Experiment set6IT050 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Fluorophosphate 0.125 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5258 +2.7 17.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5257 +2.7 21.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2277 +1.5 2.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_469 +1.4 2.0 lipoprotein, putative compare
Pf6N2E2_2605 +1.3 6.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4414 +1.3 3.8 FIG00953808: hypothetical protein compare
Pf6N2E2_3899 +1.3 8.3 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_420 +1.3 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3663 +1.2 7.4 Glycosyl transferase compare
Pf6N2E2_2133 +1.2 6.3 Putative sulfate permease compare
Pf6N2E2_3240 +1.2 2.0 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5761 +1.1 1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2518 +1.1 3.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2314 +1.0 2.9 VapB protein (antitoxin to VapC) compare
Pf6N2E2_3770 +1.0 2.3 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4007 +1.0 3.7 FIG00956018: hypothetical protein compare
Pf6N2E2_2072 +1.0 3.6 hypothetical protein compare
Pf6N2E2_3661 +1.0 3.7 hypothetical protein compare
Pf6N2E2_5785 +1.0 2.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2527 +1.0 3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_6065 +1.0 2.2 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_342 +1.0 1.3 DNA-binding response regulator compare
Pf6N2E2_5156 +1.0 2.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3656 +1.0 5.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_1886 +0.9 1.8 hypothetical protein compare
Pf6N2E2_1776 +0.9 2.2 Chemotaxis protein CheD compare
Pf6N2E2_5728 +0.9 2.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_868 +0.9 2.7 Transcriptional regulator, HxlR family compare
Pf6N2E2_4963 +0.9 1.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_3074 +0.9 1.4 FIG00960973: hypothetical protein compare
Pf6N2E2_3283 +0.9 5.2 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_4052 +0.9 1.7 FIG00955481: hypothetical protein compare
Pf6N2E2_813 +0.9 2.9 Response regulator compare
Pf6N2E2_1834 +0.9 2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4773 +0.9 1.3 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_563 +0.9 4.2 Serine transporter compare
Pf6N2E2_1040 +0.9 1.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5236 +0.9 2.3 hypothetical protein compare
Pf6N2E2_1014 +0.9 1.8 Nitrate/nitrite transporter compare
Pf6N2E2_350 +0.9 1.8 Gfa-like protein compare
Pf6N2E2_4579 +0.9 1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1091 +0.9 1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_1288 +0.9 1.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5865 +0.9 6.2 Chaperone protein HtpG compare
Pf6N2E2_440 +0.9 1.7 FIG00954920: hypothetical protein compare
Pf6N2E2_5337 +0.9 3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1792 +0.9 2.8 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_2578 +0.8 1.8 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3293 +0.8 2.5 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_5153 +0.8 3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_2606 +0.8 3.7 hypothetical protein compare
Pf6N2E2_81 +0.8 2.0 hypothetical protein compare
Pf6N2E2_3277 +0.8 2.4 FagA protein compare
Pf6N2E2_442 +0.8 2.6 FIG00962345: hypothetical protein compare
Pf6N2E2_4494 +0.8 2.5 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_464 +0.8 1.3 Sensory histidine kinase QseC compare
Pf6N2E2_5312 +0.8 1.6 FIG00964214: hypothetical protein compare
Pf6N2E2_2373 +0.8 2.1 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_5237 +0.8 1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4465 +0.8 4.7 ChaC-related protein compare
Pf6N2E2_3255 +0.8 2.7 YrbA protein compare
Pf6N2E2_234 +0.7 2.4 FIG00454312: hypothetical protein compare
Pf6N2E2_4160 +0.7 1.2 Cytochrome c5 compare
Pf6N2E2_2417 +0.7 2.3 Sensor histidine kinase compare
Pf6N2E2_2306 +0.7 2.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3820 +0.7 2.6 hypothetical protein compare
Pf6N2E2_5825 +0.7 3.4 FIG00958237: hypothetical protein compare
