Experiment set6IT049 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB 10C

200 most important genes:

  gene name fitness t score description  
AO353_24130 -5.2 -5.1 hypothetical protein compare
AO353_00430 -3.8 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13100 -3.8 -3.7 GTPase RsgA compare
AO353_00515 -3.6 -4.9 hypothetical protein compare
AO353_07850 -3.2 -5.5 ATP-dependent RNA helicase compare
AO353_07355 -3.0 -9.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13925 -2.9 -3.9 XRE family transcriptional regulator compare
AO353_12500 -2.9 -2.7 shikimate kinase compare
AO353_05420 -2.8 -3.3 peptide chain release factor 3 compare
AO353_12115 -2.8 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00825 -2.8 -6.4 porin compare
AO353_14150 -2.7 -3.1 peptidylprolyl isomerase compare
AO353_08880 -2.7 -3.1 exopolyphosphatase compare
AO353_18540 -2.5 -4.3 pseudouridine synthase compare
AO353_07315 -2.5 -4.0 rRNA methyltransferase compare
AO353_02250 -2.4 -5.1 chorismate synthase compare
AO353_02070 -2.3 -8.8 prephenate dehydratase compare
AO353_00495 -2.3 -3.7 DNA topoisomerase I compare
AO353_21625 -2.3 -3.8 Fe/S biogenesis protein NfuA compare
AO353_03710 -2.2 -4.8 formyltetrahydrofolate deformylase compare
AO353_10670 -2.1 -9.1 shikimate dehydrogenase compare
AO353_05625 -2.1 -1.6 transcription elongation factor GreA compare
AO353_14975 -2.0 -4.9 hypothetical protein compare
AO353_04355 -2.0 -2.6 homoserine dehydrogenase compare
AO353_14740 -1.9 -5.5 GTP-binding protein compare
AO353_08165 -1.9 -4.4 pyrroline-5-carboxylate reductase compare
AO353_13200 -1.9 -11.8 exoribonuclease R compare
AO353_14495 -1.9 -11.7 acetolactate synthase 3 catalytic subunit compare
AO353_04500 -1.8 -3.2 DNA repair protein RecO compare
AO353_14420 -1.8 -6.1 molecular chaperone DnaK compare
AO353_27720 -1.8 -5.9 cupin compare
AO353_18305 -1.8 -5.5 RNA helicase compare
AO353_04520 -1.8 -5.8 elongation factor 4 compare
AO353_06850 -1.7 -5.6 MFS transporter compare
AO353_12045 -1.7 -5.6 iron transporter compare
AO353_12420 -1.7 -4.6 predicted FeS cluster maintenance protein (from data) compare
AO353_11730 -1.6 -10.0 glutamate--cysteine ligase compare
AO353_06050 -1.6 -7.8 exodeoxyribonuclease V subunit gamma compare
AO353_13140 -1.6 -6.9 tRNA dimethylallyltransferase compare
AO353_09000 -1.6 -5.3 argininosuccinate lyase compare
AO353_14400 -1.6 -5.3 Fis family transcriptional regulator compare
AO353_09890 -1.5 -5.9 phosphate ABC transporter ATP-binding protein compare
AO353_03615 -1.5 -4.2 cold-shock protein compare
AO353_00610 -1.5 -2.5 cytochrome C oxidase Cbb3 compare
AO353_12345 -1.5 -2.7 twin-arginine protein translocation system subunit TatC compare
AO353_20175 -1.5 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_09240 -1.5 -4.1 acetylglutamate kinase compare
AO353_14220 -1.4 -2.0 ribosomal large subunit pseudouridine synthase D compare
AO353_06040 -1.4 -4.2 exodeoxyribonuclease V subunit alpha compare
AO353_14940 -1.4 -4.3 malate:quinone oxidoreductase compare
AO353_04175 -1.4 -5.3 glycerol uptake facilitator GlpF compare
AO353_13220 -1.4 -5.9 hypothetical protein compare
AO353_13225 -1.3 -3.1 50S ribosomal protein L9 compare
AO353_05210 -1.3 -5.7 hypothetical protein compare
AO353_20170 -1.3 -5.3 trigger factor compare
AO353_02075 -1.3 -7.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_07155 -1.3 -6.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14500 -1.3 -5.7 acetolactate synthase 3 regulatory subunit compare
AO353_20565 -1.3 -2.1 tRNA-Ala compare
AO353_12930 -1.3 -3.7 GlcNAc-PI de-N-acetylase compare
AO353_00650 -1.2 -3.0 cytochrome biogenesis protein compare
AO353_11530 -1.2 -7.8 diguanylate cyclase compare
AO353_27695 -1.2 -6.8 isocitrate dehydrogenase compare
AO353_08265 -1.2 -5.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_11165 -1.2 -8.2 hypothetical protein compare
