Experiment set6IT053 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Inosine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO356_08365 -6.8 -4.7 Urease maturation and nickel insertion protein UreD (from data) compare
AO356_09730 -6.3 -4.4 nitrogen regulation protein NR(I) compare
AO356_09815 -5.9 -5.8 imidazoleglycerol-phosphate dehydratase compare
AO356_09520 -5.8 -4.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_14435 -5.7 -5.6 anthranilate phosphoribosyltransferase compare
AO356_21440 -5.7 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_21405 -5.7 -5.5 3-isopropylmalate dehydratase compare
AO356_14440 -5.5 -5.4 indole-3-glycerol-phosphate synthase compare
AO356_08905 -5.4 -3.7 glycosyl transferase compare
AO356_08370 -5.4 -5.2 urease subunit gamma compare
AO356_09810 -5.2 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_09725 -5.2 -8.7 histidine kinase compare
AO356_16690 -5.1 -7.6 peptidylprolyl isomerase conserved
AO356_12520 -5.0 -3.5 orotate phosphoribosyltransferase compare
AO356_08390 -5.0 -13.0 Urease (EC 3.5.1.5) (from data) conserved
AO356_13410 -5.0 -13.2 homoserine O-acetyltransferase compare
AO356_13085 -4.9 -11.3 N-acetylglutamate synthase compare
AO356_14430 -4.9 -9.3 anthranilate synthase compare
AO356_14420 -4.8 -16.1 anthranilate synthase compare
AO356_18325 -4.8 -14.1 argininosuccinate synthase compare
AO356_12525 -4.8 -11.1 acetylglutamate kinase compare
AO356_08635 -4.7 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_09375 -4.7 -24.3 glutamate synthase compare
AO356_13250 -4.6 -11.2 dihydroxy-acid dehydratase compare
AO356_09525 -4.6 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_08450 -4.6 -8.8 urease accessory protein UreE conserved
AO356_18275 -4.6 -14.0 ornithine carbamoyltransferase compare
AO356_10915 -4.5 -10.8 tryptophan synthase subunit beta compare
AO356_16170 -4.5 -11.3 acetolactate synthase 3 catalytic subunit compare
AO356_16175 -4.5 -10.3 acetolactate synthase 3 regulatory subunit compare
AO356_13605 -4.5 -10.4 5,10-methylenetetrahydrofolate reductase compare
AO356_06965 -4.4 -10.6 histidinol dehydrogenase compare
AO356_13405 -4.4 -11.5 methionine biosynthesis protein MetW compare
AO356_21400 -4.4 -7.2 isopropylmalate isomerase compare
AO356_15450 -4.3 -20.4 AMP nucleosidase compare
AO356_10910 -4.3 -10.1 tryptophan synthase subunit alpha compare
AO356_09800 -4.3 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_16180 -4.2 -15.8 ketol-acid reductoisomerase compare
AO356_19060 -4.1 -18.3 (p)ppGpp synthetase compare
AO356_12780 -4.1 -8.8 argininosuccinate lyase compare
AO356_09370 -4.0 -12.1 glutamate synthase compare
AO356_19795 -4.0 -3.9 glycerol-3-phosphate dehydrogenase compare
AO356_20830 -3.9 -4.6 phosphoadenosine phosphosulfate reductase compare
AO356_09640 -3.9 -6.8 histidine utilization repressor compare
AO356_21415 -3.9 -8.0 3-isopropylmalate dehydrogenase compare
AO356_20155 -3.9 -7.9 phosphate acyltransferase compare
AO356_16050 -3.9 -2.7 glucose-6-phosphate isomerase compare
AO356_06050 -3.9 -13.8 protein-PII uridylyltransferase compare
AO356_05160 -3.7 -8.6 glucose-6-phosphate dehydrogenase compare
AO356_10000 -3.6 -6.8 hypothetical protein compare
AO356_06550 -3.6 -9.0 2-isopropylmalate synthase compare
AO356_08460 -3.6 -8.6 urease accessory protein UreG conserved
AO356_02175 -3.6 -8.2 transaldolase compare
AO356_10005 -3.6 -10.1 branched-chain amino acid permease (azaleucine resistance) compare
AO356_22795 -3.5 -5.3 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_10340 -3.5 -13.2 phosphoserine phosphatase compare
AO356_08735 -3.5 -12.9 phosphoserine phosphatase compare
AO356_08465 -3.5 -3.5 protein hupE compare
AO356_19460 -3.4 -9.3 allantoinase (EC 3.5.2.5) (from data) conserved
AO356_06970 -3.3 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_03360 -3.3 -4.9 hypothetical protein compare
AO356_21470 -3.3 -6.7 O-succinylhomoserine sulfhydrylase compare
AO356_07910 -3.2 -2.2 exodeoxyribonuclease V subunit alpha compare
