Experiment set6IT051 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB 20C

200 most important genes:

  gene name fitness t score description  
AO353_24130 -4.5 -5.3 hypothetical protein compare
AO353_00825 -3.1 -6.8 porin compare
AO353_21625 -3.0 -4.0 Fe/S biogenesis protein NfuA compare
AO353_07355 -2.9 -7.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_14220 -2.9 -2.7 ribosomal large subunit pseudouridine synthase D compare
AO353_13100 -2.8 -3.3 GTPase RsgA compare
AO353_10455 -2.7 -3.2 tRNA modification GTPase MnmE compare
AO353_00430 -2.6 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12115 -2.3 -3.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14420 -2.2 -6.2 molecular chaperone DnaK compare
AO353_18540 -2.2 -3.8 pseudouridine synthase compare
AO353_12345 -2.2 -3.2 twin-arginine protein translocation system subunit TatC compare
AO353_00650 -2.0 -4.0 cytochrome biogenesis protein compare
AO353_03585 -2.0 -4.0 ATP-dependent DNA helicase RuvA compare
AO353_02250 -2.0 -4.7 chorismate synthase compare
AO353_14400 -2.0 -5.2 Fis family transcriptional regulator compare
AO353_00515 -2.0 -4.5 hypothetical protein compare
AO353_07315 -2.0 -3.7 rRNA methyltransferase compare
AO353_00495 -1.9 -3.6 DNA topoisomerase I compare
AO353_06050 -1.9 -7.8 exodeoxyribonuclease V subunit gamma compare
AO353_20175 -1.9 -4.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_09000 -1.8 -6.4 argininosuccinate lyase compare
AO353_13225 -1.8 -4.3 50S ribosomal protein L9 compare
AO353_02070 -1.8 -5.8 prephenate dehydratase compare
AO353_10670 -1.8 -6.8 shikimate dehydrogenase compare
AO353_14740 -1.7 -4.4 GTP-binding protein compare
AO353_06040 -1.7 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_27695 -1.6 -7.5 isocitrate dehydrogenase compare
AO353_14940 -1.6 -4.2 malate:quinone oxidoreductase compare
AO353_03615 -1.6 -4.0 cold-shock protein compare
AO353_08165 -1.6 -3.8 pyrroline-5-carboxylate reductase compare
AO353_07645 -1.6 -2.1 sarcosine oxidase subunit gamma compare
AO353_10780 -1.6 -2.2 DNA-binding protein compare
AO353_09040 -1.5 -2.5 diaminopimelate epimerase compare
AO353_14495 -1.5 -9.4 acetolactate synthase 3 catalytic subunit compare
AO353_20170 -1.5 -5.6 trigger factor compare
AO353_11730 -1.5 -8.8 glutamate--cysteine ligase compare
AO353_11530 -1.5 -7.5 diguanylate cyclase compare
AO353_09890 -1.5 -5.2 phosphate ABC transporter ATP-binding protein compare
AO353_05625 -1.5 -1.9 transcription elongation factor GreA compare
AO353_06850 -1.4 -4.9 MFS transporter compare
AO353_18425 -1.4 -4.8 hypothetical protein compare
AO353_08980 -1.4 -3.6 heme biosynthesis operon protein HemX compare
AO353_11165 -1.4 -7.8 hypothetical protein compare
AO353_18715 -1.4 -1.6 histidine kinase compare
AO353_13200 -1.4 -9.0 exoribonuclease R compare
AO353_04520 -1.4 -4.9 elongation factor 4 compare
AO353_04355 -1.4 -2.0 homoserine dehydrogenase compare
AO353_13070 -1.4 -6.4 phosphoserine phosphatase compare
AO353_03795 -1.3 -4.3 fumarate hydratase compare
AO353_26055 -1.3 -2.3 hypothetical protein compare
AO353_12500 -1.3 -2.1 shikimate kinase compare
AO353_13925 -1.3 -2.5 XRE family transcriptional regulator compare
AO353_14395 -1.3 -4.1 poly(A) polymerase compare
AO353_03710 -1.3 -2.4 formyltetrahydrofolate deformylase compare
AO353_27720 -1.3 -4.3 cupin compare
AO353_19145 -1.2 -4.2 protease HtpX compare
AO353_10945 -1.2 -2.9 cytochrome C compare
AO353_13140 -1.2 -5.3 tRNA dimethylallyltransferase compare
AO353_14500 -1.2 -5.5 acetolactate synthase 3 regulatory subunit compare
AO353_16440 -1.2 -3.3 ArsC family transcriptional regulator compare
AO353_04175 -1.2 -4.3 glycerol uptake facilitator GlpF compare
AO353_07075 -1.2 -3.9 elongation factor Tu compare
AO353_16940 -1.2 -4.8 deoxycytidine triphosphate deaminase compare
