Experiment set6IT050 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB 10C

200 most important genes:

  gene name fitness t score description  
AO353_24130 -6.4 -4.4 hypothetical protein compare
AO353_07315 -4.1 -4.0 rRNA methyltransferase compare
AO353_00430 -3.3 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13100 -3.3 -3.8 GTPase RsgA compare
AO353_07850 -3.1 -6.2 ATP-dependent RNA helicase compare
AO353_00825 -3.0 -7.5 porin compare
AO353_00495 -2.8 -4.1 DNA topoisomerase I compare
AO353_18540 -2.6 -4.2 pseudouridine synthase compare
AO353_21625 -2.6 -3.6 Fe/S biogenesis protein NfuA compare
AO353_00515 -2.5 -5.0 hypothetical protein compare
AO353_12420 -2.5 -5.2 predicted FeS cluster maintenance protein (from data) compare
AO353_12115 -2.5 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_10670 -2.4 -7.7 shikimate dehydrogenase compare
AO353_07355 -2.4 -8.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13200 -2.3 -13.5 exoribonuclease R compare
AO353_12880 -2.2 -4.1 ADP-heptose--LPS heptosyltransferase compare
AO353_27720 -2.2 -6.6 cupin compare
AO353_02250 -2.2 -4.5 chorismate synthase compare
AO353_12500 -2.2 -2.9 shikimate kinase compare
AO353_14975 -2.2 -6.3 hypothetical protein compare
AO353_13140 -2.1 -8.1 tRNA dimethylallyltransferase compare
AO353_03710 -2.0 -4.4 formyltetrahydrofolate deformylase compare
AO353_14940 -2.0 -5.1 malate:quinone oxidoreductase compare
AO353_13225 -1.9 -4.7 50S ribosomal protein L9 compare
AO353_14400 -1.9 -5.7 Fis family transcriptional regulator compare
AO353_00650 -1.8 -3.9 cytochrome biogenesis protein compare
AO353_14150 -1.8 -2.7 peptidylprolyl isomerase compare
AO353_14220 -1.8 -2.4 ribosomal large subunit pseudouridine synthase D compare
AO353_02070 -1.8 -6.4 prephenate dehydratase compare
AO353_14420 -1.8 -5.5 molecular chaperone DnaK compare
AO353_14395 -1.8 -5.7 poly(A) polymerase compare
AO353_14495 -1.8 -10.9 acetolactate synthase 3 catalytic subunit compare
AO353_05210 -1.7 -5.7 hypothetical protein compare
AO353_12345 -1.7 -3.0 twin-arginine protein translocation system subunit TatC compare
AO353_07325 -1.7 -2.5 diadenosine tetraphosphatase compare
AO353_11730 -1.7 -10.3 glutamate--cysteine ligase compare
AO353_06040 -1.7 -4.6 exodeoxyribonuclease V subunit alpha compare
AO353_09890 -1.7 -5.8 phosphate ABC transporter ATP-binding protein compare
AO353_12045 -1.6 -5.4 iron transporter compare
AO353_08165 -1.6 -3.4 pyrroline-5-carboxylate reductase compare
AO353_08265 -1.6 -6.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_20865 -1.6 -3.0 cold-shock protein compare
AO353_18305 -1.6 -4.0 RNA helicase compare
AO353_06455 -1.6 -3.3 D-alanyl-D-alanine carboxypeptidase compare
AO353_04355 -1.6 -2.0 homoserine dehydrogenase compare
AO353_09135 -1.5 -2.8 cytochrome C compare
AO353_15250 -1.5 -4.1 cytochrome B compare
AO353_11770 -1.4 -2.5 molecular chaperone Hsp33 compare
AO353_06480 -1.4 -2.4 50S rRNA methyltransferase compare
AO353_09040 -1.4 -2.4 diaminopimelate epimerase compare
AO353_09720 -1.4 -1.9 hypothetical protein compare
AO353_04520 -1.4 -4.6 elongation factor 4 compare
AO353_06050 -1.4 -6.9 exodeoxyribonuclease V subunit gamma compare
AO353_07445 -1.4 -1.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_20170 -1.4 -5.5 trigger factor compare
AO353_14500 -1.4 -6.3 acetolactate synthase 3 regulatory subunit compare
AO353_27695 -1.4 -7.0 isocitrate dehydrogenase compare
AO353_07155 -1.4 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_06045 -1.3 -6.8 exodeoxyribonuclease V subunit beta compare
AO353_11530 -1.3 -8.2 diguanylate cyclase compare
AO353_09050 -1.3 -4.1 recombinase XerC compare
AO353_11775 -1.3 -6.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_08880 -1.3 -2.5 exopolyphosphatase compare
AO353_08115 -1.3 -5.9 energy transducer TonB compare
