Experiment set6IT053 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB 30C

200 most important genes:

  gene name fitness t score description  
AO353_21625 -4.1 -3.9 Fe/S biogenesis protein NfuA compare
AO353_00430 -3.3 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_00825 -3.2 -7.1 porin compare
AO353_12115 -3.0 -2.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_15250 -2.8 -4.7 cytochrome B compare
AO353_14220 -2.7 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_14940 -2.6 -4.9 malate:quinone oxidoreductase compare
AO353_19360 -2.4 -4.2 peroxiredoxin compare
AO353_06040 -2.4 -4.8 exodeoxyribonuclease V subunit alpha compare
AO353_13155 -2.4 -5.0 hypothetical protein compare
AO353_12345 -2.4 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_07355 -2.2 -7.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_05690 -2.2 -4.8 SsrA-binding protein compare
AO353_04355 -2.1 -3.0 homoserine dehydrogenase compare
AO353_03615 -2.1 -4.1 cold-shock protein compare
AO353_13160 -2.0 -3.0 membrane protease HflC compare
AO353_12500 -2.0 -2.3 shikimate kinase compare
AO353_00495 -1.9 -2.9 DNA topoisomerase I compare
AO353_06050 -1.9 -7.4 exodeoxyribonuclease V subunit gamma compare
AO353_02250 -1.9 -4.3 chorismate synthase compare
AO353_00460 -1.9 -3.9 TetR family transcriptional regulator compare
AO353_01685 -1.9 -2.6 hypothetical protein compare
AO353_08620 -1.9 -2.5 hypothetical protein compare
AO353_09135 -1.7 -2.6 cytochrome C compare
AO353_07645 -1.7 -2.0 sarcosine oxidase subunit gamma compare
AO353_16940 -1.7 -5.9 deoxycytidine triphosphate deaminase compare
AO353_06720 -1.7 -2.7 NrdR family transcriptional regulator compare
AO353_09050 -1.6 -4.1 recombinase XerC compare
AO353_03580 -1.6 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_18540 -1.6 -3.0 pseudouridine synthase compare
AO353_13715 -1.6 -3.8 translation initiation factor Sui1 compare
AO353_14495 -1.6 -9.5 acetolactate synthase 3 catalytic subunit compare
AO353_14740 -1.6 -4.0 GTP-binding protein compare
AO353_07315 -1.6 -2.9 rRNA methyltransferase compare
AO353_02975 -1.5 -3.3 aspartate kinase compare
AO353_16805 -1.5 -4.9 recombinase RecA compare
AO353_07075 -1.5 -4.6 elongation factor Tu compare
AO353_04175 -1.5 -4.9 glycerol uptake facilitator GlpF compare
AO353_11730 -1.5 -8.2 glutamate--cysteine ligase compare
AO353_08880 -1.5 -2.6 exopolyphosphatase compare
AO353_10950 -1.5 -7.8 thiol:disulfide interchange protein compare
AO353_00650 -1.5 -3.1 cytochrome biogenesis protein compare
AO353_12690 -1.5 -1.5 acyl carrier protein compare
AO353_13100 -1.5 -1.7 GTPase RsgA compare
AO353_02070 -1.5 -6.1 prephenate dehydratase compare
AO353_03585 -1.4 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_04520 -1.4 -4.4 elongation factor 4 compare
AO353_20170 -1.4 -4.8 trigger factor compare
AO353_18715 -1.4 -2.1 histidine kinase compare
AO353_20175 -1.4 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_14400 -1.4 -4.2 Fis family transcriptional regulator compare
AO353_03590 -1.4 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_11165 -1.4 -7.3 hypothetical protein compare
AO353_15905 -1.3 -6.2 outer membrane protein assembly factor BamB compare
AO353_09240 -1.3 -3.1 acetylglutamate kinase compare
AO353_19280 -1.3 -2.5 hypothetical protein compare
AO353_18890 -1.3 -4.0 cytochrome C compare
AO353_20340 -1.3 -3.6 gamma-carboxygeranoyl-CoA hydratase compare
AO353_15555 -1.3 -4.3 fumarylacetoacetase compare
AO353_05880 -1.3 -1.4 plasmid stabilization protein compare
AO353_01595 -1.3 -2.1 Flp pilus assembly protein CpaB compare
AO353_15185 -1.3 -4.1 ATPase compare
AO353_09250 -1.3 -2.7 exodeoxyribonuclease III compare
AO353_24130 -1.2 -3.3 hypothetical protein compare
AO353_06495 -1.2 -4.2 gamma-glutamyl phosphate reductase compare
