA dimethylallyltransferase compare
BPHYT_RS17885 -4.6 -7.0 3-dehydroquinate synthase compare
BPHYT_RS16735 -4.6 -8.2 phosphogluconate dehydratase compare
BPHYT_RS33900 -4.6 -14.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS14895 -4.6 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14910 -4.5 -10.6 chorismate mutase compare
BPHYT_RS05025 -4.5 -4.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS01595 -4.4 -8.5 homoserine O-acetyltransferase compare
BPHYT_RS17395 -4.3 -3.3 anthranilate synthase subunit II compare
BPHYT_RS16905 -4.3 -5.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS04965 -4.3 -9.5 ATP-binding protein compare
BPHYT_RS04740 -4.2 -8.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS09500 -4.1 -9.9 glucose-6-phosphate isomerase compare
BPHYT_RS06610 -4.1 -2.0 triosephosphate isomerase compare
BPHYT_RS12845 -4.1 -16.9 ATPase compare
BPHYT_RS33875 -4.0 -5.9 tryptophan synthase subunit alpha compare
BPHYT_RS13705 -4.0 -5.6 chorismate synthase compare
BPHYT_RS16840 -4.0 -3.8 transketolase compare
BPHYT_RS04725 -3.9 -9.5 sulfite reductase compare
BPHYT_RS08960 -3.9 -3.4 threonine synthase compare
BPHYT_RS17715 -3.9 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS14845 -3.9 -3.7 cysteine synthase compare
BPHYT_RS12530 -3.8 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33840 -3.8 -6.0 amidophosphoribosyltransferase compare
BPHYT_RS03640 -3.7 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS15710 -3.7 -3.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16255 -3.7 -3.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS33645 -3.7 -4.9 homoserine kinase compare
BPHYT_RS04720 -3.6 -6.8 transcriptional regulator compare
BPHYT_RS02610 -3.6 -5.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS05020 -3.5 -7.5 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS02590 -3.5 -5.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS08850 -3.5 -2.4 transcriptional regulator compare
BPHYT_RS06045 -3.5 -8.8 transaldolase compare
BPHYT_RS06685 -3.4 -2.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12985 -3.4 -3.2 amino acid acetyltransferase compare
BPHYT_RS10100 -3.3 -6.2 dihydroxy-acid dehydratase compare
BPHYT_RS03535 -3.2 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS05035 -3.2 -5.1 sugar ABC transporter permease compare
BPHYT_RS04730 -3.1 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS18705 -3.0 -2.7 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS33905 -3.0 -1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS03625 -3.0 -11.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS05960 -2.9 -6.9 endoribonuclease L-PSP compare
BPHYT_RS17700 -2.9 -3.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03725 -2.8 -1.7 serine hydroxymethyltransferase compare
BPHYT_RS17405 -2.8 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS17920 -2.7 -2.0 protein CyaY compare
BPHYT_RS16675 -2.7 -1.8 dihydroorotase compare
BPHYT_RS33920 -2.6 -9.5 type II citrate synthase compare
BPHYT_RS05030 -2.6 -2.9 sugar ABC transporter permease compare
BPHYT_RS15670 -2.6 -6.3 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS17380 -2.5 -8.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS09895 -2.5 -1.8 LysR family transcriptional regulator compare
BPHYT_RS10850 -2.5 -2.1 LysR family transcriptional regulator compare