AO353_09900 -1.3 -8.2 phosphate ABC transporter permease compare
AO353_03795 -1.3 -3.4 fumarate hydratase compare
AO353_03615 -1.2 -3.1 cold-shock protein compare
AO353_13070 -1.2 -6.1 phosphoserine phosphatase compare
AO353_02075 -1.2 -6.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20565 -1.2 -2.3 tRNA-Ala compare
AO353_11165 -1.2 -7.8 hypothetical protein compare
AO353_14740 -1.2 -3.7 GTP-binding protein compare
AO353_09000 -1.2 -5.1 argininosuccinate lyase compare
AO353_13925 -1.2 -2.0 XRE family transcriptional regulator compare
AO353_13220 -1.1 -6.0 hypothetical protein compare
AO353_00460 -1.1 -3.1 TetR family transcriptional regulator compare
AO353_21640 -1.1 -2.3 cobalt transporter compare
AO353_04175 -1.1 -4.2 glycerol uptake facilitator GlpF compare
AO353_04190 -1.1 -2.0 glycerol-3-phosphate dehydrogenase compare
AO353_18425 -1.1 -4.3 hypothetical protein compare
AO353_10945 -1.1 -3.0 cytochrome C compare
AO353_03585 -1.1 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_16805 -1.1 -5.1 recombinase RecA compare
AO353_03360 -1.1 -6.0 glucose-6-phosphate dehydrogenase compare
AO353_05690 -1.0 -3.4 SsrA-binding protein compare
AO353_00635 -1.0 -2.9 hypothetical protein compare
AO353_09275 -1.0 -2.9 DNA-directed RNA polymerase subunit omega compare
AO353_09895 -1.0 -5.5 phosphate ABC transporter permease compare
AO353_02060 -1.0 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_16940 -1.0 -4.5 deoxycytidine triphosphate deaminase compare
AO353_17035 -1.0 -3.5 hypothetical protein compare
AO353_14405 -1.0 -7.3 ATPase compare
AO353_07075 -1.0 -4.1 elongation factor Tu compare
AO353_09150 -1.0 -3.5 cytochrome C2 compare
AO353_06265 -1.0 -5.2 DEAD/DEAH box helicase compare
AO353_02940 -1.0 -2.2 DNA-binding protein compare
AO353_17435 -1.0 -4.4 hypothetical protein compare
AO353_11945 -1.0 -1.3 4-oxalocrotonate tautomerase compare
AO353_01355 -0.9 -5.4 3-oxoacyl-ACP synthase compare
AO353_10430 -0.9 -3.2 chromosome partitioning protein ParB compare
AO353_12105 -0.9 -5.2 peptidase S41 compare
AO353_02020 -0.9 -4.0 hypothetical protein compare
AO353_22930 -0.9 -2.9 hypothetical protein compare
AO353_05625 -0.9 -1.3 transcription elongation factor GreA compare
AO353_03590 -0.9 -3.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_00890 -0.9 -3.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_08685 -0.9 -5.5 N-acetylglutamate synthase compare
AO353_15555 -0.9 -3.6 fumarylacetoacetase compare
AO353_03830 -0.9 -2.4 antibiotic biosynthesis monooxygenase compare
AO353_09240 -0.9 -2.7 acetylglutamate kinase compare
AO353_19085 -0.9 -2.3 organic hydroperoxide resistance protein compare
AO353_02660 -0.8 -3.2 peptidase P60 compare
AO353_02600 -0.8 -2.0 alpha-ribazole phosphatase compare
AO353_14775 -0.8 -4.3 hypothetical protein compare
AO353_15170 -0.8 -1.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_19145 -0.8 -3.2 protease HtpX compare
AO353_04105 -0.8 -5.1 argininosuccinate synthase compare
AO353_08345 -0.8 -5.1 dihydroxy-acid dehydratase compare
AO353_08910 -0.8 -1.9 hypothetical protein compare
AO353_10445 -0.8 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_12935 -0.8 -2.6 glycosyltransferase compare
AO353_04220 -0.8 -3.6 chemotaxis protein CheY compare
AO353_15725 -0.8 -2.5 hypothetical protein compare
AO353_12090 -0.8 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_15905 -0.8 -4.1 outer membrane protein assembly factor BamB compare
AO353_19670 -0.8 -2.3 nicotinamidase compare
AO353_15445 -0.8 -2.5 disulfide bond formation protein B compare
AO353_23385 -0.8 -4.5 trans-2-enoyl-CoA reductase compare
AO353_28425 -0.8 -2.3 TetR family transcriptional regulator compare
AO353_15185 -0.8 -3.1 ATPase compare
AO353_00510 -0.8 -3.2 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_24560 -0.7 -2.4 transcriptional regulator compare
