Experiment set6IT052 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB 20C

200 most important genes:

  gene name fitness t score description  
AO353_24130 -3.9 -4.8 hypothetical protein compare
AO353_00825 -3.9 -6.4 porin compare
AO353_00430 -3.5 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13100 -3.4 -3.2 GTPase RsgA compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_07315 -2.7 -3.4 rRNA methyltransferase compare
AO353_09040 -2.6 -3.1 diaminopimelate epimerase compare
AO353_21625 -2.6 -3.8 Fe/S biogenesis protein NfuA compare
AO353_02070 -2.5 -8.4 prephenate dehydratase compare
AO353_07355 -2.5 -7.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_14740 -2.4 -4.7 GTP-binding protein compare
AO353_03615 -2.3 -4.9 cold-shock protein compare
AO353_09135 -2.2 -3.0 cytochrome C compare
AO353_10670 -2.1 -7.5 shikimate dehydrogenase compare
AO353_12115 -2.1 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02250 -2.1 -4.4 chorismate synthase compare
AO353_03585 -2.0 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_10445 -2.0 -2.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_02060 -1.9 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_04190 -1.9 -2.8 glycerol-3-phosphate dehydrogenase compare
AO353_04355 -1.9 -3.1 homoserine dehydrogenase compare
AO353_18540 -1.9 -3.3 pseudouridine synthase compare
AO353_20800 -1.9 -2.2 hypothetical protein compare
AO353_14220 -1.8 -2.1 ribosomal large subunit pseudouridine synthase D compare
AO353_14940 -1.8 -3.5 malate:quinone oxidoreductase compare
AO353_18715 -1.8 -2.6 histidine kinase compare
AO353_14495 -1.7 -10.1 acetolactate synthase 3 catalytic subunit compare
AO353_14400 -1.7 -4.7 Fis family transcriptional regulator compare
AO353_20175 -1.6 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_27695 -1.6 -7.0 isocitrate dehydrogenase compare
AO353_07515 -1.6 -2.6 transporter compare
AO353_11730 -1.6 -8.9 glutamate--cysteine ligase compare
AO353_27720 -1.6 -5.1 cupin compare
AO353_05420 -1.6 -2.3 peptide chain release factor 3 compare
AO353_11530 -1.6 -7.4 diguanylate cyclase compare
AO353_14420 -1.5 -4.9 molecular chaperone DnaK compare
AO353_19145 -1.5 -4.5 protease HtpX compare
AO353_00515 -1.5 -3.4 hypothetical protein compare
AO353_20565 -1.5 -2.1 tRNA-Ala compare
AO353_00495 -1.5 -2.3 DNA topoisomerase I compare
AO353_00650 -1.4 -3.1 cytochrome biogenesis protein compare
AO353_13140 -1.4 -5.7 tRNA dimethylallyltransferase compare
AO353_06495 -1.4 -3.9 gamma-glutamyl phosphate reductase compare
AO353_11165 -1.4 -7.4 hypothetical protein compare
AO353_12930 -1.4 -3.3 GlcNAc-PI de-N-acetylase compare
AO353_07075 -1.4 -4.8 elongation factor Tu compare
AO353_06050 -1.4 -6.2 exodeoxyribonuclease V subunit gamma compare
AO353_09890 -1.4 -4.6 phosphate ABC transporter ATP-binding protein compare
AO353_20170 -1.4 -4.3 trigger factor compare
AO353_11770 -1.4 -2.0 molecular chaperone Hsp33 compare
AO353_04175 -1.4 -4.6 glycerol uptake facilitator GlpF compare
AO353_09000 -1.3 -5.0 argininosuccinate lyase compare
AO353_27650 -1.3 -4.1 cell division protein FtsK compare
AO353_05690 -1.3 -3.4 SsrA-binding protein compare
AO353_13070 -1.3 -6.1 phosphoserine phosphatase compare
AO353_03710 -1.3 -3.1 formyltetrahydrofolate deformylase compare
AO353_08265 -1.3 -5.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_04520 -1.3 -4.1 elongation factor 4 compare
AO353_12090 -1.3 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_13225 -1.3 -3.2 50S ribosomal protein L9 compare
AO353_13200 -1.3 -7.8 exoribonuclease R compare
AO353_00610 -1.2 -1.9 cytochrome C oxidase Cbb3 compare
AO353_03795 -1.2 -3.9 fumarate hydratase compare
AO353_08980 -1.2 -3.2 heme biosynthesis operon protein HemX compare
AO353_13220 -1.2 -5.5 hypothetical protein compare
AO353_07155 -1.2 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_06045 -1.2 -5.6 exodeoxyribonuclease V subunit beta compare