AO353_16940 -1.2 -4.9 deoxycytidine triphosphate deaminase compare
AO353_03795 -1.2 -4.2 fumarate hydratase compare
AO353_26090 -1.1 -1.7 hypothetical protein compare
AO353_14395 -1.1 -3.6 poly(A) polymerase compare
AO353_13070 -1.1 -6.0 phosphoserine phosphatase compare
AO353_12090 -1.1 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_09720 -1.1 -1.4 hypothetical protein compare
AO353_03590 -1.1 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_12130 -1.1 -4.8 preprotein translocase subunit SecB compare
AO353_07075 -1.1 -4.1 elongation factor Tu compare
AO353_06455 -1.1 -2.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_09900 -1.1 -7.3 phosphate ABC transporter permease compare
AO353_06045 -1.1 -5.3 exodeoxyribonuclease V subunit beta compare
AO353_02685 -1.1 -3.2 phosphoribosylglycinamide formyltransferase compare
AO353_04105 -1.1 -6.0 argininosuccinate synthase compare
AO353_01355 -1.0 -5.3 3-oxoacyl-ACP synthase compare
AO353_02975 -1.0 -2.2 aspartate kinase compare
AO353_06265 -1.0 -5.9 DEAD/DEAH box helicase compare
AO353_23495 -1.0 -2.3 SAM-dependent methyltransferase compare
AO353_03580 -1.0 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_04190 -1.0 -1.9 glycerol-3-phosphate dehydrogenase compare
AO353_15555 -1.0 -3.5 fumarylacetoacetase compare
AO353_04220 -1.0 -4.9 chemotaxis protein CheY compare
AO353_10945 -1.0 -2.8 cytochrome C compare
AO353_08685 -1.0 -5.9 N-acetylglutamate synthase compare
AO353_05125 -1.0 -4.1 BolA family transcriptional regulator compare
AO353_16805 -1.0 -4.6 recombinase RecA compare
AO353_08115 -1.0 -5.1 energy transducer TonB compare
AO353_20185 -1.0 -4.8 DNA-binding protein compare
AO353_19360 -0.9 -2.7 peroxiredoxin compare
AO353_17885 -0.9 -1.9 hypothetical protein compare
AO353_15250 -0.9 -2.8 cytochrome B compare
AO353_18425 -0.9 -3.7 hypothetical protein compare
AO353_13160 -0.9 -2.2 membrane protease HflC compare
AO353_23590 -0.9 -2.1 ArsR family transcriptional regulator compare
AO353_12665 -0.9 -2.1 glycosyl transferase compare
AO353_09745 -0.9 -0.9 hypothetical protein compare
AO353_15905 -0.9 -4.9 outer membrane protein assembly factor BamB compare
AO353_06480 -0.9 -2.8 50S rRNA methyltransferase compare
AO353_18745 -0.9 -2.5 flagellar biosynthesis protein flip compare
AO353_11775 -0.9 -4.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_02660 -0.9 -3.6 peptidase P60 compare
AO353_20865 -0.9 -1.7 cold-shock protein compare
AO353_06495 -0.9 -3.7 gamma-glutamyl phosphate reductase compare
AO353_09040 -0.8 -1.8 diaminopimelate epimerase compare
AO353_10710 -0.8 -3.7 tryptophan synthase subunit beta compare
AO353_00810 -0.8 -2.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_06710 -0.8 -1.1 riboflavin synthase subunit alpha compare
AO353_27650 -0.8 -3.2 cell division protein FtsK compare
AO353_08110 -0.8 -3.9 glutathione synthetase compare
AO353_01975 -0.8 -5.1 glycosyl transferase compare
AO353_24440 -0.8 -2.0 reactive intermediate/imine deaminase compare
AO353_14775 -0.8 -4.4 hypothetical protein compare
AO353_00185 -0.8 -1.9 phage tail protein compare
AO353_19145 -0.8 -3.1 protease HtpX compare
AO353_01705 -0.8 -3.2 alpha/beta hydrolase compare
AO353_14405 -0.8 -5.8 ATPase compare
AO353_26645 -0.8 -2.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_12105 -0.8 -3.9 peptidase S41 compare
AO353_17675 -0.8 -2.9 hypothetical protein compare
AO353_08345 -0.8 -4.5 dihydroxy-acid dehydratase compare
AO353_05240 -0.8 -1.9 rod shape-determining protein MreD compare
AO353_16040 -0.8 -2.1 hypothetical protein compare
AO353_12880 -0.8 -1.0 ADP-heptose--LPS heptosyltransferase compare
AO353_15170 -0.8 -2.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_16825 -0.7 -3.7 hypothetical protein compare
AO353_21750 -0.7 -2.1 peptidylprolyl isomerase compare
AO353_08975 -0.7 -4.1 heme biosynthesis protein HemY compare
