Experiment set6IT049 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium perchlorate monohydrate 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -4.0 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3835 -3.3 -5.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2574 -3.2 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_3611 -2.9 -2.1 HflC protein compare
Pf6N2E2_2753 -2.9 -2.8 HtrA protease/chaperone protein compare
Pf6N2E2_5001 -2.8 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5527 -2.7 -2.6 Cold shock protein CspC compare
Pf6N2E2_3617 -2.5 -4.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4057 -2.5 -1.6 lipoprotein, putative compare
Pf6N2E2_1116 -2.5 -2.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_5499 -2.4 -1.6 hypothetical protein compare
Pf6N2E2_2825 -2.3 -4.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5103 -2.1 -1.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5006 -2.1 -5.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5160 -2.0 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3782 -2.0 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_127 -1.9 -2.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_2756 -1.9 -6.1 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3303 -1.9 -4.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5771 -1.9 -7.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2509 -1.9 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5508 -1.8 -2.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4206 -1.7 -2.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1806 -1.7 -2.7 hypothetical protein compare
Pf6N2E2_5544 -1.7 -6.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2217 -1.7 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2510 -1.7 -4.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3834 -1.7 -5.9 Lipoprotein NlpD compare
Pf6N2E2_3088 -1.7 -1.7 hypothetical protein compare
Pf6N2E2_241 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_4204 -1.6 -1.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_451 -1.6 -2.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_2646 -1.6 -2.1 FIG00953416: hypothetical protein compare
Pf6N2E2_4585 -1.6 -8.7 Cell division protein FtsX compare
Pf6N2E2_2824 -1.6 -7.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5993 -1.6 -2.8 FIG00957412: hypothetical protein compare
Pf6N2E2_3252 -1.6 -6.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3761 -1.6 -10.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3783 -1.5 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_6140 -1.5 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5555 -1.5 -1.6 Cold shock protein CspA compare
Pf6N2E2_2970 -1.5 -3.1 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_3461 -1.5 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5316 -1.5 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3839 -1.5 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2755 -1.5 -1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5252 -1.5 -1.9 FIG00956396: hypothetical protein compare
Pf6N2E2_1124 -1.4 -2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4047 -1.4 -4.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5780 -1.4 -5.9 Periplasmic protease compare
Pf6N2E2_4918 -1.4 -2.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4305 -1.4 -1.5 FIG00959590: hypothetical protein compare
Pf6N2E2_4417 -1.4 -3.8 Protein of unknown function DUF484 compare
Pf6N2E2_2176 -1.4 -2.2 Amidases related to nicotinamidase compare
Pf6N2E2_4153 -1.3 -1.2 Sensory box histidine kinase compare
Pf6N2E2_3253 -1.3 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_156 -1.3 -1.3 Carbon storage regulator compare
Pf6N2E2_5841 -1.3 -1.3 GlcG protein compare
Pf6N2E2_3842 -1.3 -2.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_384 -1.3 -2.7 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2413 -1.3 -1.9 FIG074102: hypothetical protein compare
Pf6N2E2_5671 -1.3 -2.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4579 -1.3 -1.7 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4272 -1.3 -2.7 putative membrane protein compare
Pf6N2E2_5453 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_1508 -1.2 -2.5 DNA-binding response regulator compare
Pf6N2E2_1932 -1.2 -3.2 Transcriptional regulator, IclR family compare
Pf6N2E2_3569 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_4584 -1.2 -1.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5245 -1.2 -4.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_16 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_2712 -1.2 -4.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_5990 -1.2 -2.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2018 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_5766 -1.2 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_648 -1.2 -0.9 General secretion pathway protein K compare
Pf6N2E2_423 -1.2 -1.8 Putative phosphatase YfbT compare
Pf6N2E2_3039 -1.2 -3.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2507 -1.1 -3.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4611 -1.1 -2.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2752 -1.1 -4.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5171 -1.1 -7.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3221 -1.1 -2.9 FIG00352444: hypothetical protein compare
Pf6N2E2_309 -1.1 -1.6 FIG00957702: hypothetical protein compare
Pf6N2E2_2281 -1.1 -2.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3833 -1.1 -3.4 hypothetical protein compare
Pf6N2E2_2447 -1.1 -5.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2501 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_2925 -1.1 -2.3 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) compare
Pf6N2E2_1534 -1.1 -1.7 Probable transmembrane protein compare
Pf6N2E2_189 -1.1 -1.9 regulatory protein, putative compare
Pf6N2E2_5567 -1.1 -2.1 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_3661 -1.0 -3.0 hypothetical protein compare
Pf6N2E2_3074 -1.0 -1.1 FIG00960973: hypothetical protein compare
Pf6N2E2_5219 -1.0 -4.8 FIG140336: TPR domain protein compare
Pf6N2E2_4159 -1.0 -2.6 Cytochrome c4 compare
Pf6N2E2_2106 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_2074 -1.0 -1.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2746 -1.0 -3.2 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_295 -1.0 -1.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_3568 -1.0 -2.3 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4416 -1.0 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_2225 -1.0 -1.7 FIG00953489: hypothetical protein compare