AO353_02940 -1.2 -3.1 DNA-binding protein compare
AO353_16040 -1.2 -2.3 hypothetical protein compare
AO353_14150 -1.2 -1.8 peptidylprolyl isomerase compare
AO353_04565 -1.2 -4.7 nucleoid-associated protein compare
AO353_03840 -1.1 -2.5 ABC transporter ATP-binding protein compare
AO353_22810 -1.1 -1.5 hypothetical protein compare
AO353_19360 -1.1 -2.5 peroxiredoxin compare
AO353_21400 -1.1 -2.2 conjugal transfer protein TraR compare
AO353_16940 -1.1 -3.8 deoxycytidine triphosphate deaminase compare
AO353_08685 -1.1 -5.4 N-acetylglutamate synthase compare
AO353_02000 -1.1 -3.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_01975 -1.1 -6.1 glycosyl transferase compare
AO353_08115 -1.1 -4.3 energy transducer TonB compare
AO353_12225 -1.1 -3.2 hypothetical protein compare
AO353_03590 -1.1 -2.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_09045 -1.1 -1.6 hypothetical protein compare
AO353_19250 -1.0 -1.9 molybdenum cofactor guanylyltransferase compare
AO353_04055 -1.0 -2.0 methionine--tRNA ligase compare
AO353_20340 -1.0 -3.0 gamma-carboxygeranoyl-CoA hydratase compare
AO353_06040 -1.0 -2.9 exodeoxyribonuclease V subunit alpha compare
AO353_14775 -1.0 -5.2 hypothetical protein compare
AO353_15250 -1.0 -2.7 cytochrome B compare
AO353_19085 -1.0 -2.4 organic hydroperoxide resistance protein compare
AO353_04500 -1.0 -2.0 DNA repair protein RecO compare
AO353_08910 -1.0 -2.3 hypothetical protein compare
AO353_12880 -1.0 -1.0 ADP-heptose--LPS heptosyltransferase compare
AO353_07445 -1.0 -1.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_00185 -1.0 -1.8 phage tail protein compare
AO353_14500 -1.0 -3.6 acetolactate synthase 3 regulatory subunit compare
AO353_00510 -1.0 -3.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_09250 -1.0 -2.2 exodeoxyribonuclease III compare
AO353_17435 -1.0 -4.1 hypothetical protein compare
AO353_13580 -0.9 -2.3 copper resistance protein CopZ compare
AO353_00750 -0.9 -2.6 GntR family transcriptional regulator compare
AO353_01355 -0.9 -5.2 3-oxoacyl-ACP synthase compare
AO353_12915 -0.9 -5.0 carbamoyltransferase compare
AO353_03670 -0.9 -2.9 ornithine acetyltransferase compare
AO353_22510 -0.9 -2.6 hypothetical protein compare
AO353_18425 -0.9 -3.2 hypothetical protein compare
AO353_02075 -0.9 -5.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_06720 -0.9 -1.9 NrdR family transcriptional regulator compare
AO353_11695 -0.9 -1.7 hypothetical protein compare
AO353_12145 -0.9 -2.8 nitrogen regulation protein NR(I) compare
AO353_00460 -0.9 -2.0 TetR family transcriptional regulator compare
AO353_03360 -0.9 -5.0 glucose-6-phosphate dehydrogenase compare
AO353_29280 -0.9 -2.3 hypothetical protein compare
AO353_00635 -0.9 -2.0 hypothetical protein compare
AO353_16855 -0.9 -3.0 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
AO353_04220 -0.9 -3.7 chemotaxis protein CheY compare
AO353_14395 -0.9 -2.7 poly(A) polymerase compare
AO353_02020 -0.9 -3.5 hypothetical protein compare
AO353_15170 -0.9 -1.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_11775 -0.9 -3.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_10950 -0.9 -5.7 thiol:disulfide interchange protein compare
AO353_10455 -0.9 -1.6 tRNA modification GTPase MnmE compare
AO353_15260 -0.9 -3.6 stringent starvation protein A compare
AO353_08015 -0.8 -4.3 5,10-methylenetetrahydrofolate reductase compare
AO353_07325 -0.8 -1.4 diadenosine tetraphosphatase compare
AO353_18135 -0.8 -1.6 hypothetical protein compare
AO353_14915 -0.8 -1.5 (2Fe-2S)-binding protein compare
AO353_15885 -0.8 -3.2 Cro/Cl family transcriptional regulator compare
AO353_02130 -0.8 -2.8 disulfide bond formation protein DsbA compare
AO353_03430 -0.8 -1.9 methylglyoxal synthase compare
AO353_08880 -0.8 -1.5 exopolyphosphatase compare
AO353_24625 -0.8 -1.8 hypothetical protein compare
AO353_09240 -0.8 -2.1 acetylglutamate kinase compare
