Experiment set6IT039 for Caulobacter crescentus NA1000

Compare to:

PYE_noCalcium 25C survival rep3 12 days

Group: survival
Media: PYE_noCalcium
Culturing: Caulo_ML2, tube, Aerobic, at 25 (C), shaken=200 rpm
By: Sneha on 8-Aug-18
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate

Specific Phenotypes

For 26 genes in this experiment

SEED Subsystems

Subsystem #Specific
Arginine and Ornithine Degradation 2
Arginine Biosynthesis extended 1
Biogenesis of cytochrome c oxidases 1
D-ribose utilization 1
Entner-Doudoroff Pathway 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
LOS core oligosaccharide biosynthesis 1
Methylglyoxal Metabolism 1
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-asparagine degradation I 1 1 1
putrescine degradation V 2 2 1
ethylene glycol degradation 2 1 1
putrescine degradation I 2 1 1
L-arginine degradation II (AST pathway) 5 3 2
ferulate degradation 3 3 1
ethanol degradation IV 3 3 1
L-asparagine degradation III (mammalian) 3 3 1
ethanol degradation II 3 3 1
ethanol degradation III 3 2 1
hypotaurine degradation 3 2 1
putrescine degradation IV 3 2 1
histamine degradation 3 1 1
phytol degradation 4 3 1
superpathway of L-aspartate and L-asparagine biosynthesis 4 2 1
putrescine degradation III 4 2 1
L-tryptophan degradation X (mammalian, via tryptamine) 4 2 1
fatty acid α-oxidation I (plants) 4 2 1
allantoin degradation to ureidoglycolate II (ammonia producing) 4 1 1
D-arabinose degradation II 4 1 1
L-ornithine biosynthesis I 5 5 1
mitochondrial NADPH production (yeast) 5 3 1
sphingosine and sphingosine-1-phosphate metabolism 10 4 2
dopamine degradation 5 2 1
octane oxidation 5 2 1
N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation 5 2 1
allantoin degradation to glyoxylate III 5 1 1
allantoin degradation to glyoxylate II 5 1 1
3-methyl-branched fatty acid α-oxidation 6 3 1
cyanophycin metabolism 6 2 1
alkane oxidation 6 1 1
noradrenaline and adrenaline degradation 13 8 2
serotonin degradation 7 4 1
superpathway of glycol metabolism and degradation 7 3 1
ceramide degradation by α-oxidation 7 2 1
limonene degradation IV (anaerobic) 7 1 1
superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) 8 6 1
superpathway of ornithine degradation 8 5 1
aromatic biogenic amine degradation (bacteria) 8 3 1
ceramide and sphingolipid recycling and degradation (yeast) 16 4 2
superpathway of allantoin degradation in plants 8 1 1
L-arginine biosynthesis I (via L-ornithine) 9 9 1
L-lysine biosynthesis I 9 9 1
L-arginine biosynthesis III (via N-acetyl-L-citrulline) 9 8 1
Entner-Doudoroff pathway II (non-phosphorylative) 9 4 1
allantoin degradation IV (anaerobic) 9 3 1
L-arginine biosynthesis II (acetyl cycle) 10 10 1
superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation 11 5 1
superpathway of L-arginine and L-ornithine degradation 13 7 1
superpathway of arginine and polyamine biosynthesis 17 12 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 16 1
suberin monomers biosynthesis 20 3 1
aspartate superpathway 25 23 1
superpathway of pentose and pentitol degradation 42 12 1