BPHYT_RS08565 -2.5 -1.2 dihydroorotate dehydrogenase compare
BPHYT_RS02570 -2.4 -9.6 phosphocarrier protein HPr compare
BPHYT_RS22815 -2.4 -3.1 TonB-denpendent receptor compare
BPHYT_RS04745 -2.4 -4.5 sulfate adenylyltransferase compare
BPHYT_RS14855 -2.4 -3.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02905 -2.3 -17.1 RNA polymerase subunit sigma-54 compare
BPHYT_RS12840 -2.3 -5.2 pyruvate dehydrogenase compare
BPHYT_RS12150 -2.2 -12.5 PII uridylyl-transferase compare
BPHYT_RS35885 -2.1 -5.5 hypothetical protein compare
BPHYT_RS09145 -2.0 -8.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12465 -2.0 -3.2 inositol monophosphatase compare
BPHYT_RS26965 -2.0 -1.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS21485 -1.9 -1.4 hypothetical protein compare
BPHYT_RS17095 -1.9 -4.0 proline--tRNA ligase compare
BPHYT_RS06410 -1.9 -2.3 transcriptional regulator compare
BPHYT_RS28705 -1.9 -1.6 IclR family transcriptional regulator compare
BPHYT_RS28860 -1.9 -1.3 haloacid dehalogenase compare
BPHYT_RS27495 -1.8 -1.5 hypothetical protein compare
BPHYT_RS14900 -1.8 -3.0 prephenate dehydrogenase compare
BPHYT_RS05040 -1.8 -3.9 sugar ABC transporter ATPase compare
BPHYT_RS03495 -1.8 -5.0 hypothetical protein compare
BPHYT_RS26955 -1.8 -1.4 succinylglutamate desuccinylase compare
BPHYT_RS06375 -1.8 -5.5 ribonuclease compare
BPHYT_RS28075 -1.8 -1.5 cytochrome B561 compare
BPHYT_RS14400 -1.7 -3.9 anti-sigma factor compare
BPHYT_RS03215 -1.7 -3.5 TetR family transcriptional regulator compare
BPHYT_RS07145 -1.7 -1.9 DNA-binding protein compare
BPHYT_RS12935 -1.7 -7.0 chemotaxis protein CheY compare
BPHYT_RS12940 -1.7 -5.1 signal transduction histidine kinase compare
BPHYT_RS13220 -1.7 -5.4 phosphomethylpyrimidine synthase compare
BPHYT_RS08950 -1.7 -4.9 aminotransferase compare
BPHYT_RS19260 -1.6 -1.5 hypothetical protein compare
BPHYT_RS13200 -1.6 -2.1 molybdopterin binding oxidoreductase compare
BPHYT_RS12265 -1.6 -1.6 alanine acetyltransferase compare
BPHYT_RS14195 -1.5 -1.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS28350 -1.5 -2.3 fatty acid desaturase compare
BPHYT_RS17100 -1.5 -5.4 RNA pyrophosphohydrolase compare
BPHYT_RS13470 -1.5 -1.3 arylsulfate sulfotransferase compare
BPHYT_RS07475 -1.5 -2.0 nitrate reductase compare
BPHYT_RS36400 -1.5 -1.1 hypothetical protein compare
BPHYT_RS02760 -1.5 -2.5 cytochrome BD oxidase subunit II compare
BPHYT_RS20840 -1.4 -1.9 beta-lactamase compare
BPHYT_RS15570 -1.4 -6.9 NAD-dependent dehydratase compare
BPHYT_RS06075 -1.4 -4.7 hypothetical protein compare
BPHYT_RS25870 -1.4 -1.1 type III secretion system ATPase compare
BPHYT_RS15620 -1.4 -4.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS30465 -1.4 -1.2 short-chain dehydrogenase compare
BPHYT_RS25370 -1.4 -2.3 acyl-CoA dehydrogenase compare
BPHYT_RS17520 -1.4 -3.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12990 -1.3 -1.3 iron transporter compare
BPHYT_RS36275 -1.3 -1.2 hypothetical protein compare
BPHYT_RS33850 -1.3 -1.8 sporulation protein compare
BPHYT_RS21650 -1.3 -2.8 cobalamin synthesis protein P47K compare
BPHYT_RS23455 -1.3 -1.2 phosphorylase compare
BPHYT_RS09825 -1.3 -1.6 Fe-S protein compare
BPHYT_RS30890 -1.3 -1.4 hypothetical protein compare
BPHYT_RS03570 -1.3 -6.3 heat-inducible transcription repressor HrcA compare
