Experiment set6IT044 for Caulobacter crescentus NA1000

Compare to:

PYE 0.5x 30C survival rep2 12 days

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00280 +5.1 42.9 tRNA pseudouridine synthase A compare
CCNA_02732 +4.6 16.5 hypothetical protein compare
CCNA_00485 +4.5 38.8 ribosomal large subunit pseudouridine synthase D compare
CCNA_01433 +3.9 23.7 integration host factor alpha-subunit compare
CCNA_00471 +3.9 29.3 GDP-L-fucose synthase compare
CCNA_02283 +3.7 19.0 HNH endonuclease family protein compare
CCNA_02910 +3.5 30.5 TonB-dependent receptor compare
CCNA_01923 +3.3 24.3 ATP-dependent RNA helicase compare
CCNA_01393 +3.3 30.3 soluble lytic murein transglycosylase compare
CCNA_02575 +3.2 12.4 hypothetical protein compare
CCNA_00161 +3.1 21.4 hypothetical protein compare
CCNA_00054 +3.1 25.5 tRNA 2-methylthioadenosine synthase compare
CCNA_01851 +3.0 26.6 quinol cytochrome oxidase polypeptide II compare
CCNA_03453 +3.0 22.0 AcrR-family transcriptional regulator compare
CCNA_03998 +2.8 22.6 GT1/WbuB-like N-acetyl-L-fucosamine transferase compare
CCNA_03105 +2.7 13.5 DnaJ domain protein compare
CCNA_03701 +2.7 6.1 integration host factor beta-subunit compare
CCNA_00162 +2.7 16.7 hypothetical protein compare
CCNA_01784 +2.6 5.9 hypothetical protein compare
CCNA_01430 +2.6 18.0 hypothetical protein compare
CCNA_00164 +2.5 18.6 O-antigen polymerase compare
CCNA_02098 +2.5 17.1 molybdopterin-guanine dinucleotide biosynthesis protein A compare
CCNA_02028 +2.5 4.3 NTF2 superfamily protein compare
CCNA_02030 +2.4 13.9 hypothetical protein compare
CCNA_03872 +2.4 13.9 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_03244 +2.4 17.4 GntR-family transcriptional regulator compare
CCNA_00435 +2.4 20.5 L-proline transporter (from data) compare
CCNA_00769 +2.3 13.0 TetR family transcriptional regulator compare
CCNA_01914 +2.3 17.7 16S rRNA m(2)G 1207 methyltransferase RsmC compare
CCNA_01849 +2.3 16.6 quinol cytochrome oxidase polypeptide III compare
CCNA_02066 +2.3 12.2 phytoene/squalene synthase family protein compare
CCNA_01445 +2.3 12.4 hypothetical protein compare
CCNA_02287 +2.3 18.2 TetR-family transcriptional regulator compare
CCNA_03637 +2.3 18.5 triphosphate tunnel metalloenzyme family protein compare
CCNA_01850 +2.2 16.1 quinol cytochrome oxidase polypeptide I compare
CCNA_00163 +2.2 18.6 exopolysaccharide transport family protein compare
CCNA_02199 +2.2 19.5 methyltransferase compare
CCNA_01954 +2.2 7.1 ribonuclease E compare
CCNA_00168 +2.2 18.7 polysaccharide export protein compare
CCNA_03062 +2.2 13.4 cell wall hydrolase family protein compare
CCNA_03813 +2.2 13.6 intermediate filament-like cell shape determinant creS compare
CCNA_03353 +2.1 15.0 metallophosphatase domain protein compare
CCNA_03612 +2.1 19.5 HTH XRE-family transcriptional regulator compare
CCNA_00555 +2.1 13.2 nitrogen regulatory protein P-II compare
CCNA_02339 +2.1 16.2 methyltransferase compare
CCNA_02026 +2.1 10.1 hypothetical protein compare
CCNA_01071 +2.1 15.3 alpha-ketoglutarate permease compare
