Experiment set6IT043 for Phaeobacter inhibens DSM 17395
marine broth with Phosphomycin disodium salt 2 mg/ml
Group: stressMedia: marine_broth_2216 + Phosphomycin disodium salt (2 mg/ml)
Culturing: Phaeo_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on marchapr14
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 897 A3,A4
Specific Phenotypes
For 17 genes in this experiment
For stress Phosphomycin disodium salt in Phaeobacter inhibens DSM 17395
For stress Phosphomycin disodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| methylphosphonate degradation I | 5 | 2 | 2 |
| glyphosate degradation III | 7 | 4 | 2 |
| guanosine ribonucleotides de novo biosynthesis | 4 | 4 | 1 |
| (aminomethyl)phosphonate degradation | 8 | 4 | 2 |
| dZTP biosynthesis | 5 | 3 | 1 |
| methylphosphonate degradation II | 5 | 1 | 1 |
| superpathway of guanosine nucleotides de novo biosynthesis I | 6 | 6 | 1 |
| superpathway of guanosine nucleotides de novo biosynthesis II | 8 | 7 | 1 |
| photorespiration III | 9 | 7 | 1 |
| photorespiration I | 9 | 7 | 1 |
| photorespiration II | 10 | 7 | 1 |
| peptidoglycan recycling II | 10 | 2 | 1 |
| superpathway of purine nucleotide salvage | 14 | 13 | 1 |
| peptidoglycan recycling I | 14 | 8 | 1 |
| superpathway of purine nucleotides de novo biosynthesis I | 21 | 21 | 1 |
| superpathway of purine nucleotides de novo biosynthesis II | 26 | 23 | 1 |
| superpathway of histidine, purine, and pyrimidine biosynthesis | 46 | 42 | 1 |