AO353_07155 -1.2 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_01410 -1.2 -2.6 ribonuclease E compare
AO353_06045 -1.2 -5.5 exodeoxyribonuclease V subunit beta compare
AO353_08265 -1.2 -4.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_11530 -1.2 -6.0 diguanylate cyclase compare
AO353_08115 -1.2 -5.0 energy transducer TonB compare
AO353_13925 -1.2 -2.3 XRE family transcriptional regulator compare
AO353_13640 -1.2 -3.8 histidine kinase compare
AO353_00510 -1.2 -4.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_14420 -1.1 -3.8 molecular chaperone DnaK compare
AO353_03710 -1.1 -2.5 formyltetrahydrofolate deformylase compare
AO353_02000 -1.1 -3.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_11770 -1.1 -1.8 molecular chaperone Hsp33 compare
AO353_11750 -1.1 -1.9 ATPase compare
AO353_13140 -1.1 -4.8 tRNA dimethylallyltransferase compare
AO353_10945 -1.1 -2.2 cytochrome C compare
AO353_06850 -1.1 -3.7 MFS transporter compare
AO353_13570 -1.1 -7.2 TonB-dependent receptor compare
AO353_14500 -1.1 -4.9 acetolactate synthase 3 regulatory subunit compare
AO353_02330 -1.1 -2.8 allantoicase compare
AO353_01135 -1.1 -2.3 enoyl-CoA hydratase compare
AO353_25845 -1.1 -1.8 GNAT family acetyltransferase compare
AO353_19435 -1.1 -2.7 TetR family transcriptional regulator compare
AO353_00505 -1.0 -3.3 3-ketoacyl-CoA thiolase compare
AO353_03795 -1.0 -3.4 fumarate hydratase compare
AO353_12880 -1.0 -2.2 ADP-heptose--LPS heptosyltransferase compare
AO353_00515 -1.0 -2.7 hypothetical protein compare
AO353_08015 -1.0 -5.0 5,10-methylenetetrahydrofolate reductase compare
AO353_14585 -1.0 -3.9 ribosomal-protein-alanine acetyltransferase compare
AO353_01975 -1.0 -5.6 glycosyl transferase compare
AO353_13225 -1.0 -2.6 50S ribosomal protein L9 compare
AO353_12105 -1.0 -4.4 peptidase S41 compare
AO353_02005 -1.0 -1.7 hypothetical protein compare
AO353_07515 -1.0 -1.8 transporter compare
AO353_03670 -1.0 -3.6 ornithine acetyltransferase compare
AO353_18285 -1.0 -2.4 3-phosphoglycerate kinase compare
AO353_14775 -1.0 -4.5 hypothetical protein compare
AO353_23495 -1.0 -2.2 SAM-dependent methyltransferase compare
AO353_27720 -1.0 -3.6 cupin compare
AO353_15640 -1.0 -2.7 acetylornithine aminotransferase compare
AO353_21905 -1.0 -2.2 hypothetical protein compare
AO353_20370 -0.9 -2.0 MerR family transcriptional regulator compare
AO353_13200 -0.9 -6.2 exoribonuclease R compare
AO353_10670 -0.9 -4.0 shikimate dehydrogenase compare
AO353_20565 -0.9 -1.6 tRNA-Ala compare
AO353_20345 -0.9 -4.6 methylcrotonoyl-CoA carboxylase compare
AO353_17100 -0.9 -2.1 hypothetical protein compare
AO353_28315 -0.9 -3.1 3-demethylubiquinone-9 3-methyltransferase compare
AO353_16425 -0.9 -1.6 Fe-S metabolism protein SufE compare
AO353_01795 -0.9 -2.1 hypothetical protein compare
AO353_12650 -0.9 -1.2 hypothetical protein compare
AO353_28425 -0.9 -2.6 TetR family transcriptional regulator compare
AO353_18505 -0.9 -1.5 translation initiation factor 2 compare
AO353_09000 -0.9 -3.5 argininosuccinate lyase compare
AO353_09720 -0.9 -1.4 hypothetical protein compare
AO353_07495 -0.9 -6.6 acyl-CoA dehydrogenase compare
AO353_23400 -0.9 -2.2 hypothetical protein compare
AO353_04565 -0.9 -3.6 nucleoid-associated protein compare
AO353_15785 -0.9 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_14945 -0.8 -2.4 hypothetical protein compare
AO353_05535 -0.8 -2.2 tRNA-Thr compare
AO353_15445 -0.8 -2.2 disulfide bond formation protein B compare
AO353_24535 -0.8 -1.6 hypothetical protein compare
AO353_22920 -0.8 -3.2 GntR family transcriptional regulator compare
AO353_12090 -0.8 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08545 -0.8 -3.3 thiol-disulfide isomerase compare
AO353_15825 -0.8 -1.7 serine acetyltransferase compare
AO353_10780 -0.8 -1.2 DNA-binding protein compare
