Experiment set6IT052 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium Chloride 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_6140 -3.5 -1.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2320 -3.5 -3.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_156 -3.2 -3.0 Carbon storage regulator compare
Pf6N2E2_5068 -2.9 -11.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5425 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_2312 -2.8 -2.5 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5006 -2.8 -8.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5242 -2.8 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4454 -2.7 -5.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1087 -2.6 -8.6 Iron siderophore sensor protein compare
Pf6N2E2_4187 -2.6 -3.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5001 -2.6 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5069 -2.5 -5.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2127 -2.4 -4.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3521 -2.3 -8.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_2274 -2.3 -5.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3282 -2.3 -1.6 FIG005080: Possible exported protein compare
Pf6N2E2_4059 -2.3 -1.6 DNA-binding protein HU-alpha compare
Pf6N2E2_1056 -2.3 -1.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2313 -2.2 -3.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4071 -2.1 -3.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3612 -2.1 -2.5 HflK protein compare
Pf6N2E2_4570 -2.1 -2.6 Cation/multidrug efflux pump compare
Pf6N2E2_4803 -2.1 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4584 -2.1 -3.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3303 -2.0 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5342 -2.0 -3.3 21 kDa hemolysin precursor compare
Pf6N2E2_5337 -2.0 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5088 -1.9 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4153 -1.9 -1.3 Sensory box histidine kinase compare
Pf6N2E2_2318 -1.9 -6.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2706 -1.9 -2.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4369 -1.9 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3663 -1.8 -6.0 Glycosyl transferase compare
Pf6N2E2_2825 -1.8 -3.4 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4159 -1.8 -3.0 Cytochrome c4 compare
Pf6N2E2_2126 -1.8 -5.0 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3908 -1.8 -5.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5339 -1.8 -5.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1424 -1.8 -2.0 transcriptional regulator, TetR family compare
Pf6N2E2_5338 -1.7 -6.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3477 -1.7 -2.2 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3829 -1.7 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1065 -1.7 -3.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2310 -1.6 -7.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4743 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_5316 -1.6 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3834 -1.6 -5.5 Lipoprotein NlpD compare
Pf6N2E2_3661 -1.6 -3.3 hypothetical protein compare
Pf6N2E2_3941 -1.6 -2.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2869 -1.6 -1.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3607 -1.6 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4352 -1.6 -2.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3351 -1.6 -3.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5392 -1.6 -2.7 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3847 -1.5 -3.2 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3844 -1.5 -2.5 hypothetical protein compare
Pf6N2E2_1636 -1.5 -6.4 Ferrichrome-iron receptor compare
Pf6N2E2_2574 -1.5 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_2311 -1.5 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4710 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_5739 -1.4 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2756 -1.4 -5.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5321 -1.4 -6.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_3333 -1.4 -5.5 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
Pf6N2E2_282 -1.4 -1.7 GNAT family acetyltransferase YjcF compare
Pf6N2E2_1723 -1.4 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2499 -1.4 -1.8 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_3792 -1.4 -4.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_1124 -1.3 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2824 -1.3 -5.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2317 -1.3 -3.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2586 -1.3 -1.7 Hpt domain protein compare
Pf6N2E2_5748 -1.3 -2.7 Transcriptional activator protein LuxR compare
Pf6N2E2_5956 -1.3 -4.8 FIG004453: protein YceG like compare
Pf6N2E2_2753 -1.3 -1.9 HtrA protease/chaperone protein compare
Pf6N2E2_3505 -1.3 -1.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3665 -1.3 -0.9 serine/threonine protein kinase compare
Pf6N2E2_3331 -1.3 -7.0 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation compare
Pf6N2E2_5318 -1.3 -9.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4585 -1.3 -7.7 Cell division protein FtsX compare
Pf6N2E2_3617 -1.3 -3.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2823 -1.3 -3.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2413 -1.3 -2.0 FIG074102: hypothetical protein compare
Pf6N2E2_5584 -1.3 -2.3 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_5178 -1.3 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1299 -1.3 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5520 -1.3 -4.4 Sensory box histidine kinase compare
Pf6N2E2_4204 -1.3 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2507 -1.3 -4.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4921 -1.3 -3.1 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_6090 -1.2 -0.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3782 -1.2 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4612 -1.2 -3.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3264 -1.2 -1.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5319 -1.2 -5.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4638 -1.2 -2.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4057 -1.2 -1.0 lipoprotein, putative compare
