Experiment set6IT048 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_664 -4.9 -3.4 Acetoin catabolism protein X compare
Pf6N2E2_4710 -4.8 -3.3 hypothetical protein compare
Pf6N2E2_2313 -3.8 -2.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2674 -3.6 -1.6 FIG00953856: hypothetical protein compare
Pf6N2E2_5014 -3.6 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3373 -3.5 -2.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4541 -3.4 -1.5 hypothetical protein compare
Pf6N2E2_3134 -3.3 -1.5 hypothetical protein compare
Pf6N2E2_3264 -3.2 -2.9 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3303 -3.2 -3.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4369 -2.8 -1.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2127 -2.7 -4.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3661 -2.7 -1.9 hypothetical protein compare
Pf6N2E2_3782 -2.7 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2507 -2.7 -5.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2506 -2.6 -10.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3271 -2.5 -2.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1673 -2.5 -3.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3842 -2.5 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5242 -2.5 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1617 -2.4 -1.5 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3658 -2.4 -6.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2425 -2.4 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_482 -2.4 -2.4 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_2285 -2.4 -1.5 FIG00954079: hypothetical protein compare
Pf6N2E2_2218 -2.4 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2219 -2.3 -1.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5727 -2.3 -5.6 FIG00955360: hypothetical protein compare
Pf6N2E2_2156 -2.3 -2.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_5241 -2.3 -2.5 Aminopeptidase N compare
Pf6N2E2_5430 -2.2 -7.4 Transglycosylase, Slt family compare
Pf6N2E2_4362 -2.2 -3.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5068 -2.2 -8.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3349 -2.2 -2.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3786 -2.1 -3.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_5316 -2.1 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2794 -2.1 -1.4 putative membrane protein compare
Pf6N2E2_2320 -2.1 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3835 -2.1 -3.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5337 -2.0 -3.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_156 -2.0 -2.3 Carbon storage regulator compare
Pf6N2E2_2508 -2.0 -2.8 hypothetical protein compare
Pf6N2E2_3095 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_3198 -2.0 -1.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3847 -2.0 -3.2 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2510 -2.0 -4.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3659 -2.0 -3.7 Protein fixF compare
Pf6N2E2_2312 -1.9 -1.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2318 -1.9 -6.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3252 -1.9 -5.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5705 -1.9 -2.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3017 -1.9 -2.4 hypothetical protein compare
Pf6N2E2_288 -1.9 -2.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3612 -1.9 -2.2 HflK protein compare
Pf6N2E2_5527 -1.9 -2.1 Cold shock protein CspC compare
Pf6N2E2_4204 -1.8 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1682 -1.8 -3.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_579 -1.8 -1.4 FIG00962753: hypothetical protein compare
Pf6N2E2_4889 -1.8 -4.4 Putative transport protein compare
Pf6N2E2_3270 -1.8 -3.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4187 -1.8 -3.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2402 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_3260 -1.8 -3.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2310 -1.7 -7.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2311 -1.7 -5.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2181 -1.7 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5342 -1.7 -2.6 21 kDa hemolysin precursor compare
Pf6N2E2_3534 -1.7 -2.5 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2999 -1.7 -2.4 probable tail fiber assembly protein compare
Pf6N2E2_1499 -1.7 -2.7 ABC transporter amino acid-binding protein compare
Pf6N2E2_1824 -1.7 -1.9 hypothetical protein compare
Pf6N2E2_5338 -1.7 -5.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5178 -1.7 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2264 -1.7 -2.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3969 -1.7 -1.3 Membrane-fusion protein compare
Pf6N2E2_3839 -1.7 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3841 -1.7 -3.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_6140 -1.6 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_613 -1.6 -1.2 lipoprotein, putative compare
Pf6N2E2_3161 -1.6 -2.6 hypothetical protein compare
Pf6N2E2_750 -1.6 -2.0 Transcriptional regulator, DeoR family compare
Pf6N2E2_1747 -1.6 -2.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5704 -1.5 -3.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2022 -1.5 -4.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2069 -1.5 -2.2 FIG00953703: hypothetical protein compare
Pf6N2E2_2126 -1.5 -4.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2474 -1.5 -6.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3942 -1.5 -6.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2384 -1.5 -3.0 CmpX compare
Pf6N2E2_2261 -1.5 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_3944 -1.5 -2.2 Protein of unknown function DUF81 compare
Pf6N2E2_3941 -1.5 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_6063 -1.5 -5.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4422 -1.5 -1.5 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_3792 -1.5 -3.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2513 -1.5 -2.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4797 -1.5 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4918 -1.5 -2.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_1009 -1.4 -1.2 Inositol transport system permease protein compare