AO353_09240 -1.2 -3.1 acetylglutamate kinase compare
AO353_06495 -1.2 -4.4 gamma-glutamyl phosphate reductase compare
AO353_19605 -1.2 -2.4 hypothetical protein compare
AO353_12880 -1.2 -1.9 ADP-heptose--LPS heptosyltransferase compare
AO353_14775 -1.2 -5.4 hypothetical protein compare
AO353_07850 -1.2 -3.7 ATP-dependent RNA helicase compare
AO353_08685 -1.1 -6.3 N-acetylglutamate synthase compare
AO353_19360 -1.1 -2.4 peroxiredoxin compare
AO353_22500 -1.1 -2.2 hypothetical protein compare
AO353_12930 -1.1 -2.7 GlcNAc-PI de-N-acetylase compare
AO353_12105 -1.1 -5.5 peptidase S41 compare
AO353_13220 -1.1 -5.2 hypothetical protein compare
AO353_00635 -1.1 -2.9 hypothetical protein compare
AO353_04565 -1.1 -4.5 nucleoid-associated protein compare
AO353_15185 -1.1 -3.7 ATPase compare
AO353_06045 -1.1 -5.5 exodeoxyribonuclease V subunit beta compare
AO353_12690 -1.1 -1.4 acyl carrier protein compare
AO353_12420 -1.1 -3.2 predicted FeS cluster maintenance protein (from data) compare
AO353_08880 -1.0 -2.0 exopolyphosphatase compare
AO353_07105 -1.0 -1.6 biotin--protein ligase compare
AO353_05420 -1.0 -1.6 peptide chain release factor 3 compare
AO353_04360 -1.0 -4.7 protein-disulfide isomerase compare
AO353_27650 -1.0 -3.6 cell division protein FtsK compare
AO353_26550 -1.0 -1.9 hypothetical protein compare
AO353_13580 -1.0 -2.9 copper resistance protein CopZ compare
AO353_20865 -1.0 -2.2 cold-shock protein compare
AO353_07155 -0.9 -4.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02075 -0.9 -5.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08910 -0.9 -2.3 hypothetical protein compare
AO353_12145 -0.9 -3.1 nitrogen regulation protein NR(I) compare
AO353_17675 -0.9 -3.8 hypothetical protein compare
AO353_20565 -0.9 -1.5 tRNA-Ala compare
AO353_24440 -0.9 -1.5 reactive intermediate/imine deaminase compare
AO353_11775 -0.9 -4.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_02020 -0.9 -3.5 hypothetical protein compare
AO353_15250 -0.9 -2.5 cytochrome B compare
AO353_09045 -0.9 -1.9 hypothetical protein compare
AO353_07325 -0.9 -1.4 diadenosine tetraphosphatase compare
AO353_02710 -0.9 -6.5 (p)ppGpp synthetase compare
AO353_03410 -0.9 -1.9 chemotaxis protein CheY compare
AO353_00885 -0.9 -2.5 3-methylitaconate isomerase compare
AO353_10710 -0.9 -3.7 tryptophan synthase subunit beta compare
AO353_00845 -0.9 -4.9 CmaX protein compare
AO353_05690 -0.9 -2.7 SsrA-binding protein compare
AO353_15905 -0.9 -4.4 outer membrane protein assembly factor BamB compare
AO353_08265 -0.9 -4.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_21645 -0.9 -1.8 cobalt transporter compare
AO353_01975 -0.9 -5.1 glycosyl transferase compare
AO353_20410 -0.9 -2.1 hypothetical protein compare
AO353_03715 -0.8 -1.8 H-NS histone compare
AO353_16805 -0.8 -3.6 recombinase RecA compare
AO353_16425 -0.8 -1.2 Fe-S metabolism protein SufE compare
AO353_12090 -0.8 -1.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_11750 -0.8 -1.7 ATPase compare
AO353_19060 -0.8 -3.3 CysB family transcriptional regulator compare
AO353_03590 -0.8 -2.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_08875 -0.8 -1.2 amino acid ABC transporter ATP-binding protein compare
AO353_08015 -0.8 -4.5 5,10-methylenetetrahydrofolate reductase compare
AO353_16835 -0.8 -1.3 LuxR family transcriptional regulator compare
AO353_26645 -0.8 -2.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_02600 -0.8 -1.5 alpha-ribazole phosphatase compare
AO353_20140 -0.8 -2.4 hypothetical protein compare
AO353_13395 -0.8 -1.5 protein hupE compare
AO353_08510 -0.8 -3.0 3-phosphoglycerate dehydrogenase compare
AO353_20340 -0.8 -2.6 gamma-carboxygeranoyl-CoA hydratase compare
AO353_03670 -0.8 -3.1 ornithine acetyltransferase compare
AO353_13160 -0.8 -1.6 membrane protease HflC compare
AO353_17410 -0.8 -1.7 arylsulfate sulfotransferase compare