AO356_08640 -3.2 -5.7 membrane protease HflC compare
AO356_07845 -3.2 -14.3 MFS transporter compare
AO356_01245 -3.1 -11.1 glycogen branching protein compare
AO356_10300 -3.1 -5.2 3-phosphoglycerate dehydrogenase compare
AO356_08385 -3.1 -3.1 urease subunit beta compare
AO356_08895 -3.1 -2.1 GlcNAc-PI de-N-acetylase compare
AO356_07915 -3.0 -4.1 exodeoxyribonuclease V subunit beta compare
AO356_15815 -3.0 -2.7 gamma-glutamyl kinase compare
AO356_08645 -3.0 -6.4 hypothetical protein compare
AO356_16505 -3.0 -3.5 molybdopterin-synthase adenylyltransferase compare
AO356_08870 -2.9 -10.3 polymerase compare
AO356_03350 -2.9 -8.9 glycosyl transferase compare
AO356_06960 -2.8 -8.8 histidinol-phosphate aminotransferase compare
AO356_03375 -2.8 -3.4 ExsB family protein compare
AO356_19455 -2.8 -7.2 OHCU decarboxylase conserved
AO356_08455 -2.8 -4.1 urease accessory protein UreF compare
AO356_01740 -2.8 -4.2 DNA-binding protein compare
AO356_07850 -2.8 -14.5 hypothetical protein compare
AO356_10330 -2.7 -13.9 threonine dehydratase compare
AO356_10585 -2.7 -12.1 hypothetical protein compare
AO356_01745 -2.6 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_17520 -2.6 -3.5 phosphoribosylformylglycinamidine synthase compare
AO356_09795 -2.6 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_09995 -2.6 -6.8 LysR family transcriptional regulator compare
AO356_19465 -2.5 -4.7 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (from data) compare
AO356_08975 -2.5 -12.6 diguanylate cyclase compare
AO356_03345 -2.5 -11.5 hypothetical protein compare
AO356_18020 -2.5 -4.6 ATP-dependent DNA helicase RuvA compare
AO356_07480 -2.4 -4.6 carbamoyl phosphate synthase large subunit compare
AO356_17335 -2.4 -4.9 molybdenum cofactor biosynthesis protein MoaC compare
AO356_08890 -2.2 -8.3 glycosyltransferase compare
AO356_00560 -2.2 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_07540 -2.2 -2.5 SsrA-binding protein compare
AO356_01750 -2.2 -4.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_03420 -2.1 -8.0 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_17890 -2.0 -2.5 H-NS histone compare
AO356_08235 -2.0 -8.6 histidine kinase compare
AO356_25750 -2.0 -3.3 GntR family transcriptional regulator compare
AO356_10350 -1.9 -8.6 phosphoenolpyruvate-protein phosphotransferase compare
AO356_15165 -1.9 -1.9 protein cII compare
AO356_08660 -1.9 -8.8 tRNA dimethylallyltransferase compare
AO356_12380 -1.9 -8.3 ATP-dependent DNA helicase RecG compare
AO356_19050 -1.9 -3.7 cysteine synthase compare
AO356_19420 -1.9 -2.8 septum formation inhibitor compare
AO356_18025 -1.9 -3.3 ATP-dependent DNA helicase RuvB compare
AO356_02315 -1.9 -4.3 DNA topoisomerase I compare
AO356_09780 -1.9 -4.9 peptidase S41 compare
AO356_03355 -1.9 -5.0 hypothetical protein compare
AO356_07055 -1.9 -3.3 phosphocarrier protein HPr compare
AO356_12485 -1.9 -2.9 DNA-directed RNA polymerase subunit omega compare
AO356_30345 -1.8 -5.9 IclR family transcriptional regulator compare
AO356_03400 -1.8 -6.9 aminotransferase DegT compare
AO356_16095 -1.8 -7.3 molecular chaperone DnaK compare
AO356_21435 -1.8 -4.9 pseudouridine synthase compare
AO356_10345 -1.8 -6.0 RNA pyrophosphohydrolase compare
AO356_11315 -1.8 -2.1 shikimate dehydrogenase compare
AO356_06385 -1.8 -4.0 recombinase XerD compare
AO356_00555 -1.7 -8.4 sulfite reductase compare
AO356_18730 -1.7 -9.0 arginine N-succinyltransferase compare
AO356_08880 -1.7 -7.1 glycosyl transferase compare
AO356_12990 -1.7 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
AO356_14295 -1.7 -2.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_03365 -1.7 -4.5 UDP-N-acetylglucosamine 2-epimerase compare
AO356_22150 -1.7 -9.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_03715 -1.7 -8.9 chemotaxis protein CheA compare
AO356_17985 -1.7 -4.8 cold-shock protein compare
AO356_00605 -1.6 -4.8 TetR family transcriptional regulator compare
AO356_00875 -1.6 -4.0 MerR family transcriptional regulator compare
