Experiment set6IT050 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Fluorophosphate 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_300 -5.5 -3.8 CrcB protein compare
Pf6N2E2_4071 -5.2 -5.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3617 -4.6 -4.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4584 -4.3 -4.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_6140 -3.7 -1.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3941 -3.7 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5573 -3.6 -5.4 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_4803 -3.4 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2274 -3.4 -5.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4369 -3.3 -2.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2181 -3.3 -2.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3834 -3.1 -7.8 Lipoprotein NlpD compare
Pf6N2E2_5703 -3.1 -5.1 outer membrane protein H1 compare
Pf6N2E2_4585 -3.0 -12.6 Cell division protein FtsX compare
Pf6N2E2_2825 -2.9 -4.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5103 -2.8 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3782 -2.7 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2753 -2.6 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_156 -2.5 -2.9 Carbon storage regulator compare
Pf6N2E2_3839 -2.5 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3252 -2.5 -7.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3282 -2.5 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_238 -2.4 -2.3 hypothetical protein compare
Pf6N2E2_5647 -2.4 -5.5 Transcriptional regulator, TetR family compare
Pf6N2E2_5014 -2.4 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3607 -2.3 -7.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3833 -2.3 -4.3 hypothetical protein compare
Pf6N2E2_1056 -2.3 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5320 -2.2 -8.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3666 -2.2 -3.6 InaA protein compare
Pf6N2E2_5430 -2.1 -8.4 Transglycosylase, Slt family compare
Pf6N2E2_5150 -2.1 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2176 -2.1 -2.7 Amidases related to nicotinamidase compare
Pf6N2E2_5704 -2.1 -5.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3792 -2.0 -6.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3791 -2.0 -8.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2755 -2.0 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3303 -2.0 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3134 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_5321 -2.0 -6.6 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_664 -2.0 -2.1 Acetoin catabolism protein X compare
Pf6N2E2_3783 -2.0 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2278 -1.9 -11.4 Transcription-repair coupling factor compare
Pf6N2E2_3253 -1.9 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2127 -1.8 -4.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2384 -1.7 -2.8 CmpX compare
Pf6N2E2_5319 -1.7 -5.8 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2646 -1.7 -2.1 FIG00953416: hypothetical protein compare
Pf6N2E2_4451 -1.7 -4.4 FIG139438: lipoprotein B compare
Pf6N2E2_5494 -1.7 -3.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3634 -1.7 -2.3 Transporter compare
Pf6N2E2_5342 -1.6 -2.2 21 kDa hemolysin precursor compare
Pf6N2E2_241 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_4187 -1.6 -4.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1636 -1.6 -6.2 Ferrichrome-iron receptor compare
Pf6N2E2_5544 -1.6 -6.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3251 -1.6 -7.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5172 -1.6 -3.3 FOG: TPR repeat compare
Pf6N2E2_451 -1.6 -2.2 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5956 -1.6 -5.2 FIG004453: protein YceG like compare
Pf6N2E2_2261 -1.5 -5.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_6085 -1.5 -2.0 Aha1 domain superfamily compare
Pf6N2E2_3720 -1.5 -2.5 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1633 -1.5 -3.2 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_2822 -1.5 -5.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3460 -1.5 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4204 -1.5 -1.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5069 -1.5 -4.6 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1099 -1.5 -2.0 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_58 -1.5 -1.4 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_6047 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_5316 -1.5 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1081 -1.5 -1.7 probable membrane protein YPO3302 compare
Pf6N2E2_3713 -1.4 -1.3 Acyl carrier protein compare
Pf6N2E2_2823 -1.4 -4.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4999 -1.4 -4.2 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3842 -1.4 -2.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_987 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_546 -1.4 -1.7 FIG00966904: hypothetical protein compare
Pf6N2E2_3198 -1.4 -1.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5086 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_2984 -1.3 -2.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_1666 -1.3 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_3534 -1.3 -2.1 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2375 -1.3 -2.6 Response regulator NasT compare
Pf6N2E2_2795 -1.3 -1.3 putative exported protein compare
Pf6N2E2_3942 -1.3 -7.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5318 -1.3 -9.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3243 -1.3 -7.8 FIG067310: hypothetical protein compare
Pf6N2E2_5950 -1.3 -3.0 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3711 -1.3 -4.4 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf6N2E2_1634 -1.3 -3.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1502 -1.3 -1.9 Two-component system regulatory protein compare
Pf6N2E2_5242 -1.3 -1.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2510 -1.3 -3.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1617 -1.3 -1.2 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2201 -1.3 -3.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_3273 -1.2 -3.4 Metal transporter, ZIP family compare
Pf6N2E2_3305 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_4046 -1.2 -9.2 FIG00953482: hypothetical protein compare