Pf6N2E2_3062 -1.0 -2.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5068 -1.0 -5.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3349 -1.0 -1.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1656 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_2261 -1.0 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_2847 -1.0 -4.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_572 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_3744 -1.0 -1.8 General secretion pathway protein F compare
Pf6N2E2_5342 -1.0 -1.3 21 kDa hemolysin precursor compare
Pf6N2E2_1747 -1.0 -2.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2402 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_4455 -0.9 -3.3 Glutamate transport ATP-binding protein compare
Pf6N2E2_3285 -0.9 -1.7 Rod shape-determining protein MreD compare
Pf6N2E2_3040 -0.9 -3.2 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3537 -0.9 -2.7 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_504 -0.9 -2.2 DNA-binding response regulator compare
Pf6N2E2_664 -0.9 -1.4 Acetoin catabolism protein X compare
Pf6N2E2_5704 -0.9 -3.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2340 -0.9 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_358 -0.9 -2.2 Haloacid dehalogenase, type II compare
Pf6N2E2_5128 -0.9 -2.0 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5821 -0.9 -3.8 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf6N2E2_1611 -0.9 -1.9 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_3060 -0.9 -1.0 Outer membrane protein H precursor compare
Pf6N2E2_6100 -0.9 -1.3 tRNA-Val-TAC compare
Pf6N2E2_2823 -0.9 -2.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2161 -0.9 -1.8 Conserved domain protein compare
Pf6N2E2_3515 -0.9 -4.0 Probable transmembrane protein compare
Pf6N2E2_1779 -0.9 -1.1 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_6164 -0.9 -0.9 tRNA-Val-TAC compare
Pf6N2E2_3610 -0.9 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_43 -0.9 -3.1 Histidine permease YuiF compare
Pf6N2E2_2496 -0.9 -1.2 FIG00956575: hypothetical protein compare
Pf6N2E2_5137 -0.9 -2.6 FIG00956650: hypothetical protein compare
Pf6N2E2_5746 -0.8 -1.8 Cobalamin synthase compare
Pf6N2E2_5804 -0.8 -2.4 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Pf6N2E2_88 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2586 -0.8 -1.3 Hpt domain protein compare
Pf6N2E2_3041 -0.8 -3.1 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf6N2E2_6035 -0.8 -1.3 alpha/beta hydrolase fold compare
Pf6N2E2_4638 -0.8 -1.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2716 -0.8 -2.0 FIG00954793: hypothetical protein compare
Pf6N2E2_3642 -0.8 -3.4 lipoprotein, putative compare
Pf6N2E2_2335 -0.8 -2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_1022 -0.8 -1.9 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_5613 -0.8 -1.0 FIG00953674: hypothetical protein compare
Pf6N2E2_1456 -0.8 -2.7 D-xylose transport ATP-binding protein XylG compare
Pf6N2E2_5842 -0.8 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_5785 -0.8 -1.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_623 -0.8 -0.9 FIG00954674: hypothetical protein compare
Pf6N2E2_770 -0.8 -2.2 Ribosylnicotinamide kinase (EC 2.7.1.22) compare
Pf6N2E2_5172 -0.8 -1.3 FOG: TPR repeat compare
Pf6N2E2_1340 -0.8 -0.9 major pilin protein fimA compare
Pf6N2E2_3260 -0.8 -2.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_70 -0.8 -2.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2526 -0.8 -2.7 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4418 -0.8 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4413 -0.8 -3.3 FIG004064: hypothetical protein compare
Pf6N2E2_4810 -0.8 -3.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3763 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_2962 -0.8 -1.8 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2265 -0.8 -1.7 Copper tolerance protein compare
Pf6N2E2_1987 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_5345 -0.8 -3.5 LppC putative lipoprotein compare
Pf6N2E2_4025 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_2927 -0.8 -1.8 Putative signal peptide protein compare
Pf6N2E2_2010 -0.8 -0.7 hypothetical protein compare
Pf6N2E2_3940 -0.8 -4.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4052 -0.8 -1.0 FIG00955481: hypothetical protein compare
Pf6N2E2_4451 -0.8 -2.8 FIG139438: lipoprotein B compare
Pf6N2E2_4556 -0.8 -2.4 FIG00953078: hypothetical protein compare
Pf6N2E2_1743 -0.8 -1.4 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_1712 -0.8 -2.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1043 -0.8 -1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_4307 -0.8 -2.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3841 -0.8 -2.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_579 -0.8 -1.1 FIG00962753: hypothetical protein compare
Pf6N2E2_2012 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_218 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2274 -0.7 -2.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2218 -0.7 -1.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2143 -0.7 -2.2 Uncharacterized GST-like protein yncG compare
Pf6N2E2_2205 -0.7 -2.1 FIG033889: YebC paralog in Betaproteobacteria compare
Pf6N2E2_3849 -0.7 -1.4 FIG00954739: hypothetical protein compare
Pf6N2E2_5346 -0.7 -1.6 rRNA small subunit methyltransferase I compare
Pf6N2E2_5950 -0.7 -2.0 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4996 -0.7 -1.6 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_4187 -0.7 -2.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3282 -0.7 -1.1 FIG005080: Possible exported protein compare
Pf6N2E2_4993 -0.7 -1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5820 -0.7 -1.3 FIG00957914: hypothetical protein compare
Pf6N2E2_1694 -0.7 -0.9 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_4362 -0.7 -1.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3737 -0.7 -1.5 General secretion pathway protein M compare
Pf6N2E2_3638 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_3663 -0.7 -2.7 Glycosyl transferase compare
Pf6N2E2_443 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium perchlorate monohydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium perchlorate monohydrate across organisms