AO356_17970 -1.6 -11.2 porin compare
AO356_04550 -1.6 -2.1 response regulator SirA compare
AO356_02560 -1.6 -6.9 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
AO356_08585 -1.6 -3.5 50S ribosomal protein L9 compare
AO356_02565 -1.5 -11.4 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
AO356_02980 -1.5 -5.4 molybdenum cofactor biosynthesis protein MoaA compare
AO356_03800 -1.5 -2.4 histidine kinase compare
AO356_03070 -1.5 -8.0 histidine kinase compare
AO356_14050 -1.5 -1.9 glutathione S-transferase compare
AO356_07920 -1.5 -4.9 exodeoxyribonuclease V subunit gamma compare
AO356_20475 -1.5 -1.9 hypothetical protein compare
AO356_10015 -1.5 -9.6 protein BsmA compare
AO356_18805 -1.5 -2.1 magnesium transporter compare
AO356_03130 -1.5 -6.6 hypothetical protein compare
AO356_02985 -1.4 -5.4 molybdenum cofactor biosynthesis protein B compare
AO356_17950 -1.4 -7.5 histidine kinase compare
AO356_11465 -1.4 -6.0 DNA polymerase I compare
AO356_11675 -1.4 -7.1 chromosome partitioning protein compare
AO356_12900 -1.4 -4.2 exopolyphosphatase compare
AO356_20215 -1.4 -5.2 radical SAM protein compare
AO356_11680 -1.4 -2.8 chromosome partitioning protein ParB compare
AO356_21330 -1.4 -6.3 aromatic amino acid aminotransferase compare
AO356_11025 -1.3 -3.7 transcriptional regulator PhoU compare
AO356_05010 -1.3 -8.3 diguanylate cyclase compare
AO356_19450 -1.3 -4.4 allantoicase compare
AO356_03135 -1.3 -6.2 LysR family transcriptional regulator compare
AO356_08610 -1.3 -4.6 exoribonuclease R compare
AO356_02570 -1.3 -5.4 molybdenum cofactor sulfurylase compare
AO356_03415 -1.3 -7.0 oxidoreductase compare
AO356_03405 -1.3 -4.1 serine acetyltransferase compare
AO356_14100 -1.3 -6.7 malate synthase G compare
AO356_03810 -1.3 -1.2 anti-anti-sigma factor compare
AO356_09015 -1.3 -8.8 transcriptional regulator compare
AO356_11990 -1.3 -8.6 DNA helicase II compare
AO356_28710 -1.3 -0.8 aldehyde dehydrogenase compare
AO356_12725 -1.2 -4.4 recombinase XerC compare
AO356_16600 -1.2 -2.2 malate:quinone oxidoreductase compare
AO356_19440 -1.1 -7.6 hypothetical protein conserved
AO356_16485 -1.1 -5.3 hypothetical protein compare
AO356_03095 -1.1 -4.8 protease HtpX compare
AO356_22520 -1.1 -1.9 glyoxalase compare
AO356_12015 -1.1 -7.2 LysR family transcriptional regulator compare
AO356_02940 -1.1 -2.6 hypothetical protein compare
AO356_09765 -1.1 -2.5 sulfurtransferase compare
AO356_11145 -1.1 -7.6 carbonate dehydratase compare
AO356_19445 -1.1 -4.8 ureidoglycolate hydrolase compare
AO356_21665 -1.1 -4.4 hypothetical protein compare
AO356_00355 -1.1 -5.1 chemotaxis protein CheY compare
AO356_12020 -1.1 -7.3 pyruvate carboxylase subunit A compare
AO356_10160 -1.0 -6.5 ribosomal protein S6 modification protein compare
AO356_16075 -1.0 -3.3 Fis family transcriptional regulator compare
AO356_29105 -1.0 -1.7 fumarylacetoacetate hydrolase compare
AO356_12025 -1.0 -7.1 pyruvate carboxylase subunit B compare
AO356_04560 -1.0 -2.4 serine peptidase compare
AO356_06005 -1.0 -3.4 zinc metallopeptidase RseP compare
AO356_13455 -1.0 -2.7 uracil phosphoribosyltransferase compare
AO356_26915 -1.0 -1.8 Fe-S oxidoreductase compare
AO356_06065 -1.0 -1.2 ArsC family transcriptional regulator compare
AO356_03725 -0.9 -0.9 histidine kinase compare
AO356_04575 -0.9 -5.5 RNA polymerase subunit sigma compare
AO356_26350 -0.9 -2.2 acetyl-CoA acetyltransferase compare
AO356_07495 -0.9 -2.9 molecular chaperone DnaJ compare
AO356_05670 -0.9 -2.4 recombinase RecA compare
AO356_02860 -0.9 -1.8 histidine kinase compare
AO356_22130 -0.9 -3.5 hypothetical protein compare
AO356_03200 -0.9 -4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO356_26360 -0.9 -2.0 enoyl-CoA hydratase compare
AO356_07985 -0.9 -4.9 ABC transporter permease compare
AO356_17065 -0.9 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare


Specific Phenotypes

For 26 genes in this experiment

For nitrogen source Inosine in Pseudomonas fluorescens FW300-N2C3

For nitrogen source Inosine across organisms