AO353_22920 -0.8 -3.2 GntR family transcriptional regulator compare
AO353_21425 -0.8 -2.3 hypothetical protein compare
AO353_00460 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_20185 -0.7 -3.8 DNA-binding protein compare
AO353_15490 -0.7 -1.6 hypothetical protein compare
AO353_07610 -0.7 -1.2 hypothetical protein compare
AO353_15445 -0.7 -2.2 disulfide bond formation protein B compare
AO353_02000 -0.7 -2.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_03815 -0.7 -1.2 heme utilization protein compare
AO353_15875 -0.7 -3.1 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_03830 -0.7 -1.5 antibiotic biosynthesis monooxygenase compare
AO353_02685 -0.7 -2.5 phosphoribosylglycinamide formyltransferase compare
AO353_14485 -0.7 -0.8 pseudouridine synthase compare
AO353_13640 -0.7 -2.7 histidine kinase compare
AO353_01435 -0.7 -2.1 protein tyrosine phosphatase compare
AO353_26370 -0.7 -2.6 hypothetical protein compare
AO353_14945 -0.7 -2.3 hypothetical protein compare
AO353_18325 -0.7 -1.9 hypothetical protein compare
AO353_12130 -0.7 -2.6 preprotein translocase subunit SecB compare
AO353_00510 -0.7 -2.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_10055 -0.7 -5.2 DNA helicase II compare
AO353_28210 -0.7 -2.1 2-haloalkanoic acid dehalogenase compare
AO353_29270 -0.7 -2.3 type VI secretion system protein compare
AO353_08115 -0.7 -3.3 energy transducer TonB compare
AO353_09900 -0.7 -4.8 phosphate ABC transporter permease compare
AO353_04220 -0.7 -3.2 chemotaxis protein CheY compare
AO353_08975 -0.7 -3.4 heme biosynthesis protein HemY compare
AO353_00505 -0.7 -2.0 3-ketoacyl-CoA thiolase compare
AO353_01355 -0.7 -4.1 3-oxoacyl-ACP synthase compare
AO353_15785 -0.7 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_14150 -0.7 -1.2 peptidylprolyl isomerase compare
AO353_27160 -0.7 -2.5 Pathogenicity locus compare
AO353_12150 -0.7 -2.6 histidine kinase compare
AO353_28200 -0.7 -2.5 ribosomal protein S3AE compare
AO353_08110 -0.7 -3.2 glutathione synthetase compare
AO353_14405 -0.7 -4.9 ATPase compare
AO353_02005 -0.7 -1.2 hypothetical protein compare
AO353_00750 -0.7 -2.5 GntR family transcriptional regulator compare
AO353_16745 -0.7 -1.1 ArsR family transcriptional regulator compare
AO353_18135 -0.7 -1.6 hypothetical protein compare
AO353_00310 -0.7 -4.1 transaldolase compare
AO353_02520 -0.7 -1.5 sodium transporter compare
AO353_04240 -0.7 -1.4 chemotaxis protein CheW compare
AO353_12915 -0.7 -3.7 carbamoyltransferase compare
AO353_10435 -0.7 -4.5 chromosome partitioning protein compare
AO353_13685 -0.7 -2.5 3-dehydroquinate dehydratase compare
AO353_13945 -0.7 -3.0 ubiquinol oxidase subunit II compare
AO353_22800 -0.7 -1.7 sulfite reductase compare
AO353_18305 -0.7 -2.6 RNA helicase compare
AO353_23400 -0.6 -1.3 hypothetical protein compare
AO353_13570 -0.6 -4.8 TonB-dependent receptor compare
AO353_20370 -0.6 -2.1 MerR family transcriptional regulator compare
AO353_01375 -0.6 -3.4 phosphate acyltransferase compare
AO353_19760 -0.6 -2.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_03360 -0.6 -3.4 glucose-6-phosphate dehydrogenase compare
AO353_19295 -0.6 -1.7 hypothetical protein compare
AO353_05230 -0.6 -3.7 ribonuclease G compare
AO353_22280 -0.6 -1.4 hypothetical protein compare
AO353_28935 -0.6 -1.5 ATPase compare
AO353_12045 -0.6 -2.6 iron transporter compare
AO353_06415 -0.6 -2.4 hypothetical protein compare
AO353_20590 -0.6 -1.5 hydrolase compare
AO353_26320 -0.6 -3.0 hypothetical protein compare
AO353_08545 -0.6 -2.7 thiol-disulfide isomerase compare
AO353_13865 -0.6 -1.5 hypothetical protein compare
AO353_01985 -0.6 -4.2 hypothetical protein compare
AO353_06480 -0.6 -1.5 50S rRNA methyltransferase compare
AO353_02060 -0.6 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in temperature experiments