AO353_02710 -0.7 -5.5 (p)ppGpp synthetase compare
AO353_27650 -0.7 -2.7 cell division protein FtsK compare
AO353_19360 -0.7 -2.2 peroxiredoxin compare
AO353_17675 -0.7 -3.3 hypothetical protein compare
AO353_01375 -0.7 -3.6 phosphate acyltransferase compare
AO353_03100 -0.7 -1.6 XRE family transcriptional regulator compare
AO353_20800 -0.7 -0.9 hypothetical protein compare
AO353_20185 -0.7 -3.0 DNA-binding protein compare
AO353_06495 -0.7 -2.7 gamma-glutamyl phosphate reductase compare
AO353_12145 -0.7 -2.7 nitrogen regulation protein NR(I) compare
AO353_14115 -0.7 -3.7 gamma-glutamyl kinase compare
AO353_13580 -0.7 -2.3 copper resistance protein CopZ compare
AO353_01975 -0.7 -4.2 glycosyl transferase compare
AO353_06850 -0.7 -2.5 MFS transporter compare
AO353_19515 -0.7 -2.9 haloacid dehalogenase compare
AO353_18715 -0.7 -1.2 histidine kinase compare
AO353_19290 -0.7 -2.0 molybdenum cofactor sulfurase compare
AO353_12650 -0.7 -1.2 hypothetical protein compare
AO353_09260 -0.7 -3.9 ribonuclease PH compare
AO353_08030 -0.7 -4.6 DEAD/DEAH box helicase compare
AO353_24120 -0.7 -1.4 hypothetical protein compare
AO353_00845 -0.7 -3.7 CmaX protein compare
AO353_10055 -0.7 -5.1 DNA helicase II compare
AO353_00835 -0.7 -3.4 transporter compare
AO353_02090 -0.7 -4.2 N-ethylammeline chlorohydrolase compare
AO353_04055 -0.7 -1.6 methionine--tRNA ligase compare
AO353_09320 -0.7 -4.5 ATP-dependent DNA helicase RecG compare
AO353_26315 -0.6 -2.7 hypothetical protein compare
AO353_10495 -0.6 -2.2 serine hydroxymethyltransferase compare
AO353_02975 -0.6 -1.7 aspartate kinase compare
AO353_14915 -0.6 -2.1 (2Fe-2S)-binding protein compare
AO353_00750 -0.6 -2.5 GntR family transcriptional regulator compare
AO353_08510 -0.6 -3.0 3-phosphoglycerate dehydrogenase compare
AO353_07595 -0.6 -2.5 transcriptional regulator compare
AO353_15900 -0.6 -1.6 GTP-binding protein compare
AO353_02520 -0.6 -1.6 sodium transporter compare
AO353_08645 -0.6 -1.7 transporter compare
AO353_10455 -0.6 -1.4 tRNA modification GTPase MnmE compare
AO353_08015 -0.6 -3.8 5,10-methylenetetrahydrofolate reductase compare
AO353_04365 -0.6 -2.4 recombinase XerD compare
AO353_10710 -0.6 -2.8 tryptophan synthase subunit beta compare
AO353_20340 -0.6 -1.9 gamma-carboxygeranoyl-CoA hydratase compare
AO353_28110 -0.6 -2.6 TetR family transcriptional regulator compare
AO353_20175 -0.6 -2.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_10705 -0.6 -2.5 tryptophan synthase subunit alpha compare
AO353_16820 -0.6 -1.4 hypothetical protein compare
AO353_05900 -0.6 -3.1 permease DsdX compare
AO353_28330 -0.6 -2.6 carbon-nitrogen hydrolase compare
AO353_02685 -0.6 -1.9 phosphoribosylglycinamide formyltransferase compare
AO353_05800 -0.6 -2.8 hypothetical protein compare
AO353_23400 -0.6 -1.3 hypothetical protein compare
AO353_25955 -0.6 -2.1 NIPSNAP family containing protein compare
AO353_03250 -0.6 -1.4 gluconokinase compare
AO353_27160 -0.6 -2.2 Pathogenicity locus compare
AO353_08975 -0.6 -3.2 heme biosynthesis protein HemY compare
AO353_09155 -0.6 -3.5 amino acid dehydrogenase compare
AO353_23425 -0.6 -1.8 3-demethylubiquinone-9 3-methyltransferase compare
AO353_08980 -0.6 -2.0 heme biosynthesis operon protein HemX compare
AO353_04360 -0.6 -2.5 protein-disulfide isomerase compare
AO353_05535 -0.6 -1.3 tRNA-Thr compare
AO353_22045 -0.6 -2.7 molybdenum cofactor biosynthesis protein MoaA compare
AO353_27550 -0.6 -1.1 hypothetical protein compare
AO353_09315 -0.6 -3.7 LysR family transcriptional regulator compare
AO353_00355 -0.6 -1.2 transcriptional regulator compare
AO353_20495 -0.6 -1.1 NUDIX hydrolase compare
AO353_15490 -0.6 -1.4 hypothetical protein compare
AO353_26945 -0.5 -0.9 transcriptional regulator compare
AO353_18270 -0.5 -2.3 peptidylprolyl isomerase compare


Specific Phenotypes

For 1 genes in this experiment