CCNA_02467 +2.0 15.4 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_00472 +2.0 13.0 GDP-mannose 4,6 dehydratase compare
CCNA_00056 +1.9 14.2 ribosomal-protein-S18-alanine acetyltransferase compare
CCNA_03604 +1.9 10.1 hypothetical protein compare
CCNA_03107 +1.9 12.6 cytidine deaminase compare
CCNA_00032 +1.9 6.4 antitoxin protein VapB compare
CCNA_02000 +1.9 1.2 SSU ribosomal protein S2P compare
CCNA_03129 +1.9 14.2 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00998 +1.9 12.5 ROS/MUCR transcriptional regulator compare
CCNA_00233 +1.9 14.4 UDP-N-acetylglucosamine 4,6-dehydratase compare
CCNA_03229 +1.9 15.2 FAD dependent oxidoreductase compare
CCNA_00051 +1.9 12.5 magnesium and cobalt efflux protein CorC compare
CCNA_00167 +1.9 13.8 metallophosphatase family protein compare
CCNA_03936 +1.8 6.1 hypothetical protein compare
CCNA_02324 +1.8 11.2 heat shock protein 33 hsp33 compare
CCNA_02961 +1.8 13.9 NeuB-family N-acetylneuraminate synthase compare
CCNA_02151 +1.8 8.5 exodeoxyribonuclease VII small subunit compare
CCNA_02330 +1.7 9.3 hypothetical protein compare
CCNA_00237 +1.7 12.9 two-component response regulator chvI compare
CCNA_01845 +1.7 8.6 two-component response regulator protein compare
CCNA_00796 +1.7 7.9 oxygen sensory histidine kinase FixL compare
CCNA_03961 +1.7 6.1 hypothetical protein compare
CCNA_00107 +1.7 6.3 Trm112p-like protein compare
CCNA_03871 +1.7 6.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_01059 +1.6 14.0 S-layer protein rsaA compare
CCNA_00872 +1.6 5.1 glutaredoxin compare
CCNA_02448 +1.6 13.2 hypothetical protein compare
CCNA_03163 +1.6 11.8 peptidyl-prolyl cis-trans isomerase compare
CCNA_01181 +1.6 12.3 hypothetical protein compare
CCNA_03776 +1.6 12.2 2'-5' RNA ligase compare
CCNA_02221 +1.6 13.9 methionine synthase I metH compare
CCNA_01813 +1.6 9.2 tRNA-dihydrouridine synthase compare
CCNA_00053 +1.6 12.2 phosphate starvation-inducible protein PhoH compare
CCNA_01676 +1.6 1.0 hypothetical protein compare
CCNA_00852 +1.6 0.8 TetR family transcriptional regulator compare
CCNA_03235 +1.6 12.2 spermidine/putrescine transport ATP-binding protein potA compare
CCNA_02025 +1.6 5.3 hypothetical protein compare
CCNA_00234 +1.5 13.3 WecE-family cell wall biogenesis enzyme compare
CCNA_02567 +1.5 11.9 sensory transduction histidine kinase pleC compare
CCNA_02619 +1.5 12.2 stomatin/prohibitin-related protein compare
CCNA_03824 +1.5 11.1 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_00795 +1.5 3.6 two-component response regulator FixJ compare
CCNA_02534 +1.5 4.4 hypothetical protein compare
CCNA_01847 +1.5 10.2 cytochrome c oxidase assembly protein Surf1 compare
CCNA_03239 +1.5 10.1 spermidine/putrescine-binding protein compare
CCNA_03808 +1.5 9.2 organic solvent resistance transport system Ttg2C protein compare
CCNA_00338 +1.4 12.7 TonB-dependent receptor compare
CCNA_02728 +1.4 8.4 hypothetical protein compare
CCNA_01814 +1.4 6.3 nitrogen regulation protein ntrB compare
CCNA_03955 +1.4 2.4 hypothetical protein compare
CCNA_01155 +1.4 12.7 TonB-dependent outer membrane receptor compare