BPHYT_RS05255 -1.3 -2.5 phage abortive infection protein compare
BPHYT_RS26025 -1.3 -1.0 hypothetical protein compare
BPHYT_RS20790 -1.2 -1.7 TetR family transcriptional regulator compare
BPHYT_RS04750 -1.2 -2.7 uroporphyrin-III C-methyltransferase compare
BPHYT_RS12550 -1.2 -1.1 GTP-binding protein HflX compare
BPHYT_RS12815 -1.2 -5.3 IclR family transcriptional regulator compare
BPHYT_RS20590 -1.2 -2.1 methionine sulfoxide reductase A compare
BPHYT_RS28660 -1.2 -0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS02755 -1.2 -1.5 cyd operon protein YbgT compare
BPHYT_RS04335 -1.2 -1.3 membrane protein compare
BPHYT_RS11235 -1.2 -1.2 hypothetical protein compare
BPHYT_RS32260 -1.2 -1.4 hypothetical protein compare
BPHYT_RS04920 -1.1 -1.8 aspartate 1-decarboxylase compare
BPHYT_RS26880 -1.1 -2.0 ketosteroid isomerase compare
BPHYT_RS09330 -1.1 -6.2 phytoene synthase compare
BPHYT_RS30085 -1.1 -1.1 hypothetical protein compare
BPHYT_RS12725 -1.1 -7.3 regulator compare
BPHYT_RS04890 -1.1 -1.6 cobalamin biosynthesis protein CobD compare
BPHYT_RS29100 -1.1 -1.4 ketosteroid isomerase compare
BPHYT_RS18760 -1.1 -2.6 flagellar biosynthesis protein FliT compare
BPHYT_RS02540 -1.1 -1.7 hypothetical protein compare
BPHYT_RS13645 -1.1 -8.6 threonine--tRNA ligase compare
BPHYT_RS35385 -1.1 -1.7 GntR family transcriptional regulator compare
BPHYT_RS33865 -1.1 -5.1 tryptophan synthase alpha chain compare
BPHYT_RS27455 -1.1 -1.7 rod shape-determining protein MreB compare
BPHYT_RS03090 -1.1 -1.0 hypothetical protein compare
BPHYT_RS08125 -1.1 -5.3 ATPase compare
BPHYT_RS28000 -1.1 -1.3 permease compare
BPHYT_RS05420 -1.1 -2.2 glutathione S-transferase compare
BPHYT_RS20115 -1.1 -1.5 transcriptional regulator compare
BPHYT_RS16340 -1.1 -4.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS02770 -1.1 -2.2 membrane protein compare
BPHYT_RS23650 -1.1 -0.9 hypothetical protein compare
BPHYT_RS33030 -1.1 -1.1 hypothetical protein compare
BPHYT_RS11825 -1.1 -1.1 cytosine deaminase compare
BPHYT_RS29485 -1.0 -2.1 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS14585 -1.0 -1.4 hypothetical protein compare
BPHYT_RS17445 -1.0 -3.4 GTP-binding protein YchF compare
BPHYT_RS13885 -1.0 -1.6 myo-inositol 2-dehydrogenase compare
BPHYT_RS23230 -1.0 -1.0 histidine kinase compare
BPHYT_RS07960 -1.0 -1.8 hypothetical protein compare
BPHYT_RS11755 -1.0 -1.9 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS14395 -1.0 -3.9 sugar dehydratase compare
BPHYT_RS10125 -1.0 -1.7 hypothetical protein compare
BPHYT_RS14180 -1.0 -2.4 membrane protein compare
BPHYT_RS25450 -1.0 -1.3 membrane protein compare
BPHYT_RS04820 -1.0 -4.7 LysR family transcriptional regulator compare
BPHYT_RS05320 -1.0 -1.1 beta-lactamase compare
BPHYT_RS09160 -1.0 -3.7 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS25845 -1.0 -1.1 RND transporter MFP subunit compare
BPHYT_RS07325 -1.0 -0.9 GntR family transcriptional regulator compare
BPHYT_RS12510 -1.0 -1.8 RNA-binding protein compare
BPHYT_RS30990 -1.0 -1.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS21215 -1.0 -3.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS28440 -1.0 -2.1 heat shock Hsp20 compare
BPHYT_RS08945 -1.0 -3.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in carbon source experiments

For carbon source D-Glucose across organisms