Pf6N2E2_2440 +0.7 1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1596 +0.7 1.2 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_3664 +0.7 4.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1665 +0.7 2.0 hypothetical protein compare
Pf6N2E2_3612 +0.7 1.9 HflK protein compare
Pf6N2E2_2480 +0.7 1.3 FIG00957636: hypothetical protein compare
Pf6N2E2_2978 +0.7 3.5 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase compare
Pf6N2E2_4618 +0.7 2.6 Chemotaxis signal transduction protein compare
Pf6N2E2_315 +0.7 2.3 probable transmembrane protein compare
Pf6N2E2_4152 +0.7 4.2 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_1797 +0.7 1.7 Transcriptional regulator compare
Pf6N2E2_1092 +0.7 1.8 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_5730 +0.7 1.7 FIG00954480: hypothetical protein compare
Pf6N2E2_663 +0.7 2.1 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_5955 +0.7 2.9 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_3912 +0.7 1.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_4397 +0.7 2.4 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_1236 +0.7 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_5483 +0.7 3.1 hypothetical protein compare
Pf6N2E2_1783 +0.7 1.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_672 +0.7 1.9 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_947 +0.7 2.8 Multidrug efflux membrane fusion protein MexE compare
Pf6N2E2_2252 +0.7 2.2 NreA-like protein compare
Pf6N2E2_4742 +0.7 2.5 Glutathione S-transferase family protein compare
Pf6N2E2_2593 +0.7 3.6 Flagellar M-ring protein FliF compare
Pf6N2E2_1525 +0.6 2.4 Universal stress protein family 5 compare
Pf6N2E2_2640 +0.6 0.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3024 +0.6 1.7 Phage tail fibers compare
Pf6N2E2_1385 +0.6 1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_2103 +0.6 1.5 hypothetical protein compare
Pf6N2E2_2477 +0.6 1.6 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_146 +0.6 1.7 Transcriptional regulator, MarR family compare
Pf6N2E2_703 +0.6 2.6 Cytochrome c55X precursor NirC compare
Pf6N2E2_3743 +0.6 2.6 General secretion pathway protein G compare
Pf6N2E2_4121 +0.6 2.8 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_2844 +0.6 2.8 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_2465 +0.6 3.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3362 +0.6 2.2 hypothetical protein compare
Pf6N2E2_201 +0.6 1.9 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
Pf6N2E2_4531 +0.6 1.1 hypothetical protein compare
Pf6N2E2_1694 +0.6 1.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5626 +0.6 3.5 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf6N2E2_2940 +0.6 3.3 OmpA family protein compare
Pf6N2E2_828 +0.6 2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5810 +0.6 1.8 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_3885 +0.6 1.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3908 +0.6 2.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5917 +0.6 2.2 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
Pf6N2E2_968 +0.6 1.9 FIG00962395: hypothetical protein compare
Pf6N2E2_6045 +0.6 0.8 hypothetical protein compare
Pf6N2E2_1591 +0.6 2.3 hypothetical protein compare
Pf6N2E2_417 +0.6 1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_138 +0.6 1.8 Alpha/beta hydrolase fold (EC 3.8.1.5) compare
Pf6N2E2_160 +0.6 1.5 hypothetical protein compare
Pf6N2E2_311 +0.6 2.3 hypothetical protein compare
Pf6N2E2_615 +0.6 1.7 FIG00957600: hypothetical protein compare
Pf6N2E2_2636 +0.6 2.0 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1735 +0.6 1.0 PhnB protein compare
Pf6N2E2_5157 +0.6 4.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_434 +0.6 1.3 hypothetical protein compare
Pf6N2E2_595 +0.6 1.2 Arsenical resistance operon repressor compare
Pf6N2E2_1699 +0.6 1.4 FIG00955832: hypothetical protein compare
Pf6N2E2_1203 +0.6 1.2 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_3261 +0.6 1.8 hypothetical protein compare
Pf6N2E2_3325 +0.6 1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_4469 +0.6 3.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4435 +0.6 3.9 Regulator of sigma D compare
Pf6N2E2_1082 +0.6 1.5 CopG protein compare
Pf6N2E2_4391 +0.6 2.9 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_1012 +0.6 1.0 hypothetical protein compare