CCNA_02173 +1.4 10.1 ABC transporter ATP-binding protein compare
CCNA_01655 +1.4 8.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00036 +1.4 1.9 ribosome-binding factor A compare
CCNA_03260 +1.4 6.9 queuosine biosynthesis protein QueD compare
CCNA_01898 +1.4 7.6 Mg-dependent Dnase TatD compare
CCNA_00369 +1.4 12.2 magnesium and cobalt efflux protein corC-like protein compare
CCNA_01681 +1.4 7.5 RimI-like acetyltransferase compare
CCNA_01848 +1.3 10.3 quinol cytochrome oxidase polypeptide IV compare
CCNA_00447 +1.3 9.3 chemotaxis protein cheD compare
CCNA_02021 +1.3 6.2 hypothetical protein compare
CCNA_02741 +1.3 8.3 hypothetical protein compare
CCNA_00470 +1.3 10.3 O-antigen polymerase compare
CCNA_03236 +1.3 7.5 spermidine/putrescine transport system permease protein potC compare
CCNA_01074 +1.3 5.4 entericidin B-like protein compare
CCNA_03626 +1.3 9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
CCNA_03431 +1.3 11.7 membrane-bound lytic murein transglycosylase B compare
CCNA_00446 +1.3 7.8 chemotaxis receiver domain protein cheYII compare
CCNA_01385 +1.3 8.9 rRNA methylase compare
CCNA_01757 +1.3 0.8 dimethyladenosine transferase compare
CCNA_03951 +1.3 8.6 hypothetical protein compare
CCNA_02879 +1.3 1.5 genetic exchange related protein compare
CCNA_00441 +1.3 8.4 chemotaxis receiver domain protein cheYI compare
CCNA_02125 +1.3 11.1 polar development protein podJ compare
CCNA_02124 +1.3 7.0 hypothetical protein compare
CCNA_03964 +1.3 3.5 hypothetical protein compare
CCNA_01412 +1.2 9.4 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_02845 +1.2 7.5 two-component response regulator compare
CCNA_03473 +1.2 4.2 death on curing toxin protein doc compare
CCNA_00675 +1.2 7.5 VapC-like PIN domain ribonuclease compare
CCNA_01644 +1.2 7.1 chemotaxis motB protein compare
CCNA_02842 +1.2 8.3 two-component sensor histidine kinase compare
CCNA_02257 +1.2 6.1 fliN family protein compare
CCNA_02073 +1.2 7.4 cupin domain transcriptional regulator compare
CCNA_01173 +1.2 5.9 chorismate mutase compare
CCNA_00787 +1.2 8.6 chemotaxis motA protein compare
CCNA_01918 +1.2 7.6 cyclic di-GMP effector protein PopA compare
CCNA_00931 +1.2 10.3 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_02976 +1.2 6.3 MCP-signal associated domain protein compare
CCNA_03552 +1.2 9.4 polysaccharide deacetylase compare
CCNA_01530 +1.2 9.1 flagellin FljJ compare
CCNA_02646 +1.2 2.3 cell division protein MraZ compare
CCNA_02244 +1.2 9.0 aminotransferase class I family protein compare
CCNA_02379 +1.2 7.5 hypothetical protein compare
CCNA_03384 +1.2 0.9 LSU ribosomal protein L31P compare
CCNA_03627 +1.2 8.2 ATP phosphoribosyltransferase regulatory subunit compare
CCNA_00442 +1.2 9.9 chemotaxis histidine kinase protein cheAI compare
CCNA_03089 +1.2 7.8 hypothetical protein compare
CCNA_01505 +1.2 4.9 hypothetical protein compare
CCNA_02103 +1.2 8.8 hypothetical protein compare
CCNA_00768 +1.2 4.7 hypothetical protein compare
CCNA_01526 +1.1 8.8 flagellar biosynthesis regulatory protein flaF compare
CCNA_01931 +1.1 9.7 TetR-family transcriptional regulator compare