Pf6N2E2_445 -1.2 -4.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2887 -1.2 -3.2 Aldose 1-epimerase compare
Pf6N2E2_1625 -1.2 -2.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5536 -1.2 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_1074 -1.2 -2.2 FIG00953356: hypothetical protein compare
Pf6N2E2_3841 -1.2 -3.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5671 -1.2 -2.2 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2513 -1.2 -2.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_502 -1.2 -3.0 hypothetical protein compare
Pf6N2E2_5943 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_2018 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_5155 -1.2 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5716 -1.2 -5.3 Cytochrome c-type biogenesis protein ResA compare
Pf6N2E2_5068 -1.2 -7.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5317 -1.2 -7.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3658 -1.2 -3.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2824 -1.2 -5.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2253 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_3271 -1.2 -1.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4418 -1.2 -0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3610 -1.2 -3.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_579 -1.2 -1.8 FIG00962753: hypothetical protein compare
Pf6N2E2_3726 -1.1 -2.9 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_5252 -1.1 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_3432 -1.1 -2.0 Ais protein, putative compare
Pf6N2E2_3258 -1.1 -2.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_288 -1.1 -1.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5160 -1.1 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4131 -1.1 -7.4 Sulfate permease compare
Pf6N2E2_1994 -1.1 -1.6 putative lipoprotein compare
Pf6N2E2_309 -1.1 -1.2 FIG00957702: hypothetical protein compare
Pf6N2E2_3611 -1.1 -1.4 HflC protein compare
Pf6N2E2_70 -1.1 -2.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4057 -1.1 -1.0 lipoprotein, putative compare
Pf6N2E2_3940 -1.1 -5.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4352 -1.1 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4591 -1.1 -3.3 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_1611 -1.0 -2.3 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_3201 -1.0 -2.7 Transcriptional regulator, MerR family compare
Pf6N2E2_4059 -1.0 -1.1 DNA-binding protein HU-alpha compare
Pf6N2E2_4146 -1.0 -2.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2857 -1.0 -2.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1337 -1.0 -2.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3715 -1.0 -3.5 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) compare
Pf6N2E2_1673 -1.0 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1156 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_2459 -1.0 -1.3 Organic hydroperoxide resistance protein compare
Pf6N2E2_3475 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_3062 -1.0 -1.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5560 -1.0 -1.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_1248 -1.0 -1.6 MutT/nudix family protein compare
Pf6N2E2_178 -1.0 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_756 -1.0 -3.5 hypothetical protein compare
Pf6N2E2_4372 -1.0 -3.5 FIG00460773: hypothetical protein compare
Pf6N2E2_2288 -1.0 -2.5 FIG00953423: hypothetical protein compare
Pf6N2E2_40 -1.0 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2506 -1.0 -6.5 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2514 -1.0 -2.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2045 -1.0 -1.6 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_3461 -1.0 -0.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3542 -1.0 -7.0 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_855 -1.0 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2912 -1.0 -1.0 FIG00954094: hypothetical protein compare
Pf6N2E2_4263 -1.0 -2.0 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_4615 -1.0 -1.5 type IV pili signal transduction protein PilI compare
Pf6N2E2_3521 -1.0 -4.2 Sensor histidine kinase/response regulator compare
Pf6N2E2_3829 -1.0 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1812 -1.0 -2.3 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_5739 -1.0 -1.0 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1656 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_2402 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_1211 -1.0 -1.1 Lactoylglutathione lyase compare
Pf6N2E2_1453 -0.9 -3.3 Xylose activator XylR (AraC family) compare
Pf6N2E2_2325 -0.9 -3.4 Recombination protein RecR compare
Pf6N2E2_6046 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_1534 -0.9 -1.4 Probable transmembrane protein compare
Pf6N2E2_3725 -0.9 -0.9 FIG085779: Lipoprotein compare
Pf6N2E2_924 -0.9 -1.6 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1987 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_5245 -0.9 -4.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4678 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_3095 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_2340 -0.9 -2.2 Transcriptional regulator, GntR family compare
Pf6N2E2_3717 -0.9 -3.0 Lysophospholipid acyltransferase compare
Pf6N2E2_62 -0.9 -2.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2223 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_1044 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4077 -0.9 -1.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_43 -0.9 -2.8 Histidine permease YuiF compare
Pf6N2E2_3221 -0.9 -2.5 FIG00352444: hypothetical protein compare
Pf6N2E2_2425 -0.9 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_724 -0.9 -1.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3573 -0.9 -2.5 HupE-UreJ family metal transporter compare
Pf6N2E2_3721 -0.9 -3.6 FIG021862: membrane protein, exporter compare
Pf6N2E2_237 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_5640 -0.9 -1.2 FIG00955597: hypothetical protein compare
Pf6N2E2_2258 -0.9 -4.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_622 -0.9 -1.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3712 -0.9 -4.1 Acyl carrier protein (ACP1) compare
Pf6N2E2_955 -0.9 -1.9 FIG00953508: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Fluorophosphate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Fluorophosphate across organisms