Pf6N2E2_4630 -1.2 -2.7 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_2755 -1.2 -0.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3659 -1.2 -3.6 Protein fixF compare
Pf6N2E2_2384 -1.1 -2.8 CmpX compare
Pf6N2E2_5150 -1.1 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1243 -1.1 -4.1 FIG00953437: hypothetical protein compare
Pf6N2E2_4908 -1.1 -4.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1966 -1.1 -2.0 SAM-dependent methyltransferases compare
Pf6N2E2_4996 -1.1 -2.2 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_3198 -1.1 -1.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3039 -1.1 -4.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4611 -1.1 -2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5919 -1.1 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_4077 -1.1 -1.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4146 -1.1 -1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_855 -1.1 -2.2 Transcriptional regulator, IclR family compare
Pf6N2E2_288 -1.1 -1.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_1169 -1.1 -1.6 TnpR protein compare
Pf6N2E2_5394 -1.0 -2.6 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_1470 -1.0 -2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_3161 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_5406 -1.0 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_3460 -1.0 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5320 -1.0 -3.8 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2572 -1.0 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2447 -1.0 -3.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4415 -1.0 -1.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_2527 -1.0 -2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1987 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_3835 -1.0 -2.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3330 -1.0 -4.8 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf6N2E2_2034 -1.0 -1.9 Methyltransferase compare
Pf6N2E2_3664 -1.0 -4.3 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3588 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_3658 -1.0 -3.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2734 -1.0 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_2552 -1.0 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2062 -1.0 -2.0 FIG00955561: hypothetical protein compare
Pf6N2E2_4451 -1.0 -3.4 FIG139438: lipoprotein B compare
Pf6N2E2_4889 -1.0 -3.2 Putative transport protein compare
Pf6N2E2_5243 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_2459 -1.0 -1.7 Organic hydroperoxide resistance protein compare
Pf6N2E2_4216 -0.9 -1.9 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_3666 -0.9 -1.9 InaA protein compare
Pf6N2E2_5329 -0.9 -3.2 Alpha/beta hydrolase compare
Pf6N2E2_4601 -0.9 -1.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3611 -0.9 -0.8 HflC protein compare
Pf6N2E2_5317 -0.9 -5.8 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4417 -0.9 -2.0 Protein of unknown function DUF484 compare
Pf6N2E2_2225 -0.9 -1.5 FIG00953489: hypothetical protein compare
Pf6N2E2_4479 -0.9 -1.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5780 -0.9 -3.9 Periplasmic protease compare
Pf6N2E2_3716 -0.9 -2.3 FIG143263: Glycosyl transferase compare
Pf6N2E2_5727 -0.9 -3.4 FIG00955360: hypothetical protein compare
Pf6N2E2_1870 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_4477 -0.9 -2.4 Z-ring-associated protein ZapA compare
Pf6N2E2_3587 -0.9 -2.6 Azurin compare
Pf6N2E2_3655 -0.9 -5.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_180 -0.9 -1.8 Transcriptional regulator, MerR family compare
Pf6N2E2_2425 -0.9 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_142 -0.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3713 -0.9 -1.7 Acyl carrier protein compare
Pf6N2E2_5725 -0.9 -2.6 nucleoprotein/polynucleotide-associated enzyme compare
Pf6N2E2_4372 -0.9 -2.8 FIG00460773: hypothetical protein compare
Pf6N2E2_2927 -0.8 -2.0 Putative signal peptide protein compare
Pf6N2E2_2682 -0.8 -1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_225 -0.8 -2.9 Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28) compare
Pf6N2E2_63 -0.8 -3.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3332 -0.8 -2.9 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf6N2E2_2508 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_2285 -0.8 -0.6 FIG00954079: hypothetical protein compare
Pf6N2E2_1249 -0.8 -1.9 Transcriptional regulator, AraC family compare
Pf6N2E2_5237 -0.8 -1.3 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_5625 -0.8 -2.6 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Pf6N2E2_2018 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_5623 -0.8 -1.8 YciL protein compare
Pf6N2E2_1448 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2754 -0.8 -1.8 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_819 -0.8 -1.8 Response regulator compare
Pf6N2E2_1340 -0.8 -0.9 major pilin protein fimA compare
Pf6N2E2_829 -0.8 -1.7 TesB-like acyl-CoA thioesterase 1 compare
Pf6N2E2_2282 -0.8 -1.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_87 -0.8 -3.4 hypothetical protein compare
Pf6N2E2_1441 -0.8 -1.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_3641 -0.8 -1.7 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_504 -0.8 -2.0 DNA-binding response regulator compare
Pf6N2E2_4540 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_3252 -0.8 -3.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5775 -0.8 -1.7 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_291 -0.8 -2.8 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2366 -0.8 -2.3 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_5746 -0.8 -1.2 Cobalamin synthase compare
Pf6N2E2_2448 -0.8 -1.7 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_4467 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_750 -0.8 -1.5 Transcriptional regulator, DeoR family compare
Pf6N2E2_3536 -0.8 -3.2 Cobalt-precorrin-6 synthase, anaerobic compare
Pf6N2E2_733 -0.8 -1.4 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_2532 -0.8 -2.0 Thioredoxin compare
Pf6N2E2_2208 -0.8 -2.0 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_2899 -0.8 -2.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4593 -0.8 -1.9 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf6N2E2_5252 -0.8 -0.7 FIG00956396: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Potassium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Potassium Chloride across organisms