CCNA_01324 +1.1 4.2 LSU ribosomal protein L30P compare
CCNA_02174 +1.1 8.8 multidrug resistance efflux pump compare
CCNA_01425 +1.1 9.2 H+ translocating pyrophosphatase compare
CCNA_03959 +1.1 2.4 hypothetical protein compare
CCNA_01846 +1.1 6.6 two-component sensor histidine kinase compare
CCNA_02109 +1.1 1.6 thiamine biosynthesis protein thiC compare
CCNA_00620 +1.1 9.7 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase compare
CCNA_01186 +1.1 6.7 hypothetical protein compare
CCNA_00440 +1.1 5.1 STAS domain protein compare
CCNA_00448 +1.1 6.8 cheU protein compare
CCNA_R0037 +1.1 5.1 tRNA-Glu compare
CCNA_03123 +1.1 8.8 ArsR-family transcriptional regulator compare
CCNA_01913 +1.1 9.0 MarR-family transcriptional regulator compare
CCNA_00895 +1.1 7.1 hypothetical protein compare
CCNA_02063 +1.1 7.3 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02980 +1.1 8.9 tryptophan 2,3-dioxygenase compare
CCNA_03238 +1.1 7.0 ABC-type spermidine/putrescine transport system, permease component II compare
CCNA_00444 +1.1 8.2 chemotaxis protein methyltransferase compare
CCNA_03858 +1.1 6.4 protein translocase subunit secB compare
CCNA_03806 +1.1 8.4 outer membrane lipoprotein compare
CCNA_03963 +1.1 2.9 hypothetical protein compare
CCNA_00375 +1.1 7.7 hypothetical protein compare
CCNA_03041 +1.1 7.7 pilus assembly protein CpaB compare
CCNA_02363 +1.1 7.6 hypothetical protein compare
CCNA_01840 +1.1 9.0 MerR-family transcriptional regulator compare
CCNA_02172 +1.1 7.9 ABC-type transporter, permease component compare
CCNA_03044 +1.1 7.5 CpaC-related secretion pathway protein compare
CCNA_02966 +1.1 2.7 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase compare
CCNA_03807 +1.1 6.9 organic solvent resistance transport system Ttg2D protein compare
CCNA_02298 +1.1 6.3 MJ0042 family finger-like domain protein compare
CCNA_00210 +1.1 9.9 TonB-dependent receptor compare
CCNA_R0054 +1.1 2.9 tRNA-Gly compare
CCNA_00439 +1.1 8.6 methyl-accepting chemotaxis protein compare
CCNA_02297 +1.1 6.6 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_00438 +1.1 5.1 hypothetical protein compare
CCNA_03403 +1.1 4.4 small coiled-coil domain protein compare
CCNA_02111 +1.1 5.7 pilF-related tetratricopeptide repeat protein compare
CCNA_02949 +1.1 6.5 S-adenosylmethionine-dependent methyltransferase related protein compare
CCNA_01528 +1.0 8.1 flagellin fljK compare
CCNA_03497 +1.0 4.3 hypothetical protein compare
CCNA_00929 +1.0 8.7 Riboflavin-specific deaminase family protein compare
CCNA_02187 +1.0 6.2 adapter for ClpXP proteolysis of tmRNA-tagged proteins SspB compare
CCNA_00347 +1.0 4.3 hypothetical protein compare
CCNA_R0075 +1.0 1.9 tRNA-Met compare
CCNA_02436 +1.0 4.6 hypothetical protein compare
CCNA_00619 +1.0 8.3 succinylarginine dihydrolase compare
CCNA_00031 +1.0 6.8 toxin protein VapC compare
CCNA_00124 +1.0 6.9 hypothetical protein compare
CCNA_02338 +1.0 7.7 hypothetical protein compare
CCNA_03799 +1.0 5.2 short chain dehydrogenase compare


Specific Phenotypes

For 12 genes in this experiment