AO353_27460 -0.8 -2.0 hypothetical protein compare
AO353_04970 -0.8 -2.3 cell division protein DedD compare
AO353_15385 -0.8 -1.5 hypothetical protein compare
AO353_15905 -0.8 -4.0 outer membrane protein assembly factor BamB compare
AO353_12105 -0.8 -3.4 peptidase S41 compare
AO353_17035 -0.8 -3.0 hypothetical protein compare
AO353_20140 -0.8 -2.7 hypothetical protein compare
AO353_10710 -0.8 -3.2 tryptophan synthase subunit beta compare
AO353_16825 -0.8 -3.3 hypothetical protein compare
AO353_19435 -0.7 -2.2 TetR family transcriptional regulator compare
AO353_18655 -0.7 -2.4 flagellar assembly protein FliT compare
AO353_20370 -0.7 -1.8 MerR family transcriptional regulator compare
AO353_12130 -0.7 -2.5 preprotein translocase subunit SecB compare
AO353_21350 -0.7 -2.0 methylmalonate-semialdehyde dehydrogenase compare
AO353_08510 -0.7 -3.0 3-phosphoglycerate dehydrogenase compare
AO353_16805 -0.7 -3.2 recombinase RecA compare
AO353_08110 -0.7 -3.6 glutathione synthetase compare
AO353_04360 -0.7 -3.5 protein-disulfide isomerase compare
AO353_06850 -0.7 -2.7 MFS transporter compare
AO353_22950 -0.7 -1.8 universal stress protein UspA compare
AO353_10705 -0.7 -2.5 tryptophan synthase subunit alpha compare
AO353_04365 -0.7 -2.7 recombinase XerD compare
AO353_22855 -0.7 -1.7 hypothetical protein compare
AO353_01375 -0.7 -3.3 phosphate acyltransferase compare
AO353_09320 -0.7 -4.4 ATP-dependent DNA helicase RecG compare
AO353_10055 -0.7 -4.7 DNA helicase II compare
AO353_21430 -0.7 -1.7 hypothetical protein compare
AO353_15555 -0.7 -2.5 fumarylacetoacetase compare
AO353_18600 -0.7 -2.1 flagellar basal-body rod protein FlgG compare
AO353_14115 -0.7 -3.1 gamma-glutamyl kinase compare
AO353_03580 -0.7 -1.9 ATP-dependent DNA helicase RuvB compare
AO353_14795 -0.7 -2.0 molybdopterin-synthase adenylyltransferase compare
AO353_22045 -0.7 -2.6 molybdenum cofactor biosynthesis protein MoaA compare
AO353_02970 -0.7 -1.5 carbon storage regulator compare
AO353_22985 -0.7 -1.6 hypothetical protein compare
AO353_00835 -0.7 -3.0 transporter compare
AO353_26195 -0.6 -1.1 hypothetical protein compare
AO353_02710 -0.6 -4.8 (p)ppGpp synthetase compare
AO353_09900 -0.6 -4.5 phosphate ABC transporter permease compare
AO353_17675 -0.6 -2.4 hypothetical protein compare
AO353_09150 -0.6 -1.7 cytochrome C2 compare
AO353_11840 -0.6 -2.4 haloacid dehalogenase compare
AO353_18005 -0.6 -2.6 allophanate hydrolase compare
AO353_13570 -0.6 -4.8 TonB-dependent receptor compare
AO353_14370 -0.6 -3.0 glucose-6-phosphate isomerase compare
AO353_17160 -0.6 -1.4 aspartate-semialdehyde dehydrogenase compare
AO353_22920 -0.6 -2.6 GntR family transcriptional regulator compare
AO353_06415 -0.6 -2.4 hypothetical protein compare
AO353_24135 -0.6 -2.2 hypothetical protein compare
AO353_25660 -0.6 -2.2 ABC transporter substrate-binding protein compare
AO353_13585 -0.6 -1.9 predicted copper homeostasis protein (from data) compare
AO353_12690 -0.6 -0.8 acyl carrier protein compare
AO353_06320 -0.6 -2.1 AsnC family transcriptional regulator compare
AO353_16740 -0.6 -1.9 phage tail protein compare
AO353_21410 -0.6 -1.0 hypothetical protein compare
AO353_06795 -0.6 -1.1 Isochorismatase compare
AO353_08080 -0.6 -2.9 chemotaxis protein compare
AO353_14405 -0.6 -4.4 ATPase compare
AO353_08100 -0.6 -1.9 chemotaxis protein CheY compare
AO353_02720 -0.6 -2.9 cysteine synthase compare
AO353_04180 -0.6 -3.8 glycerol kinase compare
AO353_27090 -0.6 -1.1 hypothetical protein compare
AO353_08975 -0.6 -2.9 heme biosynthesis protein HemY compare
AO353_05150 -0.6 -2.0 ABC transporter ATP-binding protein compare
AO353_02990 -0.6 -2.3 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_25385 -0.6 -1.6 molybdenum cofactor biosynthesis protein MoaC compare
AO353_00605 -0.6 -3.0 cytochrome C oxidase Cbb3 compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in temperature experiments