Experiment set6IT037 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

3-Hydroxypropionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01632 +2.4 20.4 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01633 +2.3 9.7 hypothetical protein compare
H281DRAFT_02007 +1.6 14.6 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_06056 +1.4 10.6 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02008 +1.4 9.2 phosphocarrier protein compare
H281DRAFT_00240 +1.2 10.3 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_04369 +1.2 4.5 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_04467 +1.1 7.0 UDP-glucose pyrophosphorylase compare
H281DRAFT_04359 +1.1 1.4 Glutaredoxin and related proteins compare
H281DRAFT_03835 +1.1 3.8 NitT/TauT family transport system permease protein compare
H281DRAFT_00254 +1.0 8.0 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_01927 +1.0 8.5 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_03460 +1.0 2.0 Protein of unknown function (DUF2950) compare
H281DRAFT_02170 +1.0 2.1 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_03820 +0.9 1.9 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_03046 +0.9 6.2 6-phosphogluconate dehydrogenase (decarboxylating) compare
H281DRAFT_05499 +0.9 1.8 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03396 +0.9 2.2 AraC-type DNA-binding protein compare
H281DRAFT_00236 +0.9 6.4 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_05434 +0.9 3.1 Predicted amidohydrolase compare
H281DRAFT_01883 +0.9 1.4 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_01519 +0.9 3.3 fructuronate reductase compare
H281DRAFT_04368 +0.9 5.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03414 +0.8 1.9 outer membrane surface antigen compare
H281DRAFT_00405 +0.8 1.8 Predicted small secreted protein compare
H281DRAFT_06388 +0.8 2.6 Sugar phosphate permease compare
H281DRAFT_05888 +0.8 2.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_02566 +0.8 1.8 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_06438 +0.8 1.6 hypothetical protein compare
H281DRAFT_04279 +0.8 4.0 transcriptional regulator, RpiR family compare
H281DRAFT_05389 +0.8 1.5 protein of unknown function (DUF3331) compare
H281DRAFT_03192 +0.8 1.2 D-methionine transport system substrate-binding protein compare
H281DRAFT_01287 +0.7 1.4 mxaK protein compare
H281DRAFT_02931 +0.7 4.2 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_04984 +0.7 2.8 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_06297 +0.7 1.0 L-arabinose-binding protein compare
H281DRAFT_03348 +0.7 1.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00504 +0.7 3.9 hypothetical protein compare
H281DRAFT_02505 +0.7 3.0 hypothetical protein compare
H281DRAFT_01442 +0.7 3.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_02985 +0.7 1.9 copper chaperone compare
H281DRAFT_06445 +0.7 1.4 Molybdopterin synthase catalytic subunit compare
H281DRAFT_02982 +0.7 1.8 2-methylaconitate cis-trans isomerase compare
H281DRAFT_03153 +0.7 1.8 two component transcriptional regulator, LuxR family compare
H281DRAFT_06190 +0.7 1.2 DNA-binding protein H-NS compare
H281DRAFT_04226 +0.7 1.4 hypothetical protein compare
H281DRAFT_06120 +0.7 1.5 hypothetical protein compare
H281DRAFT_03315 +0.7 1.7 HSP20 family protein compare
H281DRAFT_01061 +0.7 2.1 hypothetical protein compare
H281DRAFT_02287 +0.7 1.4 PKHD-type hydroxylase compare
H281DRAFT_02058 +0.7 1.1 cholesterol transport system auxiliary component compare
H281DRAFT_00875 +0.7 3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00050 +0.7 1.1 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_04878 +0.7 2.0 transcriptional regulator, ArsR family compare
H281DRAFT_03418 +0.7 2.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_06177 +0.7 4.4 hypothetical protein compare
H281DRAFT_00939 +0.7 3.5 hypothetical protein compare
H281DRAFT_01246 +0.7 1.2 hypothetical protein compare
H281DRAFT_03069 +0.7 1.4 Uncharacterized conserved protein compare
H281DRAFT_01021 +0.7 2.1 Nitroreductase compare
H281DRAFT_05480 +0.7 1.4 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_01321 +0.7 1.2 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_03296 +0.6 1.5 hypothetical protein compare
H281DRAFT_03890 +0.6 0.8 Broad specificity phosphatase PhoE compare
H281DRAFT_05952 +0.6 2.4 transcriptional regulator, LysR family compare
H281DRAFT_00697 +0.6 3.4 FAD/FMN-containing dehydrogenase compare