AO353_06795 -0.8 -1.7 Isochorismatase compare
AO353_19250 -0.8 -1.7 molybdenum cofactor guanylyltransferase compare
AO353_16825 -0.8 -3.2 hypothetical protein compare
AO353_01375 -0.8 -3.6 phosphate acyltransferase compare
AO353_28700 -0.8 -2.1 hypothetical protein compare
AO353_04180 -0.8 -4.6 glycerol kinase compare
AO353_10875 -0.8 -3.4 copper-binding protein compare
AO353_00850 -0.8 -2.5 ribonuclease activity regulator protein RraA compare
AO353_08685 -0.8 -4.4 N-acetylglutamate synthase compare
AO353_13685 -0.8 -2.5 3-dehydroquinate dehydratase compare
AO353_20860 -0.8 -1.7 hypothetical protein compare
AO353_14150 -0.8 -1.2 peptidylprolyl isomerase compare
AO353_07105 -0.8 -1.2 biotin--protein ligase compare
AO353_17885 -0.8 -1.4 hypothetical protein compare
AO353_23350 -0.8 -2.1 hypothetical protein compare
AO353_20785 -0.8 -2.9 carbon storage regulator CsrA compare
AO353_02630 -0.8 -1.9 5,6-dimethylbenzimidazole synthase compare
AO353_14395 -0.7 -2.4 poly(A) polymerase compare
AO353_17640 -0.7 -1.6 serine peptidase compare
AO353_00635 -0.7 -1.7 hypothetical protein compare
AO353_02970 -0.7 -2.1 carbon storage regulator compare
AO353_06540 -0.7 -1.6 hypothetical protein compare
AO353_09400 -0.7 -2.2 hypothetical protein compare
AO353_16745 -0.7 -1.5 ArsR family transcriptional regulator compare
AO353_03875 -0.7 -3.0 3-beta hydroxysteroid dehydrogenase compare
AO353_28815 -0.7 -1.7 hypothetical protein compare
AO353_00310 -0.7 -4.4 transaldolase compare
AO353_22860 -0.7 -4.3 cytochrome C oxidase Cbb3 compare
AO353_09775 -0.7 -2.1 hypothetical protein compare
AO353_00520 -0.7 -3.1 universal stress protein UspA compare
AO353_20335 -0.7 -3.0 3-methylcrotonyl-CoA carboxylase compare
AO353_04190 -0.7 -1.3 glycerol-3-phosphate dehydrogenase compare
AO353_00490 -0.7 -1.6 PasA protein compare
AO353_26830 -0.7 -2.1 histidine kinase compare
AO353_25260 -0.7 -2.4 hypothetical protein compare
AO353_13580 -0.7 -2.1 copper resistance protein CopZ compare
AO353_24540 -0.7 -2.7 hypothetical protein compare
AO353_17235 -0.7 -2.2 4-carboxymuconolactone decarboxylase compare
AO353_17750 -0.7 -1.8 transcriptional regulator compare
AO353_20255 -0.7 -2.2 transcriptional regulator compare
AO353_21290 -0.7 -1.8 hypothetical protein compare
AO353_20495 -0.7 -0.9 NUDIX hydrolase compare
AO353_14370 -0.7 -3.0 glucose-6-phosphate isomerase compare
AO353_10170 -0.7 -4.5 fatty acid methyltransferase compare
AO353_19295 -0.7 -1.1 hypothetical protein compare
AO353_16810 -0.6 -2.0 recombinase RecX compare
AO353_00660 -0.6 -1.7 transcriptional regulator compare
AO353_20410 -0.6 -1.6 hypothetical protein compare
AO353_06490 -0.6 -1.9 nicotinate-nucleotide adenylyltransferase compare
AO353_23910 -0.6 -1.8 response regulator compare
AO353_00890 -0.6 -2.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_17935 -0.6 -1.4 hypothetical protein compare
AO353_04340 -0.6 -1.4 hypothetical protein compare
AO353_09945 -0.6 -2.0 LysR family transcriptional regulator compare
AO353_15875 -0.6 -2.2 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_03520 -0.6 -1.5 hypothetical protein compare
AO353_07695 -0.6 -2.2 electron transfer flavoprotein subunit beta compare
AO353_10435 -0.6 -3.5 chromosome partitioning protein compare
AO353_00835 -0.6 -3.0 transporter compare
AO353_10985 -0.6 -1.3 hypothetical protein compare
AO353_01405 -0.6 -3.4 23S rRNA pseudouridylate synthase compare
AO353_08165 -0.6 -1.6 pyrroline-5-carboxylate reductase compare
AO353_21055 -0.6 -2.4 glycosyl hydrolase compare
AO353_17850 -0.6 -1.6 SAM-dependent methyltransferase compare
AO353_20680 -0.6 -2.1 cell division protein compare
AO353_06585 -0.6 -3.0 hypothetical protein compare
AO353_10440 -0.6 -2.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in temperature experiments