AO353_14485 -0.7 -1.1 pseudouridine synthase compare
AO353_00885 -0.7 -2.3 3-methylitaconate isomerase compare
AO353_09895 -0.7 -4.1 phosphate ABC transporter permease compare
AO353_18655 -0.7 -2.6 flagellar assembly protein FliT compare
AO353_12940 -0.7 -4.3 glycosyl transferase compare
AO353_03670 -0.7 -2.8 ornithine acetyltransferase compare
AO353_10440 -0.7 -2.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_26070 -0.7 -1.3 hypothetical protein compare
AO353_02710 -0.7 -5.4 (p)ppGpp synthetase compare
AO353_08510 -0.7 -3.2 3-phosphoglycerate dehydrogenase compare
AO353_03585 -0.7 -1.9 ATP-dependent DNA helicase RuvA compare
AO353_17935 -0.7 -2.2 hypothetical protein compare
AO353_23520 -0.7 -2.8 muconolactone delta-isomerase compare
AO353_02640 -0.7 -0.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_24415 -0.7 -1.6 glutamine ABC transporter ATP-binding protein compare
AO353_08600 -0.7 -2.1 TetR family transcriptional regulator compare
AO353_03360 -0.7 -3.8 glucose-6-phosphate dehydrogenase compare
AO353_14115 -0.6 -3.4 gamma-glutamyl kinase compare
AO353_15445 -0.6 -2.1 disulfide bond formation protein B compare
AO353_18285 -0.6 -1.9 3-phosphoglycerate kinase compare
AO353_07445 -0.6 -1.2 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_01915 -0.6 -1.2 GlcG protein compare
AO353_20425 -0.6 -1.5 ArsC family transcriptional regulator compare
AO353_03000 -0.6 -2.2 topoisomerase II compare
AO353_09250 -0.6 -1.8 exodeoxyribonuclease III compare
AO353_23400 -0.6 -1.7 hypothetical protein compare
AO353_04065 -0.6 -2.3 electron transporter RnfB compare
AO353_09320 -0.6 -4.4 ATP-dependent DNA helicase RecG compare
AO353_07645 -0.6 -1.1 sarcosine oxidase subunit gamma compare
AO353_26115 -0.6 -1.3 hypothetical protein compare
AO353_17175 -0.6 -1.3 beta-ketoadipyl CoA thiolase compare
AO353_22475 -0.6 -2.1 alkaline phosphatase compare
AO353_28425 -0.6 -2.0 TetR family transcriptional regulator compare
AO353_18320 -0.6 -2.5 hypothetical protein compare
AO353_26195 -0.6 -1.6 hypothetical protein compare
AO353_29340 -0.6 -1.6 transporter compare
AO353_05150 -0.6 -2.3 ABC transporter ATP-binding protein compare
AO353_04930 -0.6 -1.5 flavodoxin compare
AO353_19295 -0.6 -1.5 hypothetical protein compare
AO353_13640 -0.6 -2.3 histidine kinase compare
AO353_22810 -0.6 -1.0 hypothetical protein compare
AO353_01970 -0.6 -4.2 hypothetical protein compare
AO353_21410 -0.6 -1.7 hypothetical protein compare
AO353_05230 -0.6 -3.7 ribonuclease G compare
AO353_14585 -0.6 -2.8 ribosomal-protein-alanine acetyltransferase compare
AO353_27090 -0.6 -1.4 hypothetical protein compare
AO353_00905 -0.6 -2.2 GntR family transcriptional regulator compare
AO353_02970 -0.6 -2.0 carbon storage regulator compare
AO353_02015 -0.6 -3.6 acetyltransferase compare
AO353_02940 -0.6 -1.7 DNA-binding protein compare
AO353_02720 -0.6 -2.9 cysteine synthase compare
AO353_19500 -0.6 -2.1 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_23935 -0.6 -2.6 hypothetical protein compare
AO353_20495 -0.6 -1.5 NUDIX hydrolase compare
AO353_29000 -0.6 -1.9 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_17100 -0.6 -1.7 hypothetical protein compare
AO353_15900 -0.6 -1.1 GTP-binding protein compare
AO353_13245 -0.6 -3.1 hypothetical protein compare
AO353_19060 -0.6 -2.1 CysB family transcriptional regulator compare
AO353_22855 -0.6 -1.3 hypothetical protein compare
AO353_07325 -0.6 -1.0 diadenosine tetraphosphatase compare
AO353_00750 -0.6 -1.9 GntR family transcriptional regulator compare
AO353_09315 -0.6 -3.3 LysR family transcriptional regulator compare
AO353_10055 -0.6 -4.4 DNA helicase II compare
AO353_13155 -0.6 -2.2 hypothetical protein compare
AO353_08980 -0.5 -1.9 heme biosynthesis operon protein HemX compare
AO353_02465 -0.5 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in temperature experiments