H281DRAFT_00704 +0.6 2.9 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_03273 +0.6 2.6 Uncharacterized membrane protein YqjE compare
H281DRAFT_06035 +0.6 2.3 esterase, PHB depolymerase family compare
H281DRAFT_01033 +0.6 1.4 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01599 +0.6 1.6 GTP cyclohydrolase I compare
H281DRAFT_05021 +0.6 1.0 Response regulator compare
H281DRAFT_03839 +0.6 2.2 hypothetical protein compare
H281DRAFT_00235 +0.6 1.3 hypothetical protein compare
H281DRAFT_01318 +0.6 0.9 hypothetical protein compare
H281DRAFT_05744 +0.6 1.1 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_01538 +0.6 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03837 +0.6 1.2 hypothetical protein compare
H281DRAFT_06081 +0.6 1.7 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_00074 +0.6 1.9 UDP-galactose 4-epimerase compare
H281DRAFT_02571 +0.6 1.3 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_06355 +0.6 2.0 4-oxalomesaconate hydratase compare
H281DRAFT_01222 +0.6 1.2 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_05387 +0.6 1.7 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_00488 +0.6 2.2 exonuclease RecJ compare
H281DRAFT_05362 +0.6 5.1 Tetratricopeptide repeat-containing protein compare
H281DRAFT_04802 +0.6 2.3 negative transcriptional regulator, PaiB family compare
H281DRAFT_03454 +0.6 1.2 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_06165 +0.6 1.2 hypothetical protein compare
H281DRAFT_03110 +0.6 2.2 concentrative nucleoside transporter, CNT family compare
H281DRAFT_04952 +0.6 2.7 putative solute:sodium symporter small subunit compare
H281DRAFT_01885 +0.6 1.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01335 +0.6 2.2 Signal transduction histidine kinase compare
H281DRAFT_04530 +0.6 1.3 K+-transporting ATPase ATPase B chain compare
H281DRAFT_00119 +0.6 2.8 uroporphyrinogen-III C-methyltransferase compare
H281DRAFT_05678 +0.6 1.5 hypothetical protein compare
H281DRAFT_06197 +0.6 1.3 hypothetical protein compare
H281DRAFT_02365 +0.6 1.8 2,4-dienoyl-CoA reductase compare
H281DRAFT_03703 +0.6 1.7 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03734 +0.6 1.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04346 +0.6 1.4 uncharacterized protein compare
H281DRAFT_01351 +0.6 1.9 hypothetical protein compare
H281DRAFT_05869 +0.6 1.5 2-iminobutanoate/2-iminopropanoate deaminase compare
H281DRAFT_00658 +0.6 1.3 transcriptional regulator, IclR family compare
H281DRAFT_02981 +0.6 4.2 aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) compare
H281DRAFT_03335 +0.6 1.7 transcriptional regulator, LysR family compare
H281DRAFT_02704 +0.6 3.0 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_06289 +0.6 2.9 hypothetical protein compare
H281DRAFT_01803 +0.6 2.7 transcriptional regulator, HxlR family compare
H281DRAFT_02623 +0.6 2.4 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A compare
H281DRAFT_00226 +0.5 2.0 Heavy-metal resistance compare
H281DRAFT_01372 +0.5 1.5 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_03094 +0.5 1.0 transcriptional regulator, MarR family compare
H281DRAFT_06276 +0.5 2.7 hypothetical protein compare
H281DRAFT_00382 +0.5 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_00913 +0.5 3.6 peptide-methionine (R)-S-oxide reductase compare
H281DRAFT_04893 +0.5 1.6 transcriptional regulator, LysR family compare
H281DRAFT_06285 +0.5 1.7 3-dehydroquinate dehydratase compare
H281DRAFT_03996 +0.5 1.7 chorismate mutase (EC 5.4.99.5) compare
H281DRAFT_02060 +0.5 3.1 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_00366 +0.5 1.4 phospholipase C compare
H281DRAFT_00716 +0.5 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00677 +0.5 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04249 +0.5 3.0 tRNA-U20-dihydrouridine synthase compare
H281DRAFT_04201 +0.5 1.0 O-antigen ligase compare
H281DRAFT_05910 +0.5 0.9 hypothetical protein compare
H281DRAFT_01108 +0.5 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06576 +0.5 1.7 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_00966 +0.5 2.3 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_04676 +0.5 1.3 hypothetical protein compare
H281DRAFT_01002 +0.5 1.1 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05681 +0.5 2.3 transcriptional regulator, TetR family compare
H281DRAFT_06020 +0.5 2.0 carboxymethylenebutenolidase compare
H281DRAFT_06547 +0.5 1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04544 +0.5 0.9 diacylglycerol kinase (ATP) compare