Pf6N2E2_5243 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_1463 -1.4 -2.0 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_4159 -1.4 -2.9 Cytochrome c4 compare
Pf6N2E2_4206 -1.4 -1.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_928 -1.4 -2.0 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_1774 -1.4 -1.1 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_70 -1.4 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5780 -1.4 -5.7 Periplasmic protease compare
Pf6N2E2_2010 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_6095 -1.4 -2.4 tRNA-Asn-GTT compare
Pf6N2E2_2586 -1.4 -1.6 Hpt domain protein compare
Pf6N2E2_3257 -1.4 -2.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5069 -1.4 -4.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1994 -1.4 -2.5 putative lipoprotein compare
Pf6N2E2_5840 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_2519 -1.4 -1.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_1294 -1.4 -1.5 Carbon starvation protein A compare
Pf6N2E2_1352 -1.4 -2.1 Cation transport ATPase compare
Pf6N2E2_2139 -1.4 -2.1 Paraquat-inducible protein A compare
Pf6N2E2_6057 -1.3 -1.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5219 -1.3 -5.2 FIG140336: TPR domain protein compare
Pf6N2E2_1972 -1.3 -1.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4077 -1.3 -1.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4453 -1.3 -7.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5339 -1.3 -3.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_178 -1.3 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_49 -1.3 -2.7 FIG00967200: hypothetical protein compare
Pf6N2E2_5320 -1.3 -4.0 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_384 -1.3 -2.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2503 -1.3 -1.5 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_6085 -1.3 -1.5 Aha1 domain superfamily compare
Pf6N2E2_1743 -1.3 -1.6 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2472 -1.3 -3.2 hypothetical protein compare
Pf6N2E2_2340 -1.3 -3.2 Transcriptional regulator, GntR family compare
Pf6N2E2_2317 -1.3 -2.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1173 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_5646 -1.3 -1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_4638 -1.3 -1.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3783 -1.3 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2675 -1.3 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2518 -1.3 -2.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1056 -1.3 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4680 -1.2 -2.6 HTH-type transcriptional regulator BetI compare
Pf6N2E2_2640 -1.2 -1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5723 -1.2 -6.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_3834 -1.2 -4.1 Lipoprotein NlpD compare
Pf6N2E2_4611 -1.2 -2.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_6060 -1.2 -2.7 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_3261 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_460 -1.2 -2.1 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_3384 -1.2 -2.9 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_1875 -1.2 -2.3 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_5006 -1.2 -4.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4614 -1.2 -2.0 twitching motility protein PilH compare
Pf6N2E2_5668 -1.2 -2.4 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_5508 -1.2 -1.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_1981 -1.2 -2.8 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3255 -1.2 -2.6 YrbA protein compare
Pf6N2E2_4532 -1.2 -3.5 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5250 -1.2 -2.9 Restriction endonuclease compare
Pf6N2E2_3569 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_1136 -1.2 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_1031 -1.2 -1.4 Alkanesulfonates transport system permease protein compare
Pf6N2E2_1762 -1.2 -2.2 putative lipase compare
Pf6N2E2_339 -1.2 -2.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1322 -1.1 -2.0 MoaE protein compare
Pf6N2E2_893 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_4352 -1.1 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2752 -1.1 -4.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1043 -1.1 -2.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2755 -1.1 -1.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2217 -1.1 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_6064 -1.1 -3.4 2-methylaconitate isomerase compare
Pf6N2E2_3039 -1.1 -3.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2527 -1.1 -2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5545 -1.1 -2.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2985 -1.1 -2.1 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4678 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_1011 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_2509 -1.1 -1.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_479 -1.1 -2.8 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_71 -1.1 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2180 -1.1 -2.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4779 -1.1 -2.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_4188 -1.1 -1.8 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_4013 -1.1 -5.9 5-aminovalerate transaminase (EC 2.6.1.48) (from data) compare
Pf6N2E2_2646 -1.1 -1.3 FIG00953416: hypothetical protein compare
Pf6N2E2_3595 -1.1 -2.0 Large protein containing transglutaminase-like domain compare
Pf6N2E2_3791 -1.1 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5703 -1.1 -2.1 outer membrane protein H1 compare
Pf6N2E2_5841 -1.1 -0.9 GlcG protein compare
Pf6N2E2_1074 -1.1 -2.0 FIG00953356: hypothetical protein compare
Pf6N2E2_1248 -1.1 -1.9 MutT/nudix family protein compare
Pf6N2E2_4762 -1.1 -2.1 Biotin synthesis protein BioH compare
Pf6N2E2_420 -1.1 -1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_1212 -1.1 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5806 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_2473 -1.1 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_5666 -1.1 -4.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2418 -1.1 -2.2 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4778 -1.1 -5.7 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments