Experiment set6IT046 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Gjerstad humics 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5027 -5.1 -11.8 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_760 -4.6 -10.3 Na+/H+ antiporter NhaB compare
Pf6N2E2_5319 -4.4 -9.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4451 -4.3 -5.9 FIG139438: lipoprotein B compare
Pf6N2E2_300 -4.2 -5.7 CrcB protein compare
Pf6N2E2_3611 -4.0 -2.7 HflC protein compare
Pf6N2E2_5794 -3.9 -2.8 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5321 -3.9 -9.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5609 -3.8 -7.2 DNA-binding response regulator ColR compare
Pf6N2E2_4071 -3.7 -5.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3948 -3.7 -9.7 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5320 -3.7 -9.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5318 -3.6 -20.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2258 -3.6 -10.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3658 -3.5 -7.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2507 -3.5 -6.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4418 -3.4 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4369 -3.3 -2.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5150 -3.3 -6.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_144 -3.3 -17.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5178 -3.2 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2274 -3.1 -6.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2261 -3.0 -5.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_5317 -3.0 -13.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5242 -3.0 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4599 -3.0 -4.0 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4077 -3.0 -3.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3661 -2.9 -3.4 hypothetical protein compare
Pf6N2E2_3941 -2.9 -3.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4611 -2.8 -4.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3607 -2.8 -9.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3258 -2.7 -4.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3659 -2.7 -5.9 Protein fixF compare
Pf6N2E2_3612 -2.7 -2.6 HflK protein compare
Pf6N2E2_5523 -2.7 -3.3 Small-conductance mechanosensitive channel compare
Pf6N2E2_3270 -2.6 -4.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_145 -2.6 -7.4 putative exported protein compare
Pf6N2E2_3260 -2.6 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2506 -2.6 -12.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5006 -2.5 -8.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_6064 -2.5 -6.0 2-methylaconitate isomerase compare
Pf6N2E2_1056 -2.4 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_70 -2.4 -4.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_288 -2.4 -2.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3257 -2.3 -3.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4057 -2.3 -1.5 lipoprotein, putative compare
Pf6N2E2_4187 -2.2 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_6140 -2.2 -1.5 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5727 -2.2 -6.8 FIG00955360: hypothetical protein compare
Pf6N2E2_3791 -2.2 -9.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5155 -2.2 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2487 -2.1 -1.4 FIG00956090: hypothetical protein compare
Pf6N2E2_2574 -2.1 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_3792 -2.1 -4.8 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3282 -2.1 -2.0 FIG005080: Possible exported protein compare
Pf6N2E2_5103 -2.1 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3505 -2.1 -1.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_282 -2.0 -1.7 GNAT family acetyltransferase YjcF compare
Pf6N2E2_3198 -2.0 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4773 -2.0 -1.4 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5527 -2.0 -2.2 Cold shock protein CspC compare
Pf6N2E2_2219 -2.0 -1.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3460 -2.0 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_1424 -2.0 -2.2 transcriptional regulator, TetR family compare
Pf6N2E2_445 -2.0 -5.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5610 -1.9 -6.1 two-component system sensor protein compare
Pf6N2E2_2217 -1.9 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5508 -1.9 -2.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_6063 -1.9 -6.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4352 -1.9 -2.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5841 -1.8 -1.7 GlcG protein compare
Pf6N2E2_2510 -1.8 -4.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4416 -1.8 -2.4 Tyrosine recombinase XerC compare
Pf6N2E2_3264 -1.8 -3.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4095 -1.8 -9.6 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4092 -1.7 -3.4 FIG00954395: hypothetical protein compare
Pf6N2E2_3835 -1.7 -3.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2425 -1.7 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2340 -1.7 -3.8 Transcriptional regulator, GntR family compare
Pf6N2E2_2253 -1.7 -2.5 hypothetical protein compare
Pf6N2E2_2474 -1.7 -8.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3271 -1.7 -2.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2586 -1.7 -2.2 Hpt domain protein compare
Pf6N2E2_5990 -1.7 -2.9 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5014 -1.7 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5986 -1.7 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2264 -1.7 -3.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2825 -1.6 -3.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5555 -1.6 -0.9 Cold shock protein CspA compare
Pf6N2E2_2413 -1.6 -2.4 FIG074102: hypothetical protein compare
Pf6N2E2_2472 -1.6 -4.0 hypothetical protein compare
Pf6N2E2_5111 -1.5 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2822 -1.5 -7.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5340 -1.5 -3.1 Stringent starvation protein A compare
Pf6N2E2_3074 -1.5 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_2218 -1.5 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_331 -1.4 -3.2 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_1116 -1.4 -1.6 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_5780 -1.4 -6.9 Periplasmic protease compare
Pf6N2E2_2508 -1.4 -3.1 hypothetical protein compare
Pf6N2E2_3908 -1.4 -5.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3283 -1.4 -5.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_6057 -1.4 -2.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5219 -1.4 -6.5 FIG140336: TPR domain protein compare
Pf6N2E2_5342 -1.4 -1.8 21 kDa hemolysin precursor compare
Pf6N2E2_5223 -1.3 -4.2 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_817 -1.3 -5.4 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_5001 -1.3 -2.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5331 -1.3 -4.7 ATPase, AFG1 family compare
Pf6N2E2_1656 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_1099 -1.3 -1.2 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_122 -1.3 -2.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_1966 -1.3 -2.1 SAM-dependent methyltransferases compare
Pf6N2E2_634 -1.3 -6.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_3477 -1.2 -0.9 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_1652 -1.2 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3617 -1.2 -3.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4075 -1.2 -4.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2509 -1.2 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3713 -1.2 -2.3 Acyl carrier protein compare
Pf6N2E2_2189 -1.2 -3.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3666 -1.2 -3.4 InaA protein compare
Pf6N2E2_2480 -1.2 -1.5 FIG00957636: hypothetical protein compare
Pf6N2E2_5406 -1.2 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_178 -1.2 -0.9 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1440 -1.2 -2.9 Putative tRNA-m1A22 methylase compare
Pf6N2E2_4072 -1.2 -3.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4372 -1.2 -3.9 FIG00460773: hypothetical protein compare
Pf6N2E2_3696 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_3151 -1.2 -2.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_6058 -1.2 -3.5 FIG139976: hypothetical protein compare
Pf6N2E2_1758 -1.2 -1.8 Transcriptional regulator, MarR family compare
Pf6N2E2_3770 -1.2 -1.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_5816 -1.2 -1.5 Smr domain protein compare
Pf6N2E2_5316 -1.1 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_831 -1.1 -1.5 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_156 -1.1 -1.5 Carbon storage regulator compare
Pf6N2E2_1095 -1.1 -2.2 Opine oxidase subunit C compare
Pf6N2E2_2471 -1.1 -6.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3199 -1.1 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_3039 -1.1 -4.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4272 -1.1 -2.6 putative membrane protein compare
Pf6N2E2_2473 -1.1 -1.2 Major outer membrane lipoprotein I compare
Pf6N2E2_5394 -1.1 -2.6 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_5793 -1.1 -4.4 Aspartyl aminopeptidase compare
Pf6N2E2_3942 -1.1 -4.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4084 -1.1 -4.6 Transcriptional regulator compare
Pf6N2E2_375 -1.1 -3.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3344 -1.1 -3.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_2459 -1.1 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_2675 -1.1 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4447 -1.1 -7.9 Cytochrome c family protein compare
Pf6N2E2_5452 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_2447 -1.1 -4.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3833 -1.1 -3.0 hypothetical protein compare
Pf6N2E2_2018 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_3328 -1.1 -1.3 transcriptional regulator compare
Pf6N2E2_180 -1.1 -2.6 Transcriptional regulator, MerR family compare
Pf6N2E2_5226 -1.1 -1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_4045 -1.0 -1.7 FIG00953248: hypothetical protein compare
Pf6N2E2_865 -1.0 -1.3 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_942 -1.0 -1.1 Mll6465 protein compare
Pf6N2E2_4148 -1.0 -4.4 Glutamate-aspartate carrier protein compare
Pf6N2E2_971 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_5843 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_4205 -1.0 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2753 -1.0 -1.9 HtrA protease/chaperone protein compare
Pf6N2E2_4453 -1.0 -7.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_285 -1.0 -2.9 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_5962 -1.0 -4.9 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5522 -1.0 -2.1 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_2080 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_5476 -1.0 -1.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_828 -1.0 -3.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1043 -1.0 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2970 -1.0 -2.0 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_4982 -1.0 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5183 -0.9 -5.9 Paraquat-inducible protein B compare
Pf6N2E2_3889 -0.9 -3.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5392 -0.9 -2.7 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3720 -0.9 -2.1 FIG027190: Putative transmembrane protein compare
Pf6N2E2_2213 -0.9 -3.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3243 -0.9 -6.9 FIG067310: hypothetical protein compare
Pf6N2E2_2514 -0.9 -2.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_431 -0.9 -3.1 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_2424 -0.9 -2.3 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_814 -0.9 -3.0 hypothetical protein compare
Pf6N2E2_3634 -0.9 -1.2 Transporter compare
Pf6N2E2_1821 -0.9 -1.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2278 -0.9 -6.9 Transcription-repair coupling factor compare
Pf6N2E2_423 -0.9 -1.4 Putative phosphatase YfbT compare
Pf6N2E2_3373 -0.9 -1.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5241 -0.9 -1.8 Aminopeptidase N compare
Pf6N2E2_4803 -0.9 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1545 -0.9 -2.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3027 -0.9 -1.0 Baseplate assembly protein V compare
Pf6N2E2_5944 -0.9 -3.0 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2422 -0.9 -4.8 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_2161 -0.9 -3.1 Conserved domain protein compare
Pf6N2E2_2746 -0.9 -3.1 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare


Specific Phenotypes

For 3 genes in this experiment

For stress Gjerstad humics in Pseudomonas fluorescens FW300-N2E2

For stress Gjerstad humics across organisms