Pf6N2E2_258 +0.6 2.1 Nicotinamidase family protein YcaC compare
Pf6N2E2_5534 +0.6 2.3 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4024 +0.6 3.1 L-Proline/Glycine betaine transporter ProP compare
Pf6N2E2_1293 +0.6 1.1 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_4048 +0.6 2.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3847 +0.6 2.1 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_1842 +0.5 2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_5627 +0.5 3.1 Segregation and condensation protein A compare
Pf6N2E2_472 +0.5 2.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_5575 +0.5 3.2 Glycerol uptake facilitator protein compare
Pf6N2E2_2627 +0.5 2.7 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2161 +0.5 2.2 Conserved domain protein compare
Pf6N2E2_3737 +0.5 1.6 General secretion pathway protein M compare
Pf6N2E2_3569 +0.5 1.5 hypothetical protein compare
Pf6N2E2_3228 +0.5 2.9 N-acetylneuraminic acid outer membrane channel protein NanC compare
Pf6N2E2_647 +0.5 0.9 General secretion pathway protein G compare
Pf6N2E2_857 +0.5 2.0 hypothetical protein compare
Pf6N2E2_3825 +0.5 2.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_961 +0.5 1.4 FIG00954712: hypothetical protein compare
Pf6N2E2_96 +0.5 1.8 FIG011065: hypothetical protein compare
Pf6N2E2_180 +0.5 1.4 Transcriptional regulator, MerR family compare
Pf6N2E2_4163 +0.5 1.9 FIG00953549: hypothetical protein compare
Pf6N2E2_5768 +0.5 1.6 DNA recombination-dependent growth factor C compare
Pf6N2E2_3619 +0.5 3.5 NAD(P)HX epimerase / NAD(P)HX dehydratase compare
Pf6N2E2_3665 +0.5 0.6 serine/threonine protein kinase compare
Pf6N2E2_1313 +0.5 1.8 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
Pf6N2E2_4478 +0.5 3.0 FIG019278: hypothetical protein compare
Pf6N2E2_38 +0.5 2.7 FIG00954456: hypothetical protein compare
Pf6N2E2_2217 +0.5 1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5255 +0.5 3.7 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5863 +0.5 1.9 FIG00956080: hypothetical protein compare
Pf6N2E2_1178 +0.5 1.7 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_4984 +0.5 1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5695 +0.5 3.1 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_77 +0.5 2.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2552 +0.5 3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5661 +0.5 1.8 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_2309 +0.5 1.4 hypothetical protein compare
Pf6N2E2_2292 +0.5 1.9 Universal stress protein family COG0589 compare
Pf6N2E2_4654 +0.5 2.7 hypothetical protein compare
Pf6N2E2_2251 +0.5 2.0 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf6N2E2_4897 +0.5 1.7 hypothetical protein compare
Pf6N2E2_5546 +0.5 2.5 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_494 +0.5 1.2 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_4365 +0.5 2.7 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_5727 +0.5 2.5 FIG00955360: hypothetical protein compare
Pf6N2E2_879 +0.5 2.6 Cyanoglobin; Hemoglobin-like protein HbN compare
Pf6N2E2_2508 +0.5 1.5 hypothetical protein compare
Pf6N2E2_1957 +0.5 1.6 putative inner membrane protein compare
Pf6N2E2_5130 +0.5 0.9 hypothetical protein compare
Pf6N2E2_1318 +0.5 2.0 FIG00553873: hypothetical protein compare
Pf6N2E2_3849 +0.5 1.2 FIG00954739: hypothetical protein compare
Pf6N2E2_1023 +0.5 2.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_2535 +0.5 2.9 FIG00954136: hypothetical protein compare
Pf6N2E2_4499 +0.5 1.1 protein of unknown function DUF86 compare
Pf6N2E2_5246 +0.5 2.1 FIG00955938: hypothetical protein compare
Pf6N2E2_110 +0.5 2.6 Cellobiose phosphotransferase system YdjC-like protein compare
Pf6N2E2_1744 +0.5 1.8 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) compare
Pf6N2E2_642 +0.5 1.5 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_3632 +0.5 2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2313 +0.5 1.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_811 +0.5 1.9 Transcriptional regulator of various polyols utilization, AraC family compare
Pf6N2E2_639 +0.5 1.6 FIG01285020: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Fluorophosphate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Fluorophosphate across organisms