H281DRAFT_00469 +0.5 1.4 phasin family protein compare
H281DRAFT_02246 +0.5 4.2 phosphoenolpyruvate carboxykinase (GTP) compare
H281DRAFT_06375 +0.5 1.5 hypothetical protein compare
H281DRAFT_03147 +0.5 1.2 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_04734 +0.5 2.9 Uncharacterized membrane protein YqjE compare
H281DRAFT_05905 +0.5 1.4 hypothetical protein compare
H281DRAFT_00967 +0.5 3.3 assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4) compare
H281DRAFT_02968 +0.5 1.3 amidase compare
H281DRAFT_03486 +0.5 2.4 osmoprotectant transport system permease protein compare
H281DRAFT_04477 +0.5 3.6 transcriptional regulator, LysR family compare
H281DRAFT_03356 +0.5 1.9 glycerate dehydrogenase compare
H281DRAFT_03796 +0.5 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_00687 +0.5 1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_00472 +0.5 1.7 L-lactate dehydrogenase complex protein LldE compare
H281DRAFT_05438 +0.5 1.0 transcriptional regulator, IclR family compare
H281DRAFT_05610 +0.5 1.6 hypothetical protein compare
H281DRAFT_03944 +0.5 2.8 2-polyprenyl-6-methoxyphenol hydroxylase compare
H281DRAFT_05502 +0.5 1.7 transketolase subunit B compare
H281DRAFT_03790 +0.5 0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_02375 +0.5 2.7 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_02636 +0.5 1.0 hypothetical protein compare
H281DRAFT_04480 +0.5 2.3 FAD/FMN-containing dehydrogenase compare
H281DRAFT_00298 +0.5 2.0 hypothetical protein compare
H281DRAFT_01139 +0.5 1.4 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit compare
H281DRAFT_06134 +0.5 1.7 hypothetical protein compare
H281DRAFT_03864 +0.5 2.4 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_03127 +0.5 1.4 oligopeptide transport system permease protein compare
H281DRAFT_02102 +0.5 2.0 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_00940 +0.5 2.2 psiF repeat-containing protein compare
H281DRAFT_02855 +0.5 0.9 carbonic anhydrase compare
H281DRAFT_01554 +0.5 0.8 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03475 +0.5 1.9 hypothetical protein compare
H281DRAFT_00918 +0.5 1.6 Conserved secreted protein compare
H281DRAFT_00353 +0.5 1.8 G/U mismatch-specific uracil-DNA glycosylase compare
H281DRAFT_03572 +0.5 0.8 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_04452 +0.5 1.7 amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-) compare
H281DRAFT_05365 +0.5 2.8 type VI secretion system secreted protein Hcp compare
H281DRAFT_04691 +0.5 3.6 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_01865 +0.5 1.3 hypothetical protein compare
H281DRAFT_01242 +0.5 0.5 CDP-diacylglycerol pyrophosphatase compare
H281DRAFT_03742 +0.5 2.5 Sugar phosphate permease compare
H281DRAFT_02581 +0.5 1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02626 +0.5 1.3 hypothetical protein compare
H281DRAFT_02673 +0.5 2.5 Carbon monoxide dehydrogenase subunit G compare
H281DRAFT_02141 +0.5 1.6 hypothetical protein compare
H281DRAFT_01028 +0.5 0.8 peptide/nickel transport system permease protein compare
H281DRAFT_01825 +0.5 2.4 Outer membrane protein (porin) compare
H281DRAFT_01624 +0.5 1.7 Protein of unknown function (DUF3005) compare
H281DRAFT_00695 +0.5 2.1 choline-sulfatase compare
H281DRAFT_04298 +0.5 1.2 Putative signal transducing protein compare
H281DRAFT_02880 +0.5 2.0 chemotaxis protein methyltransferase CheR compare
H281DRAFT_03989 +0.5 1.5 proteic killer suppression protein compare
H281DRAFT_04626 +0.5 1.9 acetyl-CoA acyltransferase compare
H281DRAFT_04745 +0.5 2.5 hypothetical protein compare
H281DRAFT_05633 +0.5 1.7 hypothetical protein compare
H281DRAFT_02784 +0.4 0.9 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_03103 +0.4 2.4 hypothetical protein compare
H281DRAFT_05363 +0.4 3.5 type VI secretion system protein ImpB compare
H281DRAFT_00406 +0.4 1.2 Signal transduction histidine kinase compare
H281DRAFT_02503 +0.4 2.1 Peroxiredoxin compare
H281DRAFT_05157 +0.4 1.0 allantoin racemase compare
H281DRAFT_01354 +0.4 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02798 +0.4 1.4 hypothetical protein compare
H281DRAFT_06478 +0.4 1.4 succinylornithine aminotransferase apoenzyme compare
H281DRAFT_04744 +0.4 1.1 enoyl-CoA hydratase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source 3-Hydroxypropionate in Paraburkholderia bryophila 376MFSha3.1

For carbon source 3-Hydroxypropionate across organisms