Experiment set6IT036 for Caulobacter crescentus NA1000

Compare to:

PYE 0.5x 25C survival rep3 12 days

Group: survival
Media: PYE (0.5x)
Culturing: Caulo_ML2, tube, Aerobic, at 25 (C), shaken=200 rpm
By: Sneha on 8-Aug-18
Media components: 1 g/L Bacto Peptone, 0.5 g/L Yeast Extract, 0.4 mM Magnesium sulfate, 0.25 mM Calcium chloride (final concentrations)

Specific Phenotypes

For 10 genes in this experiment

SEED Subsystems

Subsystem #Specific
D-ribose utilization 1
Glycine and Serine Utilization 1
LOS core oligosaccharide biosynthesis 1
Peptidoglycan Biosynthesis 1
Phosphate metabolism 1
Potassium homeostasis 1
Proline, 4-hydroxyproline uptake and utilization 1
Pyridoxin (Vitamin B6) Biosynthesis 1
Serine Biosynthesis 1
Type IV pilus 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-serine biosynthesis I 3 3 1
L-cysteine biosynthesis IX (Trichomonas vaginalis) 3 2 1
superpathway of L-serine and glycine biosynthesis I 4 4 1
glyphosate degradation III 7 1 1
(aminomethyl)phosphonate degradation 8 1 1
peptidoglycan biosynthesis II (staphylococci) 17 12 2
peptidoglycan biosynthesis IV (Enterococcus faecium) 17 12 2
peptidoglycan biosynthesis V (β-lactam resistance) 17 11 2
superpathway of sulfate assimilation and cysteine biosynthesis 9 9 1
peptidoglycan biosynthesis I (meso-diaminopimelate containing) 12 11 1
peptidoglycan maturation (meso-diaminopimelate containing) 12 3 1
peptidoglycan biosynthesis III (mycobacteria) 15 11 1